Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09115 and LRK53_RS09120 are separated by 46 nucleotides LRK53_RS09120 and LRK53_RS09125 are separated by 142 nucleotides LRK53_RS09125 and LRK53_RS09130 are separated by 96 nucleotides
LRK53_RS09115: LRK53_RS09115 - DNA gyrase subunit A, at 2,037,984 to 2,040,587
_RS09115
LRK53_RS09120: LRK53_RS09120 - peroxiredoxin, at 2,040,634 to 2,041,116
_RS09120
LRK53_RS09125: LRK53_RS09125 - Hsp20/alpha crystallin family protein, at 2,041,259 to 2,041,717
_RS09125
LRK53_RS09130: LRK53_RS09130 - DnaJ domain-containing protein, at 2,041,814 to 2,042,707
_RS09130
Position (kb)
2040
2041
2042 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2040.585 kb on + strand at 2040.585 kb on + strand at 2040.586 kb on - strand at 2040.586 kb on - strand at 2040.586 kb on - strand at 2040.586 kb on - strand at 2040.645 kb on + strand at 2040.715 kb on + strand, within LRK53_RS09120 at 2040.715 kb on + strand, within LRK53_RS09120 at 2040.716 kb on - strand, within LRK53_RS09120 at 2040.716 kb on - strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.731 kb on + strand, within LRK53_RS09120 at 2040.732 kb on - strand, within LRK53_RS09120 at 2040.732 kb on - strand, within LRK53_RS09120 at 2040.732 kb on - strand, within LRK53_RS09120 at 2040.732 kb on - strand, within LRK53_RS09120 at 2040.732 kb on - strand, within LRK53_RS09120 at 2040.732 kb on - strand, within LRK53_RS09120 at 2040.732 kb on - strand, within LRK53_RS09120 at 2040.732 kb on - strand, within LRK53_RS09120 at 2040.881 kb on + strand, within LRK53_RS09120 at 2040.881 kb on + strand, within LRK53_RS09120 at 2040.881 kb on + strand, within LRK53_RS09120 at 2040.881 kb on + strand, within LRK53_RS09120 at 2040.881 kb on + strand, within LRK53_RS09120 at 2040.882 kb on - strand, within LRK53_RS09120 at 2040.882 kb on - strand, within LRK53_RS09120 at 2040.882 kb on - strand, within LRK53_RS09120 at 2040.882 kb on - strand, within LRK53_RS09120 at 2040.939 kb on - strand, within LRK53_RS09120 at 2041.152 kb on + strand at 2041.153 kb on - strand at 2041.252 kb on + strand at 2041.252 kb on + strand at 2041.252 kb on + strand at 2041.252 kb on + strand at 2041.252 kb on + strand at 2041.252 kb on + strand at 2041.252 kb on + strand at 2041.252 kb on + strand at 2041.252 kb on + strand at 2041.253 kb on - strand at 2041.253 kb on - strand at 2041.253 kb on - strand at 2041.253 kb on - strand at 2041.253 kb on - strand at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.436 kb on + strand, within LRK53_RS09125 at 2041.437 kb on - strand, within LRK53_RS09125 at 2041.437 kb on - strand, within LRK53_RS09125 at 2041.437 kb on - strand, within LRK53_RS09125 at 2041.437 kb on - strand, within LRK53_RS09125 at 2041.437 kb on - strand, within LRK53_RS09125 at 2041.437 kb on - strand, within LRK53_RS09125 at 2041.580 kb on + strand, within LRK53_RS09125 at 2041.580 kb on + strand, within LRK53_RS09125 at 2041.732 kb on + strand at 2041.732 kb on + strand at 2041.829 kb on + strand at 2042.007 kb on - strand, within LRK53_RS09130
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 2,040,585 + -2.4 2,040,585 + -1.9 2,040,586 - +0.5 2,040,586 - -2.2 2,040,586 - -0.8 2,040,586 - -0.2 2,040,645 + +1.0 2,040,715 + LRK53_RS09120 0.17 -0.7 2,040,715 + LRK53_RS09120 0.17 -0.0 2,040,716 - LRK53_RS09120 0.17 -0.6 2,040,716 - LRK53_RS09120 0.17 -0.2 2,040,731 + LRK53_RS09120 0.20 -0.2 2,040,731 + LRK53_RS09120 0.20 -0.8 2,040,731 + LRK53_RS09120 0.20 +1.0 2,040,731 + LRK53_RS09120 0.20 -2.5 2,040,731 + LRK53_RS09120 0.20 -1.1 2,040,731 + LRK53_RS09120 0.20 -0.0 2,040,731 + LRK53_RS09120 0.20 +1.6 2,040,731 + LRK53_RS09120 0.20 -1.2 2,040,731 + LRK53_RS09120 0.20 -1.7 2,040,731 + LRK53_RS09120 0.20 -1.9 2,040,731 + LRK53_RS09120 0.20 -0.0 2,040,731 + LRK53_RS09120 0.20 -0.5 2,040,731 + LRK53_RS09120 0.20 -0.7 2,040,731 + LRK53_RS09120 0.20 -2.9 2,040,731 + LRK53_RS09120 0.20 -2.1 2,040,732 - LRK53_RS09120 0.20 -0.4 2,040,732 - LRK53_RS09120 0.20 -1.0 2,040,732 - LRK53_RS09120 0.20 -0.7 2,040,732 - LRK53_RS09120 0.20 -0.1 2,040,732 - LRK53_RS09120 0.20 -1.8 2,040,732 - LRK53_RS09120 0.20 -0.0 2,040,732 - LRK53_RS09120 0.20 -0.7 2,040,732 - LRK53_RS09120 0.20 -1.1 2,040,881 + LRK53_RS09120 0.51 -2.0 2,040,881 + LRK53_RS09120 0.51 -1.7 2,040,881 + LRK53_RS09120 0.51 -1.6 2,040,881 + LRK53_RS09120 0.51 -1.3 2,040,881 + LRK53_RS09120 0.51 -0.9 2,040,882 - LRK53_RS09120 0.51 +0.2 2,040,882 - LRK53_RS09120 0.51 +0.2 2,040,882 - LRK53_RS09120 0.51 -0.2 2,040,882 - LRK53_RS09120 0.51 -0.1 2,040,939 - LRK53_RS09120 0.63 -1.6 2,041,152 + +0.2 2,041,153 - -0.6 2,041,252 + -0.8 2,041,252 + -2.4 2,041,252 + +0.3 2,041,252 + -0.3 2,041,252 + +0.2 2,041,252 + +0.2 2,041,252 + +0.3 2,041,252 + -1.1 2,041,252 + -0.8 2,041,253 - -0.0 2,041,253 - -0.7 2,041,253 - +0.4 2,041,253 - -0.8 2,041,253 - -0.4 2,041,436 + LRK53_RS09125 0.39 -1.6 2,041,436 + LRK53_RS09125 0.39 +0.4 2,041,436 + LRK53_RS09125 0.39 -0.9 2,041,436 + LRK53_RS09125 0.39 -1.6 2,041,436 + LRK53_RS09125 0.39 -0.1 2,041,436 + LRK53_RS09125 0.39 -0.2 2,041,436 + LRK53_RS09125 0.39 +1.2 2,041,436 + LRK53_RS09125 0.39 -2.8 2,041,436 + LRK53_RS09125 0.39 -0.6 2,041,436 + LRK53_RS09125 0.39 +0.2 2,041,436 + LRK53_RS09125 0.39 -1.4 2,041,436 + LRK53_RS09125 0.39 +0.8 2,041,436 + LRK53_RS09125 0.39 +0.2 2,041,437 - LRK53_RS09125 0.39 -2.9 2,041,437 - LRK53_RS09125 0.39 +0.2 2,041,437 - LRK53_RS09125 0.39 -1.0 2,041,437 - LRK53_RS09125 0.39 +0.4 2,041,437 - LRK53_RS09125 0.39 -1.2 2,041,437 - LRK53_RS09125 0.39 -0.4 2,041,580 + LRK53_RS09125 0.70 -0.7 2,041,580 + LRK53_RS09125 0.70 +0.2 2,041,732 + -1.5 2,041,732 + -0.6 2,041,829 + -0.9 2,042,007 - LRK53_RS09130 0.22 +3.0
Or see this region's nucleotide sequence