Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09105 and LRK53_RS09110 overlap by 4 nucleotides LRK53_RS09110 and LRK53_RS09115 are separated by 138 nucleotides
LRK53_RS09105: LRK53_RS09105 - S-methyl-5-thioribose-1-phosphate isomerase, at 2,036,419 to 2,037,435
_RS09105
LRK53_RS09110: LRK53_RS09110 - GtrA family protein, at 2,037,432 to 2,037,845
_RS09110
LRK53_RS09115: LRK53_RS09115 - DNA gyrase subunit A, at 2,037,984 to 2,040,587
_RS09115
Position (kb)
2037
2038 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2036.871 kb on + strand, within LRK53_RS09105 at 2036.956 kb on + strand, within LRK53_RS09105 at 2036.956 kb on + strand, within LRK53_RS09105 at 2036.956 kb on + strand, within LRK53_RS09105 at 2036.957 kb on - strand, within LRK53_RS09105 at 2036.957 kb on - strand, within LRK53_RS09105 at 2036.957 kb on - strand, within LRK53_RS09105 at 2036.957 kb on - strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.175 kb on + strand, within LRK53_RS09105 at 2037.175 kb on + strand, within LRK53_RS09105 at 2037.176 kb on - strand, within LRK53_RS09105 at 2037.176 kb on - strand, within LRK53_RS09105 at 2037.176 kb on - strand, within LRK53_RS09105 at 2037.176 kb on - strand, within LRK53_RS09105 at 2037.176 kb on - strand, within LRK53_RS09105 at 2037.176 kb on - strand, within LRK53_RS09105 at 2037.176 kb on - strand, within LRK53_RS09105 at 2037.285 kb on + strand, within LRK53_RS09105 at 2037.543 kb on + strand, within LRK53_RS09110 at 2037.543 kb on + strand, within LRK53_RS09110 at 2037.543 kb on + strand, within LRK53_RS09110 at 2037.606 kb on + strand, within LRK53_RS09110 at 2037.607 kb on - strand, within LRK53_RS09110 at 2037.696 kb on + strand, within LRK53_RS09110 at 2037.697 kb on - strand, within LRK53_RS09110 at 2037.705 kb on + strand, within LRK53_RS09110 at 2037.705 kb on + strand, within LRK53_RS09110 at 2037.706 kb on - strand, within LRK53_RS09110 at 2037.706 kb on - strand, within LRK53_RS09110 at 2037.706 kb on - strand, within LRK53_RS09110 at 2037.706 kb on - strand, within LRK53_RS09110 at 2037.715 kb on + strand, within LRK53_RS09110 at 2037.715 kb on + strand, within LRK53_RS09110 at 2037.715 kb on + strand, within LRK53_RS09110 at 2037.715 kb on + strand, within LRK53_RS09110 at 2037.716 kb on - strand, within LRK53_RS09110 at 2037.716 kb on - strand, within LRK53_RS09110 at 2037.716 kb on - strand, within LRK53_RS09110 at 2037.716 kb on - strand, within LRK53_RS09110 at 2037.716 kb on - strand, within LRK53_RS09110 at 2037.858 kb on + strand at 2037.859 kb on - strand at 2037.874 kb on + strand at 2037.874 kb on + strand at 2037.875 kb on - strand at 2037.895 kb on + strand at 2037.904 kb on + strand at 2037.904 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 2,036,871 + LRK53_RS09105 0.44 -1.2 2,036,956 + LRK53_RS09105 0.53 +0.3 2,036,956 + LRK53_RS09105 0.53 -1.8 2,036,956 + LRK53_RS09105 0.53 -0.2 2,036,957 - LRK53_RS09105 0.53 -0.7 2,036,957 - LRK53_RS09105 0.53 +0.7 2,036,957 - LRK53_RS09105 0.53 -0.9 2,036,957 - LRK53_RS09105 0.53 -0.8 2,037,151 + LRK53_RS09105 0.72 -2.7 2,037,151 + LRK53_RS09105 0.72 -1.8 2,037,151 + LRK53_RS09105 0.72 +0.8 2,037,151 + LRK53_RS09105 0.72 -0.5 2,037,151 + LRK53_RS09105 0.72 -2.0 2,037,151 + LRK53_RS09105 0.72 -1.5 2,037,151 + LRK53_RS09105 0.72 -1.8 2,037,151 + LRK53_RS09105 0.72 -0.4 2,037,151 + LRK53_RS09105 0.72 -1.8 2,037,151 + LRK53_RS09105 0.72 -1.2 2,037,151 + LRK53_RS09105 0.72 -2.7 2,037,151 + LRK53_RS09105 0.72 -1.3 2,037,151 + LRK53_RS09105 0.72 -1.2 2,037,151 + LRK53_RS09105 0.72 -1.1 2,037,151 + LRK53_RS09105 0.72 -1.6 2,037,152 - LRK53_RS09105 0.72 -1.1 2,037,152 - LRK53_RS09105 0.72 +0.0 2,037,152 - LRK53_RS09105 0.72 +0.6 2,037,152 - LRK53_RS09105 0.72 -0.6 2,037,152 - LRK53_RS09105 0.72 -1.1 2,037,152 - LRK53_RS09105 0.72 -1.2 2,037,152 - LRK53_RS09105 0.72 -1.1 2,037,152 - LRK53_RS09105 0.72 -0.5 2,037,152 - LRK53_RS09105 0.72 +1.4 2,037,152 - LRK53_RS09105 0.72 -3.3 2,037,152 - LRK53_RS09105 0.72 -1.3 2,037,152 - LRK53_RS09105 0.72 -0.6 2,037,152 - LRK53_RS09105 0.72 +0.1 2,037,152 - LRK53_RS09105 0.72 -0.8 2,037,152 - LRK53_RS09105 0.72 +0.4 2,037,175 + LRK53_RS09105 0.74 -1.5 2,037,175 + LRK53_RS09105 0.74 -1.2 2,037,176 - LRK53_RS09105 0.74 -1.5 2,037,176 - LRK53_RS09105 0.74 +0.1 2,037,176 - LRK53_RS09105 0.74 -0.8 2,037,176 - LRK53_RS09105 0.74 -0.8 2,037,176 - LRK53_RS09105 0.74 -1.2 2,037,176 - LRK53_RS09105 0.74 -2.3 2,037,176 - LRK53_RS09105 0.74 -1.1 2,037,285 + LRK53_RS09105 0.85 -0.6 2,037,543 + LRK53_RS09110 0.27 +0.5 2,037,543 + LRK53_RS09110 0.27 -0.1 2,037,543 + LRK53_RS09110 0.27 +0.2 2,037,606 + LRK53_RS09110 0.42 +1.4 2,037,607 - LRK53_RS09110 0.42 -1.6 2,037,696 + LRK53_RS09110 0.64 -1.2 2,037,697 - LRK53_RS09110 0.64 -1.3 2,037,705 + LRK53_RS09110 0.66 -1.7 2,037,705 + LRK53_RS09110 0.66 -1.6 2,037,706 - LRK53_RS09110 0.66 -0.3 2,037,706 - LRK53_RS09110 0.66 -0.5 2,037,706 - LRK53_RS09110 0.66 +0.4 2,037,706 - LRK53_RS09110 0.66 -0.4 2,037,715 + LRK53_RS09110 0.68 -0.2 2,037,715 + LRK53_RS09110 0.68 -1.1 2,037,715 + LRK53_RS09110 0.68 +0.1 2,037,715 + LRK53_RS09110 0.68 -2.1 2,037,716 - LRK53_RS09110 0.69 -1.5 2,037,716 - LRK53_RS09110 0.69 -0.6 2,037,716 - LRK53_RS09110 0.69 -1.0 2,037,716 - LRK53_RS09110 0.69 -1.1 2,037,716 - LRK53_RS09110 0.69 -1.5 2,037,858 + -2.2 2,037,859 - +0.0 2,037,874 + +0.0 2,037,874 + -2.8 2,037,875 - -1.6 2,037,895 + -0.4 2,037,904 + -1.6 2,037,904 + +0.5
Or see this region's nucleotide sequence