Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS05040 and LRK53_RS05045 are separated by 71 nucleotides LRK53_RS05045 and LRK53_RS05050 are separated by 88 nucleotides LRK53_RS05050 and LRK53_RS05055 are separated by 126 nucleotides
LRK53_RS05040: LRK53_RS05040 - outer membrane protein assembly factor BamD, at 1,189,157 to 1,190,023
_RS05040
LRK53_RS05045: LRK53_RS05045 - 23S rRNA pseudouridine(1911/1915/1917) synthase RluD, at 1,190,095 to 1,191,069
_RS05045
LRK53_RS05050: LRK53_RS05050 - peptidoglycan editing factor PgeF, at 1,191,158 to 1,191,907
_RS05050
LRK53_RS05055: LRK53_RS05055 - ATP-dependent chaperone ClpB, at 1,192,034 to 1,194,631
_RS05055
Position (kb)
1190
1191
1192 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1190.024 kb on - strand at 1190.123 kb on + strand at 1190.123 kb on + strand at 1190.551 kb on + strand, within LRK53_RS05045 at 1190.552 kb on - strand, within LRK53_RS05045 at 1190.552 kb on - strand, within LRK53_RS05045 at 1191.166 kb on + strand at 1191.166 kb on + strand at 1191.167 kb on - strand at 1191.167 kb on - strand at 1191.839 kb on + strand at 1191.839 kb on + strand at 1191.839 kb on + strand at 1191.839 kb on + strand at 1191.840 kb on - strand at 1191.840 kb on - strand at 1191.845 kb on + strand at 1191.975 kb on + strand at 1191.975 kb on + strand at 1191.975 kb on + strand at 1191.976 kb on - strand at 1191.976 kb on - strand at 1191.976 kb on - strand at 1191.976 kb on - strand at 1191.976 kb on - strand at 1191.976 kb on - strand at 1191.976 kb on - strand at 1191.976 kb on - strand at 1191.976 kb on - strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.029 kb on + strand at 1192.030 kb on - strand at 1192.030 kb on - strand at 1192.030 kb on - strand at 1192.030 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 1,190,024 - -1.5 1,190,123 + -1.7 1,190,123 + -1.0 1,190,551 + LRK53_RS05045 0.47 -0.1 1,190,552 - LRK53_RS05045 0.47 -0.5 1,190,552 - LRK53_RS05045 0.47 -0.4 1,191,166 + -0.3 1,191,166 + -0.9 1,191,167 - +0.6 1,191,167 - -0.1 1,191,839 + -1.7 1,191,839 + -1.1 1,191,839 + -1.4 1,191,839 + +1.2 1,191,840 - -1.0 1,191,840 - -0.5 1,191,845 + +0.3 1,191,975 + -2.0 1,191,975 + +0.1 1,191,975 + -0.3 1,191,976 - +0.5 1,191,976 - -0.1 1,191,976 - -2.3 1,191,976 - -2.2 1,191,976 - +0.3 1,191,976 - +0.5 1,191,976 - +0.1 1,191,976 - +1.3 1,191,976 - -0.2 1,192,029 + -1.0 1,192,029 + +2.5 1,192,029 + -2.2 1,192,029 + -1.7 1,192,029 + -2.3 1,192,029 + -3.0 1,192,029 + +0.2 1,192,029 + -0.7 1,192,029 + -2.3 1,192,029 + -0.6 1,192,029 + -0.8 1,192,029 + +0.8 1,192,029 + -1.5 1,192,029 + -1.8 1,192,029 + -2.3 1,192,029 + -1.0 1,192,030 - -0.8 1,192,030 - -1.6 1,192,030 - -1.3 1,192,030 - -2.1
Or see this region's nucleotide sequence