Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS04270 and LRK53_RS04275 overlap by 4 nucleotides LRK53_RS04275 and LRK53_RS04280 are separated by 133 nucleotides LRK53_RS04280 and LRK53_RS04285 overlap by 1 nucleotides
LRK53_RS04270: LRK53_RS04270 - c-type cytochrome, at 994,647 to 994,955
_RS04270
LRK53_RS04275: LRK53_RS04275 - co-chaperone DjlA, at 994,952 to 995,758
_RS04275
LRK53_RS04280: LRK53_RS04280 - HAD hydrolase-like protein, at 995,892 to 996,530
_RS04280
LRK53_RS04285: LRK53_RS04285 - phosphoglycerate kinase, at 996,530 to 997,714
_RS04285
Position (kb) 995
996
997 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 994.923 kb on + strand, within LRK53_RS04270 at 994.923 kb on + strand, within LRK53_RS04270 at 994.923 kb on + strand, within LRK53_RS04270 at 994.923 kb on + strand, within LRK53_RS04270 at 994.924 kb on - strand, within LRK53_RS04270 at 994.924 kb on - strand, within LRK53_RS04270 at 994.924 kb on - strand, within LRK53_RS04270 at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 995.061 kb on - strand, within LRK53_RS04275 at 995.425 kb on + strand, within LRK53_RS04275 at 995.468 kb on + strand, within LRK53_RS04275 at 995.510 kb on + strand, within LRK53_RS04275 at 995.510 kb on + strand, within LRK53_RS04275 at 995.511 kb on - strand, within LRK53_RS04275 at 995.529 kb on - strand, within LRK53_RS04275 at 995.567 kb on + strand, within LRK53_RS04275 at 995.568 kb on - strand, within LRK53_RS04275 at 995.723 kb on + strand at 995.723 kb on + strand at 995.724 kb on - strand at 995.757 kb on - strand at 995.757 kb on - strand at 995.757 kb on - strand at 996.145 kb on + strand, within LRK53_RS04280 at 996.145 kb on + strand, within LRK53_RS04280 at 996.145 kb on + strand, within LRK53_RS04280 at 996.281 kb on - strand, within LRK53_RS04280 at 996.325 kb on + strand, within LRK53_RS04280 at 996.325 kb on + strand, within LRK53_RS04280 at 996.325 kb on + strand, within LRK53_RS04280 at 996.325 kb on + strand, within LRK53_RS04280 at 996.325 kb on + strand, within LRK53_RS04280 at 996.325 kb on + strand, within LRK53_RS04280 at 996.325 kb on + strand, within LRK53_RS04280 at 996.325 kb on + strand, within LRK53_RS04280 at 996.326 kb on - strand, within LRK53_RS04280 at 996.326 kb on - strand, within LRK53_RS04280 at 996.326 kb on - strand, within LRK53_RS04280 at 996.326 kb on - strand, within LRK53_RS04280 at 996.326 kb on - strand, within LRK53_RS04280 at 996.326 kb on - strand, within LRK53_RS04280 at 996.326 kb on - strand, within LRK53_RS04280 at 996.326 kb on - strand, within LRK53_RS04280 at 996.326 kb on - strand, within LRK53_RS04280 at 996.328 kb on + strand, within LRK53_RS04280 at 996.328 kb on + strand, within LRK53_RS04280 at 996.328 kb on + strand, within LRK53_RS04280 at 996.328 kb on + strand, within LRK53_RS04280 at 996.328 kb on + strand, within LRK53_RS04280 at 996.329 kb on - strand, within LRK53_RS04280 at 996.329 kb on - strand, within LRK53_RS04280 at 996.329 kb on - strand, within LRK53_RS04280 at 996.329 kb on - strand, within LRK53_RS04280 at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.531 kb on + strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.532 kb on - strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.621 kb on + strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.645 kb on + strand at 996.645 kb on + strand at 996.645 kb on + strand at 996.645 kb on + strand at 996.645 kb on + strand at 996.645 kb on + strand at 996.645 kb on + strand at 996.646 kb on - strand at 996.646 kb on - strand at 996.646 kb on - strand at 996.646 kb on - strand at 996.646 kb on - strand at 996.813 kb on + strand, within LRK53_RS04285 at 996.813 kb on + strand, within LRK53_RS04285 at 996.814 kb on - strand, within LRK53_RS04285 at 997.008 kb on + strand, within LRK53_RS04285 at 997.008 kb on + strand, within LRK53_RS04285 at 997.008 kb on + strand, within LRK53_RS04285 at 997.008 kb on + strand, within LRK53_RS04285 at 997.009 kb on - strand, within LRK53_RS04285 at 997.009 kb on - strand, within LRK53_RS04285 at 997.009 kb on - strand, within LRK53_RS04285 at 997.009 kb on - strand, within LRK53_RS04285 at 997.009 kb on - strand, within LRK53_RS04285 at 997.029 kb on + strand, within LRK53_RS04285 at 997.030 kb on - strand, within LRK53_RS04285 at 997.030 kb on - strand, within LRK53_RS04285 at 997.239 kb on + strand, within LRK53_RS04285 at 997.239 kb on + strand, within LRK53_RS04285 at 997.239 kb on + strand, within LRK53_RS04285 at 997.239 kb on + strand, within LRK53_RS04285 at 997.239 kb on + strand, within LRK53_RS04285 at 997.239 kb on + strand, within LRK53_RS04285 at 997.239 kb on + strand, within LRK53_RS04285 at 997.239 kb on + strand, within LRK53_RS04285 at 997.239 kb on + strand, within LRK53_RS04285 at 997.240 kb on - strand, within LRK53_RS04285 at 997.240 kb on - strand, within LRK53_RS04285 at 997.240 kb on - strand, within LRK53_RS04285 at 997.240 kb on - strand, within LRK53_RS04285 at 997.240 kb on - strand, within LRK53_RS04285 at 997.240 kb on - strand, within LRK53_RS04285 at 997.240 kb on - strand, within LRK53_RS04285 at 997.240 kb on - strand, within LRK53_RS04285 at 997.240 kb on - strand, within LRK53_RS04285 at 997.240 kb on - strand, within LRK53_RS04285 at 997.240 kb on - strand, within LRK53_RS04285 at 997.240 kb on - strand, within LRK53_RS04285 at 997.240 kb on - strand, within LRK53_RS04285 at 997.240 kb on - strand, within LRK53_RS04285 at 997.323 kb on + strand, within LRK53_RS04285 at 997.323 kb on + strand, within LRK53_RS04285 at 997.323 kb on + strand, within LRK53_RS04285 at 997.323 kb on + strand, within LRK53_RS04285 at 997.323 kb on + strand, within LRK53_RS04285 at 997.323 kb on + strand, within LRK53_RS04285 at 997.324 kb on - strand, within LRK53_RS04285 at 997.324 kb on - strand, within LRK53_RS04285 at 997.324 kb on - strand, within LRK53_RS04285 at 997.324 kb on - strand, within LRK53_RS04285 at 997.324 kb on - strand, within LRK53_RS04285 at 997.428 kb on + strand, within LRK53_RS04285 at 997.429 kb on - strand, within LRK53_RS04285 at 997.429 kb on - strand, within LRK53_RS04285
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 994,923 + LRK53_RS04270 0.89 -0.4 994,923 + LRK53_RS04270 0.89 -1.8 994,923 + LRK53_RS04270 0.89 -0.1 994,923 + LRK53_RS04270 0.89 -1.3 994,924 - LRK53_RS04270 0.90 +0.9 994,924 - LRK53_RS04270 0.90 +0.3 994,924 - LRK53_RS04270 0.90 -1.5 994,958 + -2.1 994,958 + -0.5 994,958 + +0.6 994,958 + -1.3 994,958 + +0.5 994,958 + +0.3 994,958 + -0.5 994,958 + -3.0 994,958 + +0.4 994,958 + -1.3 994,958 + +0.1 994,958 + -0.2 994,959 - -0.4 994,959 - -1.1 994,959 - -0.5 994,959 - -1.8 994,959 - -0.5 994,959 - -0.6 994,959 - -1.2 994,959 - -0.5 994,959 - -1.3 994,959 - -0.9 994,959 - -1.8 994,959 - -0.1 994,964 + -1.0 994,964 + -1.9 994,964 + -2.9 994,964 + -1.6 994,964 + -0.4 994,964 + -2.6 994,964 + -0.8 994,964 + -0.7 994,964 + -0.3 994,964 + -1.1 994,964 + -1.7 994,964 + -1.4 994,964 + +0.5 994,964 + +0.5 994,964 + -2.9 994,964 + -0.8 994,964 + -0.8 994,965 - -0.9 994,965 - -0.5 994,965 - -0.6 994,965 - -0.8 994,965 - -1.4 994,965 - -0.9 994,965 - -1.1 994,965 - -0.7 994,965 - +1.6 994,965 - -1.3 994,965 - +0.4 994,965 - -1.8 994,965 - -1.2 994,965 - -0.8 994,965 - -0.6 995,061 - LRK53_RS04275 0.14 -1.1 995,425 + LRK53_RS04275 0.59 -0.8 995,468 + LRK53_RS04275 0.64 -0.7 995,510 + LRK53_RS04275 0.69 -0.8 995,510 + LRK53_RS04275 0.69 -0.1 995,511 - LRK53_RS04275 0.69 +1.9 995,529 - LRK53_RS04275 0.71 -1.9 995,567 + LRK53_RS04275 0.76 +1.1 995,568 - LRK53_RS04275 0.76 -2.4 995,723 + -0.7 995,723 + -0.1 995,724 - -2.2 995,757 - -0.8 995,757 - +0.1 995,757 - +0.6 996,145 + LRK53_RS04280 0.40 +2.1 996,145 + LRK53_RS04280 0.40 -0.0 996,145 + LRK53_RS04280 0.40 -0.2 996,281 - LRK53_RS04280 0.61 -0.1 996,325 + LRK53_RS04280 0.68 -2.3 996,325 + LRK53_RS04280 0.68 -1.0 996,325 + LRK53_RS04280 0.68 -0.8 996,325 + LRK53_RS04280 0.68 -1.5 996,325 + LRK53_RS04280 0.68 -0.7 996,325 + LRK53_RS04280 0.68 -0.5 996,325 + LRK53_RS04280 0.68 -2.1 996,325 + LRK53_RS04280 0.68 -2.6 996,326 - LRK53_RS04280 0.68 -0.9 996,326 - LRK53_RS04280 0.68 -0.2 996,326 - LRK53_RS04280 0.68 -4.0 996,326 - LRK53_RS04280 0.68 -0.5 996,326 - LRK53_RS04280 0.68 +0.3 996,326 - LRK53_RS04280 0.68 -2.7 996,326 - LRK53_RS04280 0.68 -1.2 996,326 - LRK53_RS04280 0.68 -0.5 996,326 - LRK53_RS04280 0.68 +0.2 996,328 + LRK53_RS04280 0.68 +0.1 996,328 + LRK53_RS04280 0.68 -2.5 996,328 + LRK53_RS04280 0.68 -0.4 996,328 + LRK53_RS04280 0.68 -1.9 996,328 + LRK53_RS04280 0.68 -2.7 996,329 - LRK53_RS04280 0.68 -1.7 996,329 - LRK53_RS04280 0.68 -0.1 996,329 - LRK53_RS04280 0.68 -0.3 996,329 - LRK53_RS04280 0.68 -0.1 996,531 + -0.8 996,531 + -2.5 996,531 + -0.1 996,531 + -1.6 996,531 + -0.8 996,531 + +0.3 996,531 + -1.6 996,531 + -0.4 996,531 + -0.7 996,531 + +2.1 996,531 + -1.7 996,531 + -1.5 996,531 + -1.4 996,531 + -1.2 996,531 + +0.1 996,531 + +0.3 996,531 + -1.5 996,531 + +0.3 996,531 + +0.8 996,531 + -1.0 996,531 + +0.8 996,531 + -1.5 996,531 + -0.6 996,531 + -0.7 996,531 + +0.5 996,531 + -0.8 996,531 + -0.6 996,532 - -1.2 996,532 - -0.2 996,532 - -1.4 996,532 - -1.4 996,532 - -0.2 996,532 - -0.5 996,532 - -2.1 996,532 - -0.8 996,532 - -0.4 996,532 - -0.5 996,532 - +0.6 996,532 - +0.0 996,532 - -1.0 996,532 - -0.5 996,532 - -0.8 996,532 - -0.1 996,532 - -1.4 996,532 - -1.9 996,532 - +0.9 996,532 - -0.9 996,532 - -1.1 996,532 - +0.2 996,532 - -1.4 996,532 - -1.4 996,532 - +1.1 996,532 - -0.6 996,532 - -2.0 996,532 - -0.4 996,532 - +0.0 996,532 - -0.9 996,532 - -3.3 996,532 - -1.5 996,532 - +0.3 996,532 - -0.1 996,532 - -1.8 996,532 - +0.4 996,532 - -1.4 996,621 + -0.7 996,621 + -1.5 996,621 + -0.1 996,621 + -2.8 996,621 + -0.8 996,621 + +0.1 996,621 + -1.6 996,621 + +0.1 996,621 + -1.6 996,621 + -1.1 996,621 + +0.5 996,621 + -1.8 996,621 + -0.5 996,621 + -0.5 996,622 - -1.0 996,622 - -0.8 996,622 - -1.1 996,622 - -0.2 996,622 - -0.7 996,622 - +0.9 996,622 - -0.2 996,622 - -0.9 996,622 - +0.3 996,622 - -0.8 996,622 - -0.1 996,622 - -1.5 996,622 - -0.2 996,622 - -0.5 996,622 - -0.9 996,622 - -0.2 996,645 + -1.1 996,645 + -1.0 996,645 + +0.9 996,645 + -0.4 996,645 + -0.1 996,645 + -0.8 996,645 + -1.4 996,646 - +0.3 996,646 - -0.5 996,646 - -0.1 996,646 - -1.4 996,646 - +0.6 996,813 + LRK53_RS04285 0.24 +0.0 996,813 + LRK53_RS04285 0.24 +0.9 996,814 - LRK53_RS04285 0.24 -0.7 997,008 + LRK53_RS04285 0.40 -0.7 997,008 + LRK53_RS04285 0.40 -0.7 997,008 + LRK53_RS04285 0.40 -0.6 997,008 + LRK53_RS04285 0.40 -0.2 997,009 - LRK53_RS04285 0.40 -1.1 997,009 - LRK53_RS04285 0.40 +1.2 997,009 - LRK53_RS04285 0.40 -0.2 997,009 - LRK53_RS04285 0.40 -0.2 997,009 - LRK53_RS04285 0.40 +0.2 997,029 + LRK53_RS04285 0.42 -0.4 997,030 - LRK53_RS04285 0.42 -0.2 997,030 - LRK53_RS04285 0.42 -0.3 997,239 + LRK53_RS04285 0.60 -0.7 997,239 + LRK53_RS04285 0.60 -0.6 997,239 + LRK53_RS04285 0.60 -2.0 997,239 + LRK53_RS04285 0.60 +0.9 997,239 + LRK53_RS04285 0.60 -1.9 997,239 + LRK53_RS04285 0.60 -1.4 997,239 + LRK53_RS04285 0.60 +0.8 997,239 + LRK53_RS04285 0.60 -1.8 997,239 + LRK53_RS04285 0.60 -0.5 997,240 - LRK53_RS04285 0.60 -1.4 997,240 - LRK53_RS04285 0.60 -0.7 997,240 - LRK53_RS04285 0.60 -0.0 997,240 - LRK53_RS04285 0.60 -1.2 997,240 - LRK53_RS04285 0.60 -0.5 997,240 - LRK53_RS04285 0.60 +0.6 997,240 - LRK53_RS04285 0.60 -2.2 997,240 - LRK53_RS04285 0.60 -1.0 997,240 - LRK53_RS04285 0.60 +0.3 997,240 - LRK53_RS04285 0.60 -0.4 997,240 - LRK53_RS04285 0.60 -1.9 997,240 - LRK53_RS04285 0.60 -2.3 997,240 - LRK53_RS04285 0.60 -1.0 997,240 - LRK53_RS04285 0.60 -1.3 997,323 + LRK53_RS04285 0.67 -2.1 997,323 + LRK53_RS04285 0.67 -0.3 997,323 + LRK53_RS04285 0.67 -0.6 997,323 + LRK53_RS04285 0.67 -0.5 997,323 + LRK53_RS04285 0.67 -1.8 997,323 + LRK53_RS04285 0.67 -1.1 997,324 - LRK53_RS04285 0.67 +2.4 997,324 - LRK53_RS04285 0.67 -3.1 997,324 - LRK53_RS04285 0.67 -0.8 997,324 - LRK53_RS04285 0.67 -0.8 997,324 - LRK53_RS04285 0.67 -0.3 997,428 + LRK53_RS04285 0.76 -1.7 997,429 - LRK53_RS04285 0.76 +1.0 997,429 - LRK53_RS04285 0.76 -1.7
Or see this region's nucleotide sequence