Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS04145 and LRK53_RS04150 are separated by 67 nucleotides LRK53_RS04150 and LRK53_RS04155 are separated by 97 nucleotides LRK53_RS04155 and LRK53_RS04160 are separated by 12 nucleotides LRK53_RS04160 and LRK53_RS04165 are separated by 121 nucleotides
LRK53_RS04145: LRK53_RS04145 - hypothetical protein, at 969,452 to 969,925
_RS04145
LRK53_RS04150: LRK53_RS04150 - DUF2884 family protein, at 969,993 to 970,745
_RS04150
LRK53_RS04155: LRK53_RS04155 - DUF2383 domain-containing protein, at 970,843 to 971,283
_RS04155
LRK53_RS04160: LRK53_RS04160 - DUF924 domain-containing protein, at 971,296 to 971,871
_RS04160
LRK53_RS04165: LRK53_RS04165 - DUF2845 domain-containing protein, at 971,993 to 972,301
_RS04165
Position (kb) 970
971
972 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 970.092 kb on + strand, within LRK53_RS04150 at 970.092 kb on + strand, within LRK53_RS04150 at 970.092 kb on + strand, within LRK53_RS04150 at 970.092 kb on + strand, within LRK53_RS04150 at 970.092 kb on + strand, within LRK53_RS04150 at 970.092 kb on + strand, within LRK53_RS04150 at 970.092 kb on + strand, within LRK53_RS04150 at 970.092 kb on + strand, within LRK53_RS04150 at 970.093 kb on - strand, within LRK53_RS04150 at 970.093 kb on - strand, within LRK53_RS04150 at 970.093 kb on - strand, within LRK53_RS04150 at 970.093 kb on - strand, within LRK53_RS04150 at 970.409 kb on + strand, within LRK53_RS04150 at 970.409 kb on + strand, within LRK53_RS04150 at 970.409 kb on + strand, within LRK53_RS04150 at 970.409 kb on + strand, within LRK53_RS04150 at 970.409 kb on + strand, within LRK53_RS04150 at 970.409 kb on + strand, within LRK53_RS04150 at 970.410 kb on - strand, within LRK53_RS04150 at 970.410 kb on - strand, within LRK53_RS04150 at 970.793 kb on + strand at 970.793 kb on + strand at 970.793 kb on + strand at 970.793 kb on + strand at 970.793 kb on + strand at 970.794 kb on - strand at 970.794 kb on - strand at 970.794 kb on - strand at 970.860 kb on + strand at 970.860 kb on + strand at 970.860 kb on + strand at 970.860 kb on + strand at 970.860 kb on + strand at 970.860 kb on + strand at 970.860 kb on + strand at 970.860 kb on + strand at 970.860 kb on + strand at 970.860 kb on + strand at 970.861 kb on - strand at 970.861 kb on - strand at 970.861 kb on - strand at 970.861 kb on - strand at 970.861 kb on - strand at 970.861 kb on - strand at 970.861 kb on - strand at 970.861 kb on - strand at 970.861 kb on - strand at 970.861 kb on - strand at 970.861 kb on - strand at 970.861 kb on - strand at 970.861 kb on - strand at 970.861 kb on - strand at 971.063 kb on + strand, within LRK53_RS04155 at 971.063 kb on + strand, within LRK53_RS04155 at 971.064 kb on - strand, within LRK53_RS04155 at 971.278 kb on + strand at 971.278 kb on + strand at 971.384 kb on + strand, within LRK53_RS04160 at 971.384 kb on + strand, within LRK53_RS04160 at 971.384 kb on + strand, within LRK53_RS04160 at 971.384 kb on + strand, within LRK53_RS04160 at 971.384 kb on + strand, within LRK53_RS04160 at 971.384 kb on + strand, within LRK53_RS04160 at 971.385 kb on - strand, within LRK53_RS04160 at 971.385 kb on - strand, within LRK53_RS04160 at 971.385 kb on - strand, within LRK53_RS04160 at 971.385 kb on - strand, within LRK53_RS04160 at 971.385 kb on - strand, within LRK53_RS04160 at 971.385 kb on - strand, within LRK53_RS04160 at 971.385 kb on - strand, within LRK53_RS04160 at 971.385 kb on - strand, within LRK53_RS04160 at 971.512 kb on + strand, within LRK53_RS04160 at 971.512 kb on + strand, within LRK53_RS04160 at 971.626 kb on + strand, within LRK53_RS04160 at 971.626 kb on + strand, within LRK53_RS04160 at 971.626 kb on + strand, within LRK53_RS04160 at 971.627 kb on - strand, within LRK53_RS04160 at 971.627 kb on - strand, within LRK53_RS04160 at 971.627 kb on - strand, within LRK53_RS04160 at 971.627 kb on - strand, within LRK53_RS04160 at 971.627 kb on - strand, within LRK53_RS04160 at 971.737 kb on + strand, within LRK53_RS04160 at 971.737 kb on + strand, within LRK53_RS04160 at 971.737 kb on + strand, within LRK53_RS04160 at 971.737 kb on + strand, within LRK53_RS04160 at 971.737 kb on + strand, within LRK53_RS04160 at 971.737 kb on + strand, within LRK53_RS04160 at 971.737 kb on + strand, within LRK53_RS04160 at 971.737 kb on + strand, within LRK53_RS04160 at 971.738 kb on - strand, within LRK53_RS04160 at 971.738 kb on - strand, within LRK53_RS04160 at 971.738 kb on - strand, within LRK53_RS04160 at 971.746 kb on + strand, within LRK53_RS04160 at 971.746 kb on + strand, within LRK53_RS04160 at 971.746 kb on + strand, within LRK53_RS04160 at 971.746 kb on + strand, within LRK53_RS04160 at 971.746 kb on + strand, within LRK53_RS04160 at 971.747 kb on - strand, within LRK53_RS04160 at 971.747 kb on - strand, within LRK53_RS04160 at 971.747 kb on - strand, within LRK53_RS04160 at 971.747 kb on - strand, within LRK53_RS04160 at 971.747 kb on - strand, within LRK53_RS04160 at 971.747 kb on - strand, within LRK53_RS04160 at 971.747 kb on - strand, within LRK53_RS04160 at 971.747 kb on - strand, within LRK53_RS04160 at 971.747 kb on - strand, within LRK53_RS04160 at 971.842 kb on + strand at 971.842 kb on + strand at 971.842 kb on + strand at 971.842 kb on + strand at 971.842 kb on + strand at 971.842 kb on + strand at 971.842 kb on + strand at 971.842 kb on + strand at 971.842 kb on + strand at 971.842 kb on + strand at 971.843 kb on - strand at 971.843 kb on - strand at 971.902 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 970,092 + LRK53_RS04150 0.13 -0.1 970,092 + LRK53_RS04150 0.13 +0.3 970,092 + LRK53_RS04150 0.13 -0.2 970,092 + LRK53_RS04150 0.13 -2.1 970,092 + LRK53_RS04150 0.13 -0.1 970,092 + LRK53_RS04150 0.13 -0.4 970,092 + LRK53_RS04150 0.13 -1.5 970,092 + LRK53_RS04150 0.13 -1.6 970,093 - LRK53_RS04150 0.13 -1.9 970,093 - LRK53_RS04150 0.13 -1.0 970,093 - LRK53_RS04150 0.13 +1.0 970,093 - LRK53_RS04150 0.13 -1.1 970,409 + LRK53_RS04150 0.55 +0.4 970,409 + LRK53_RS04150 0.55 +2.3 970,409 + LRK53_RS04150 0.55 -1.9 970,409 + LRK53_RS04150 0.55 -3.1 970,409 + LRK53_RS04150 0.55 -1.6 970,409 + LRK53_RS04150 0.55 -0.4 970,410 - LRK53_RS04150 0.55 -1.0 970,410 - LRK53_RS04150 0.55 -3.1 970,793 + -1.5 970,793 + -1.3 970,793 + -1.6 970,793 + +0.1 970,793 + -0.4 970,794 - -0.2 970,794 - -1.1 970,794 - -0.7 970,860 + +0.6 970,860 + +1.0 970,860 + -1.5 970,860 + -1.1 970,860 + -2.2 970,860 + +0.1 970,860 + +0.3 970,860 + -0.3 970,860 + -1.5 970,860 + -0.2 970,861 - -0.5 970,861 - -2.1 970,861 - -0.2 970,861 - +0.3 970,861 - -1.8 970,861 - -3.2 970,861 - +0.5 970,861 - -0.8 970,861 - -1.1 970,861 - -1.5 970,861 - -0.6 970,861 - -1.3 970,861 - -1.2 970,861 - -1.4 971,063 + LRK53_RS04155 0.50 -1.0 971,063 + LRK53_RS04155 0.50 -1.0 971,064 - LRK53_RS04155 0.50 -1.9 971,278 + -1.3 971,278 + -0.9 971,384 + LRK53_RS04160 0.15 +0.9 971,384 + LRK53_RS04160 0.15 -2.1 971,384 + LRK53_RS04160 0.15 -1.4 971,384 + LRK53_RS04160 0.15 -0.7 971,384 + LRK53_RS04160 0.15 -0.8 971,384 + LRK53_RS04160 0.15 +0.5 971,385 - LRK53_RS04160 0.15 +0.8 971,385 - LRK53_RS04160 0.15 +0.3 971,385 - LRK53_RS04160 0.15 -1.9 971,385 - LRK53_RS04160 0.15 -1.8 971,385 - LRK53_RS04160 0.15 +0.9 971,385 - LRK53_RS04160 0.15 -2.0 971,385 - LRK53_RS04160 0.15 -1.9 971,385 - LRK53_RS04160 0.15 -0.7 971,512 + LRK53_RS04160 0.38 -1.4 971,512 + LRK53_RS04160 0.38 -0.5 971,626 + LRK53_RS04160 0.57 -1.1 971,626 + LRK53_RS04160 0.57 -0.1 971,626 + LRK53_RS04160 0.57 -1.1 971,627 - LRK53_RS04160 0.57 -0.7 971,627 - LRK53_RS04160 0.57 -1.9 971,627 - LRK53_RS04160 0.57 -1.2 971,627 - LRK53_RS04160 0.57 +0.1 971,627 - LRK53_RS04160 0.57 -0.7 971,737 + LRK53_RS04160 0.77 -2.9 971,737 + LRK53_RS04160 0.77 -0.5 971,737 + LRK53_RS04160 0.77 -1.1 971,737 + LRK53_RS04160 0.77 -1.1 971,737 + LRK53_RS04160 0.77 +0.0 971,737 + LRK53_RS04160 0.77 +0.3 971,737 + LRK53_RS04160 0.77 +1.5 971,737 + LRK53_RS04160 0.77 +0.9 971,738 - LRK53_RS04160 0.77 -0.5 971,738 - LRK53_RS04160 0.77 -0.9 971,738 - LRK53_RS04160 0.77 -0.9 971,746 + LRK53_RS04160 0.78 -0.2 971,746 + LRK53_RS04160 0.78 +0.0 971,746 + LRK53_RS04160 0.78 -1.1 971,746 + LRK53_RS04160 0.78 -3.1 971,746 + LRK53_RS04160 0.78 -1.5 971,747 - LRK53_RS04160 0.78 -0.9 971,747 - LRK53_RS04160 0.78 -1.1 971,747 - LRK53_RS04160 0.78 +1.1 971,747 - LRK53_RS04160 0.78 -0.8 971,747 - LRK53_RS04160 0.78 -0.7 971,747 - LRK53_RS04160 0.78 -0.8 971,747 - LRK53_RS04160 0.78 +0.1 971,747 - LRK53_RS04160 0.78 -2.1 971,747 - LRK53_RS04160 0.78 -1.8 971,842 + -0.7 971,842 + -1.2 971,842 + -0.3 971,842 + -0.1 971,842 + -0.4 971,842 + -0.8 971,842 + -2.9 971,842 + -0.8 971,842 + -2.6 971,842 + +0.3 971,843 - +0.4 971,843 - -0.4 971,902 - -0.4
Or see this region's nucleotide sequence