Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS04020 and LRK53_RS04025 are separated by 3 nucleotides LRK53_RS04025 and LRK53_RS04030 are separated by 20 nucleotides
LRK53_RS04020: LRK53_RS04020 - tetratricopeptide repeat-containing sulfotransferase family protein, at 940,375 to 942,204
_RS04020
LRK53_RS04025: LRK53_RS04025 - sulfotransferase, at 942,208 to 943,764
_RS04025
LRK53_RS04030: LRK53_RS04030 - sulfotransferase, at 943,785 to 945,362
_RS04030
Position (kb) 942
943
944 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 941.426 kb on + strand, within LRK53_RS04020 at 941.426 kb on + strand, within LRK53_RS04020 at 941.427 kb on - strand, within LRK53_RS04020 at 941.427 kb on - strand, within LRK53_RS04020 at 941.620 kb on + strand, within LRK53_RS04020 at 941.620 kb on + strand, within LRK53_RS04020 at 941.620 kb on + strand, within LRK53_RS04020 at 941.621 kb on - strand, within LRK53_RS04020 at 941.621 kb on - strand, within LRK53_RS04020 at 941.621 kb on - strand, within LRK53_RS04020 at 941.621 kb on - strand, within LRK53_RS04020 at 941.621 kb on - strand, within LRK53_RS04020 at 941.621 kb on - strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.782 kb on + strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.783 kb on - strand, within LRK53_RS04020 at 941.851 kb on + strand, within LRK53_RS04020 at 941.851 kb on + strand, within LRK53_RS04020 at 941.852 kb on - strand, within LRK53_RS04020 at 941.852 kb on - strand, within LRK53_RS04020 at 941.852 kb on - strand, within LRK53_RS04020 at 941.920 kb on + strand, within LRK53_RS04020 at 942.052 kb on + strand at 942.052 kb on + strand at 942.052 kb on + strand at 942.052 kb on + strand at 942.052 kb on + strand at 942.052 kb on + strand at 942.053 kb on - strand at 942.053 kb on - strand at 942.053 kb on - strand at 942.053 kb on - strand at 942.053 kb on - strand at 942.166 kb on + strand at 942.166 kb on + strand at 942.166 kb on + strand at 942.166 kb on + strand at 942.166 kb on + strand at 942.167 kb on - strand at 942.252 kb on - strand at 942.425 kb on + strand, within LRK53_RS04025 at 942.426 kb on - strand, within LRK53_RS04025 at 942.426 kb on - strand, within LRK53_RS04025 at 942.640 kb on + strand, within LRK53_RS04025 at 942.640 kb on + strand, within LRK53_RS04025 at 942.640 kb on + strand, within LRK53_RS04025 at 942.640 kb on + strand, within LRK53_RS04025 at 942.640 kb on + strand, within LRK53_RS04025 at 942.640 kb on + strand, within LRK53_RS04025 at 942.640 kb on + strand, within LRK53_RS04025 at 942.640 kb on + strand, within LRK53_RS04025 at 942.640 kb on + strand, within LRK53_RS04025 at 942.640 kb on + strand, within LRK53_RS04025 at 942.640 kb on + strand, within LRK53_RS04025 at 942.640 kb on + strand, within LRK53_RS04025 at 942.641 kb on - strand, within LRK53_RS04025 at 942.641 kb on - strand, within LRK53_RS04025 at 942.641 kb on - strand, within LRK53_RS04025 at 942.641 kb on - strand, within LRK53_RS04025 at 942.641 kb on - strand, within LRK53_RS04025 at 942.641 kb on - strand, within LRK53_RS04025 at 942.641 kb on - strand, within LRK53_RS04025 at 942.641 kb on - strand, within LRK53_RS04025 at 942.641 kb on - strand, within LRK53_RS04025 at 942.641 kb on - strand, within LRK53_RS04025 at 942.641 kb on - strand, within LRK53_RS04025 at 942.641 kb on - strand, within LRK53_RS04025 at 942.641 kb on - strand, within LRK53_RS04025 at 942.674 kb on + strand, within LRK53_RS04025 at 942.674 kb on + strand, within LRK53_RS04025 at 942.674 kb on + strand, within LRK53_RS04025 at 942.674 kb on + strand, within LRK53_RS04025 at 942.674 kb on + strand, within LRK53_RS04025 at 942.674 kb on + strand, within LRK53_RS04025 at 942.674 kb on + strand, within LRK53_RS04025 at 942.674 kb on + strand, within LRK53_RS04025 at 942.674 kb on + strand, within LRK53_RS04025 at 942.675 kb on - strand, within LRK53_RS04025 at 942.675 kb on - strand, within LRK53_RS04025 at 942.675 kb on - strand, within LRK53_RS04025 at 942.675 kb on - strand, within LRK53_RS04025 at 942.675 kb on - strand, within LRK53_RS04025 at 942.675 kb on - strand, within LRK53_RS04025 at 942.675 kb on - strand, within LRK53_RS04025 at 942.675 kb on - strand, within LRK53_RS04025 at 942.675 kb on - strand, within LRK53_RS04025 at 942.716 kb on + strand, within LRK53_RS04025 at 942.716 kb on + strand, within LRK53_RS04025 at 942.717 kb on - strand, within LRK53_RS04025 at 942.717 kb on - strand, within LRK53_RS04025 at 942.787 kb on + strand, within LRK53_RS04025 at 943.699 kb on + strand at 943.699 kb on + strand at 943.699 kb on + strand at 943.699 kb on + strand at 943.699 kb on + strand at 943.699 kb on + strand at 943.699 kb on + strand at 943.700 kb on - strand at 943.700 kb on - strand at 943.700 kb on - strand at 943.700 kb on - strand at 943.700 kb on - strand at 943.700 kb on - strand at 943.700 kb on - strand at 943.700 kb on - strand at 943.700 kb on - strand at 943.700 kb on - strand at 943.843 kb on + strand at 943.844 kb on - strand at 943.844 kb on - strand at 943.844 kb on - strand at 943.844 kb on - strand at 943.844 kb on - strand at 943.919 kb on + strand at 943.920 kb on - strand at 943.920 kb on - strand at 943.920 kb on - strand at 944.017 kb on + strand, within LRK53_RS04030 at 944.017 kb on + strand, within LRK53_RS04030 at 944.018 kb on - strand, within LRK53_RS04030 at 944.018 kb on - strand, within LRK53_RS04030 at 944.018 kb on - strand, within LRK53_RS04030 at 944.018 kb on - strand, within LRK53_RS04030 at 944.018 kb on - strand, within LRK53_RS04030 at 944.018 kb on - strand, within LRK53_RS04030 at 944.119 kb on + strand, within LRK53_RS04030 at 944.119 kb on + strand, within LRK53_RS04030 at 944.119 kb on + strand, within LRK53_RS04030 at 944.119 kb on + strand, within LRK53_RS04030 at 944.119 kb on + strand, within LRK53_RS04030 at 944.119 kb on + strand, within LRK53_RS04030 at 944.119 kb on + strand, within LRK53_RS04030 at 944.119 kb on + strand, within LRK53_RS04030 at 944.120 kb on - strand, within LRK53_RS04030 at 944.120 kb on - strand, within LRK53_RS04030 at 944.120 kb on - strand, within LRK53_RS04030 at 944.120 kb on - strand, within LRK53_RS04030 at 944.120 kb on - strand, within LRK53_RS04030 at 944.120 kb on - strand, within LRK53_RS04030 at 944.120 kb on - strand, within LRK53_RS04030 at 944.120 kb on - strand, within LRK53_RS04030 at 944.147 kb on - strand, within LRK53_RS04030 at 944.230 kb on + strand, within LRK53_RS04030 at 944.230 kb on + strand, within LRK53_RS04030 at 944.230 kb on + strand, within LRK53_RS04030 at 944.230 kb on + strand, within LRK53_RS04030 at 944.230 kb on + strand, within LRK53_RS04030 at 944.230 kb on + strand, within LRK53_RS04030 at 944.230 kb on + strand, within LRK53_RS04030 at 944.230 kb on + strand, within LRK53_RS04030 at 944.230 kb on + strand, within LRK53_RS04030 at 944.231 kb on - strand, within LRK53_RS04030 at 944.231 kb on - strand, within LRK53_RS04030 at 944.302 kb on + strand, within LRK53_RS04030 at 944.302 kb on + strand, within LRK53_RS04030 at 944.303 kb on - strand, within LRK53_RS04030 at 944.303 kb on - strand, within LRK53_RS04030 at 944.660 kb on - strand, within LRK53_RS04030
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 941,426 + LRK53_RS04020 0.57 -0.7 941,426 + LRK53_RS04020 0.57 -0.1 941,427 - LRK53_RS04020 0.57 +0.1 941,427 - LRK53_RS04020 0.57 -2.2 941,620 + LRK53_RS04020 0.68 -0.2 941,620 + LRK53_RS04020 0.68 -0.6 941,620 + LRK53_RS04020 0.68 -1.7 941,621 - LRK53_RS04020 0.68 -2.6 941,621 - LRK53_RS04020 0.68 -0.6 941,621 - LRK53_RS04020 0.68 -2.9 941,621 - LRK53_RS04020 0.68 -0.2 941,621 - LRK53_RS04020 0.68 -0.1 941,621 - LRK53_RS04020 0.68 +1.1 941,782 + LRK53_RS04020 0.77 -1.8 941,782 + LRK53_RS04020 0.77 -0.3 941,782 + LRK53_RS04020 0.77 -0.6 941,782 + LRK53_RS04020 0.77 +0.2 941,782 + LRK53_RS04020 0.77 -0.3 941,782 + LRK53_RS04020 0.77 +0.3 941,782 + LRK53_RS04020 0.77 +1.2 941,782 + LRK53_RS04020 0.77 -0.5 941,782 + LRK53_RS04020 0.77 -1.3 941,782 + LRK53_RS04020 0.77 +0.4 941,782 + LRK53_RS04020 0.77 -0.5 941,782 + LRK53_RS04020 0.77 -0.2 941,782 + LRK53_RS04020 0.77 +1.0 941,782 + LRK53_RS04020 0.77 -1.4 941,782 + LRK53_RS04020 0.77 -0.7 941,782 + LRK53_RS04020 0.77 +0.5 941,782 + LRK53_RS04020 0.77 -1.0 941,782 + LRK53_RS04020 0.77 -1.3 941,782 + LRK53_RS04020 0.77 -2.4 941,782 + LRK53_RS04020 0.77 -0.6 941,782 + LRK53_RS04020 0.77 -2.7 941,782 + LRK53_RS04020 0.77 -0.9 941,782 + LRK53_RS04020 0.77 +0.1 941,782 + LRK53_RS04020 0.77 -2.2 941,783 - LRK53_RS04020 0.77 -2.1 941,783 - LRK53_RS04020 0.77 -0.4 941,783 - LRK53_RS04020 0.77 -0.8 941,783 - LRK53_RS04020 0.77 -2.0 941,783 - LRK53_RS04020 0.77 -0.6 941,783 - LRK53_RS04020 0.77 -0.6 941,783 - LRK53_RS04020 0.77 -2.3 941,783 - LRK53_RS04020 0.77 -0.7 941,783 - LRK53_RS04020 0.77 -1.3 941,783 - LRK53_RS04020 0.77 +0.3 941,783 - LRK53_RS04020 0.77 -0.8 941,783 - LRK53_RS04020 0.77 -2.3 941,783 - LRK53_RS04020 0.77 -0.5 941,783 - LRK53_RS04020 0.77 -2.4 941,783 - LRK53_RS04020 0.77 -1.6 941,783 - LRK53_RS04020 0.77 +0.1 941,783 - LRK53_RS04020 0.77 -0.1 941,783 - LRK53_RS04020 0.77 -1.2 941,783 - LRK53_RS04020 0.77 -0.9 941,783 - LRK53_RS04020 0.77 -1.4 941,783 - LRK53_RS04020 0.77 -1.4 941,783 - LRK53_RS04020 0.77 -2.1 941,783 - LRK53_RS04020 0.77 -0.8 941,783 - LRK53_RS04020 0.77 +0.1 941,783 - LRK53_RS04020 0.77 -1.0 941,851 + LRK53_RS04020 0.81 -0.4 941,851 + LRK53_RS04020 0.81 +0.8 941,852 - LRK53_RS04020 0.81 -0.5 941,852 - LRK53_RS04020 0.81 -1.4 941,852 - LRK53_RS04020 0.81 +0.3 941,920 + LRK53_RS04020 0.84 -0.9 942,052 + -2.5 942,052 + -2.2 942,052 + +0.5 942,052 + -0.7 942,052 + -1.3 942,052 + +1.1 942,053 - -1.0 942,053 - +0.8 942,053 - +0.2 942,053 - -1.5 942,053 - -0.4 942,166 + -0.0 942,166 + -0.5 942,166 + +1.1 942,166 + +0.0 942,166 + +1.9 942,167 - -2.2 942,252 - -0.9 942,425 + LRK53_RS04025 0.14 -0.7 942,426 - LRK53_RS04025 0.14 -1.1 942,426 - LRK53_RS04025 0.14 -0.6 942,640 + LRK53_RS04025 0.28 -1.5 942,640 + LRK53_RS04025 0.28 +0.6 942,640 + LRK53_RS04025 0.28 -1.1 942,640 + LRK53_RS04025 0.28 -1.2 942,640 + LRK53_RS04025 0.28 -0.3 942,640 + LRK53_RS04025 0.28 -0.2 942,640 + LRK53_RS04025 0.28 -0.2 942,640 + LRK53_RS04025 0.28 -1.4 942,640 + LRK53_RS04025 0.28 -0.0 942,640 + LRK53_RS04025 0.28 -1.4 942,640 + LRK53_RS04025 0.28 -2.0 942,640 + LRK53_RS04025 0.28 -1.8 942,641 - LRK53_RS04025 0.28 -1.0 942,641 - LRK53_RS04025 0.28 -3.4 942,641 - LRK53_RS04025 0.28 -1.7 942,641 - LRK53_RS04025 0.28 -2.0 942,641 - LRK53_RS04025 0.28 -1.5 942,641 - LRK53_RS04025 0.28 -1.7 942,641 - LRK53_RS04025 0.28 +0.1 942,641 - LRK53_RS04025 0.28 -0.6 942,641 - LRK53_RS04025 0.28 -2.2 942,641 - LRK53_RS04025 0.28 -2.5 942,641 - LRK53_RS04025 0.28 +0.6 942,641 - LRK53_RS04025 0.28 -1.7 942,641 - LRK53_RS04025 0.28 -1.3 942,674 + LRK53_RS04025 0.30 -1.8 942,674 + LRK53_RS04025 0.30 +0.8 942,674 + LRK53_RS04025 0.30 -0.5 942,674 + LRK53_RS04025 0.30 -1.6 942,674 + LRK53_RS04025 0.30 -0.7 942,674 + LRK53_RS04025 0.30 -2.8 942,674 + LRK53_RS04025 0.30 +0.2 942,674 + LRK53_RS04025 0.30 -1.2 942,674 + LRK53_RS04025 0.30 -1.5 942,675 - LRK53_RS04025 0.30 +1.5 942,675 - LRK53_RS04025 0.30 -0.9 942,675 - LRK53_RS04025 0.30 -1.1 942,675 - LRK53_RS04025 0.30 +0.3 942,675 - LRK53_RS04025 0.30 -1.4 942,675 - LRK53_RS04025 0.30 -0.0 942,675 - LRK53_RS04025 0.30 -0.0 942,675 - LRK53_RS04025 0.30 -0.6 942,675 - LRK53_RS04025 0.30 -1.7 942,716 + LRK53_RS04025 0.33 -0.5 942,716 + LRK53_RS04025 0.33 +0.3 942,717 - LRK53_RS04025 0.33 -0.8 942,717 - LRK53_RS04025 0.33 +1.0 942,787 + LRK53_RS04025 0.37 -1.5 943,699 + -1.8 943,699 + -1.3 943,699 + -1.5 943,699 + +1.1 943,699 + -0.1 943,699 + -2.4 943,699 + -0.7 943,700 - -0.0 943,700 - -0.2 943,700 - -3.2 943,700 - -0.2 943,700 - +0.4 943,700 - +0.3 943,700 - -3.3 943,700 - -1.8 943,700 - -0.5 943,700 - -0.8 943,843 + +0.5 943,844 - -1.1 943,844 - +0.5 943,844 - -0.4 943,844 - +0.1 943,844 - -1.1 943,919 + -0.8 943,920 - -2.1 943,920 - -1.7 943,920 - -0.1 944,017 + LRK53_RS04030 0.15 -1.0 944,017 + LRK53_RS04030 0.15 -0.3 944,018 - LRK53_RS04030 0.15 -2.3 944,018 - LRK53_RS04030 0.15 -0.2 944,018 - LRK53_RS04030 0.15 -1.8 944,018 - LRK53_RS04030 0.15 +0.8 944,018 - LRK53_RS04030 0.15 -2.0 944,018 - LRK53_RS04030 0.15 +0.1 944,119 + LRK53_RS04030 0.21 +0.5 944,119 + LRK53_RS04030 0.21 -0.4 944,119 + LRK53_RS04030 0.21 +0.0 944,119 + LRK53_RS04030 0.21 -1.1 944,119 + LRK53_RS04030 0.21 -0.9 944,119 + LRK53_RS04030 0.21 -0.1 944,119 + LRK53_RS04030 0.21 -1.7 944,119 + LRK53_RS04030 0.21 -1.9 944,120 - LRK53_RS04030 0.21 -1.7 944,120 - LRK53_RS04030 0.21 -0.8 944,120 - LRK53_RS04030 0.21 -1.4 944,120 - LRK53_RS04030 0.21 -0.2 944,120 - LRK53_RS04030 0.21 -0.3 944,120 - LRK53_RS04030 0.21 -2.4 944,120 - LRK53_RS04030 0.21 -1.3 944,120 - LRK53_RS04030 0.21 -1.0 944,147 - LRK53_RS04030 0.23 +2.1 944,230 + LRK53_RS04030 0.28 -1.9 944,230 + LRK53_RS04030 0.28 -0.5 944,230 + LRK53_RS04030 0.28 -2.4 944,230 + LRK53_RS04030 0.28 -2.3 944,230 + LRK53_RS04030 0.28 +1.2 944,230 + LRK53_RS04030 0.28 -2.1 944,230 + LRK53_RS04030 0.28 -3.3 944,230 + LRK53_RS04030 0.28 -2.1 944,230 + LRK53_RS04030 0.28 -1.1 944,231 - LRK53_RS04030 0.28 +1.7 944,231 - LRK53_RS04030 0.28 -1.2 944,302 + LRK53_RS04030 0.33 -0.6 944,302 + LRK53_RS04030 0.33 -0.8 944,303 - LRK53_RS04030 0.33 -1.6 944,303 - LRK53_RS04030 0.33 -1.2 944,660 - LRK53_RS04030 0.55 -2.7
Or see this region's nucleotide sequence