Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03870 and LRK53_RS03875 are separated by 58 nucleotides LRK53_RS03875 and LRK53_RS03880 overlap by 4 nucleotides LRK53_RS03880 and LRK53_RS03885 overlap by 14 nucleotides
LRK53_RS03870: LRK53_RS03870 - DUF3375 domain-containing protein, at 906,451 to 907,914
_RS03870
LRK53_RS03875: LRK53_RS03875 - DUF4194 domain-containing protein, at 907,973 to 908,590
_RS03875
LRK53_RS03880: LRK53_RS03880 - ATP-binding protein, at 908,587 to 911,958
_RS03880
LRK53_RS03885: LRK53_RS03885 - DUF3322 and DUF2220 domain-containing protein, at 911,945 to 913,099
_RS03885
Position (kb) 908
909
910
911
912 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 907.735 kb on + strand, within LRK53_RS03870 at 907.735 kb on + strand, within LRK53_RS03870 at 907.735 kb on + strand, within LRK53_RS03870 at 907.736 kb on - strand, within LRK53_RS03870 at 907.771 kb on + strand at 907.771 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 908.345 kb on + strand, within LRK53_RS03875 at 908.345 kb on + strand, within LRK53_RS03875 at 908.346 kb on - strand, within LRK53_RS03875 at 908.346 kb on - strand, within LRK53_RS03875 at 908.346 kb on - strand, within LRK53_RS03875 at 908.525 kb on + strand, within LRK53_RS03875 at 908.525 kb on + strand, within LRK53_RS03875 at 908.525 kb on + strand, within LRK53_RS03875 at 908.526 kb on - strand, within LRK53_RS03875 at 908.610 kb on + strand at 908.610 kb on + strand at 908.610 kb on + strand at 908.610 kb on + strand at 908.610 kb on + strand at 908.610 kb on + strand at 908.611 kb on - strand at 908.611 kb on - strand at 908.675 kb on + strand at 908.675 kb on + strand at 908.675 kb on + strand at 908.675 kb on + strand at 908.675 kb on + strand at 908.676 kb on - strand at 908.676 kb on - strand at 908.676 kb on - strand at 908.676 kb on - strand at 908.875 kb on + strand at 908.875 kb on + strand at 908.875 kb on + strand at 908.875 kb on + strand at 908.875 kb on + strand at 908.875 kb on + strand at 908.875 kb on + strand at 908.876 kb on - strand at 908.876 kb on - strand at 908.876 kb on - strand at 908.876 kb on - strand at 908.876 kb on - strand at 908.935 kb on + strand, within LRK53_RS03880 at 908.936 kb on - strand, within LRK53_RS03880 at 908.936 kb on - strand, within LRK53_RS03880 at 908.936 kb on - strand, within LRK53_RS03880 at 908.936 kb on - strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.065 kb on - strand, within LRK53_RS03880 at 909.065 kb on - strand, within LRK53_RS03880 at 909.065 kb on - strand, within LRK53_RS03880 at 909.065 kb on - strand, within LRK53_RS03880 at 909.065 kb on - strand, within LRK53_RS03880 at 909.065 kb on - strand, within LRK53_RS03880 at 909.065 kb on - strand, within LRK53_RS03880 at 909.184 kb on + strand, within LRK53_RS03880 at 909.185 kb on - strand, within LRK53_RS03880 at 909.209 kb on + strand, within LRK53_RS03880 at 909.209 kb on + strand, within LRK53_RS03880 at 909.210 kb on - strand, within LRK53_RS03880 at 909.210 kb on - strand, within LRK53_RS03880 at 909.210 kb on - strand, within LRK53_RS03880 at 909.210 kb on - strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.974 kb on - strand, within LRK53_RS03880 at 909.974 kb on - strand, within LRK53_RS03880 at 909.974 kb on - strand, within LRK53_RS03880 at 910.058 kb on + strand, within LRK53_RS03880 at 910.059 kb on - strand, within LRK53_RS03880 at 910.144 kb on + strand, within LRK53_RS03880 at 910.144 kb on + strand, within LRK53_RS03880 at 910.144 kb on + strand, within LRK53_RS03880 at 910.144 kb on + strand, within LRK53_RS03880 at 910.145 kb on - strand, within LRK53_RS03880 at 910.145 kb on - strand, within LRK53_RS03880 at 910.198 kb on + strand, within LRK53_RS03880 at 910.198 kb on + strand, within LRK53_RS03880 at 910.198 kb on + strand, within LRK53_RS03880 at 910.198 kb on + strand, within LRK53_RS03880 at 910.198 kb on + strand, within LRK53_RS03880 at 910.198 kb on + strand, within LRK53_RS03880 at 910.198 kb on + strand, within LRK53_RS03880 at 910.198 kb on + strand, within LRK53_RS03880 at 910.198 kb on + strand, within LRK53_RS03880 at 910.198 kb on + strand, within LRK53_RS03880 at 910.199 kb on - strand, within LRK53_RS03880 at 910.199 kb on - strand, within LRK53_RS03880 at 910.199 kb on - strand, within LRK53_RS03880 at 910.199 kb on - strand, within LRK53_RS03880 at 910.324 kb on + strand, within LRK53_RS03880 at 910.325 kb on - strand, within LRK53_RS03880 at 910.330 kb on + strand, within LRK53_RS03880 at 910.330 kb on + strand, within LRK53_RS03880 at 910.330 kb on + strand, within LRK53_RS03880 at 910.331 kb on - strand, within LRK53_RS03880 at 910.331 kb on - strand, within LRK53_RS03880 at 910.331 kb on - strand, within LRK53_RS03880 at 910.331 kb on - strand, within LRK53_RS03880 at 910.331 kb on - strand, within LRK53_RS03880 at 910.331 kb on - strand, within LRK53_RS03880 at 910.463 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.499 kb on - strand, within LRK53_RS03880 at 910.499 kb on - strand, within LRK53_RS03880 at 910.499 kb on - strand, within LRK53_RS03880 at 910.499 kb on - strand, within LRK53_RS03880 at 910.499 kb on - strand, within LRK53_RS03880 at 910.758 kb on + strand, within LRK53_RS03880 at 910.758 kb on + strand, within LRK53_RS03880 at 910.758 kb on + strand, within LRK53_RS03880 at 910.758 kb on + strand, within LRK53_RS03880 at 910.758 kb on + strand, within LRK53_RS03880 at 910.759 kb on - strand, within LRK53_RS03880 at 910.759 kb on - strand, within LRK53_RS03880 at 910.809 kb on + strand, within LRK53_RS03880 at 910.809 kb on + strand, within LRK53_RS03880 at 910.809 kb on + strand, within LRK53_RS03880 at 910.810 kb on - strand, within LRK53_RS03880 at 910.810 kb on - strand, within LRK53_RS03880 at 910.810 kb on - strand, within LRK53_RS03880 at 910.810 kb on - strand, within LRK53_RS03880 at 911.578 kb on + strand, within LRK53_RS03880 at 911.578 kb on + strand, within LRK53_RS03880 at 911.689 kb on + strand at 911.893 kb on + strand at 911.893 kb on + strand at 911.894 kb on - strand at 912.042 kb on + strand at 912.042 kb on + strand at 912.042 kb on + strand at 912.043 kb on - strand at 912.324 kb on - strand, within LRK53_RS03885 at 912.324 kb on - strand, within LRK53_RS03885 at 912.324 kb on - strand, within LRK53_RS03885 at 912.324 kb on - strand, within LRK53_RS03885 at 912.324 kb on - strand, within LRK53_RS03885 at 912.749 kb on + strand, within LRK53_RS03885 at 912.750 kb on - strand, within LRK53_RS03885 at 912.774 kb on + strand, within LRK53_RS03885 at 912.774 kb on + strand, within LRK53_RS03885 at 912.774 kb on + strand, within LRK53_RS03885 at 912.774 kb on + strand, within LRK53_RS03885 at 912.774 kb on + strand, within LRK53_RS03885 at 912.774 kb on + strand, within LRK53_RS03885 at 912.775 kb on - strand, within LRK53_RS03885 at 912.775 kb on - strand, within LRK53_RS03885 at 912.775 kb on - strand, within LRK53_RS03885 at 912.775 kb on - strand, within LRK53_RS03885 at 912.775 kb on - strand, within LRK53_RS03885 at 912.775 kb on - strand, within LRK53_RS03885 at 912.806 kb on + strand, within LRK53_RS03885 at 912.806 kb on + strand, within LRK53_RS03885 at 912.806 kb on + strand, within LRK53_RS03885 at 912.807 kb on - strand, within LRK53_RS03885 at 912.807 kb on - strand, within LRK53_RS03885 at 912.807 kb on - strand, within LRK53_RS03885 at 912.807 kb on - strand, within LRK53_RS03885 at 912.807 kb on - strand, within LRK53_RS03885
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 907,735 + LRK53_RS03870 0.88 +0.2 907,735 + LRK53_RS03870 0.88 -0.3 907,735 + LRK53_RS03870 0.88 -1.4 907,736 - LRK53_RS03870 0.88 +0.3 907,771 + +1.2 907,771 + +2.3 907,879 + -0.5 907,879 + -1.0 907,879 + -0.8 907,879 + -1.5 907,879 + -3.2 907,879 + -0.7 907,879 + +0.4 907,879 + -2.3 907,879 + +1.2 907,879 + -0.6 907,879 + -0.9 907,879 + -1.0 907,880 - -2.3 907,880 - -2.5 907,880 - -2.1 907,880 - +0.1 907,880 - -1.2 907,880 - -0.4 907,880 - -0.6 907,880 - -0.1 907,880 - -0.3 908,345 + LRK53_RS03875 0.60 -0.5 908,345 + LRK53_RS03875 0.60 +0.4 908,346 - LRK53_RS03875 0.60 -0.6 908,346 - LRK53_RS03875 0.60 -2.7 908,346 - LRK53_RS03875 0.60 -0.6 908,525 + LRK53_RS03875 0.89 -0.5 908,525 + LRK53_RS03875 0.89 -0.4 908,525 + LRK53_RS03875 0.89 -0.8 908,526 - LRK53_RS03875 0.89 +0.6 908,610 + -0.2 908,610 + -0.6 908,610 + -0.6 908,610 + -1.7 908,610 + -0.2 908,610 + -0.9 908,611 - -0.6 908,611 - +0.5 908,675 + +0.4 908,675 + -2.3 908,675 + -0.5 908,675 + -1.4 908,675 + +0.2 908,676 - +0.5 908,676 - -1.9 908,676 - -1.6 908,676 - -0.4 908,875 + -0.3 908,875 + -0.4 908,875 + -0.0 908,875 + +0.8 908,875 + +0.2 908,875 + -0.9 908,875 + -1.0 908,876 - -1.0 908,876 - -0.9 908,876 - +1.2 908,876 - -3.6 908,876 - -0.0 908,935 + LRK53_RS03880 0.10 +1.6 908,936 - LRK53_RS03880 0.10 -0.5 908,936 - LRK53_RS03880 0.10 +0.6 908,936 - LRK53_RS03880 0.10 +0.1 908,936 - LRK53_RS03880 0.10 -1.3 909,064 + LRK53_RS03880 0.14 -2.5 909,064 + LRK53_RS03880 0.14 -0.5 909,064 + LRK53_RS03880 0.14 -1.7 909,064 + LRK53_RS03880 0.14 +0.8 909,064 + LRK53_RS03880 0.14 -0.4 909,064 + LRK53_RS03880 0.14 -1.2 909,064 + LRK53_RS03880 0.14 -0.2 909,065 - LRK53_RS03880 0.14 -1.5 909,065 - LRK53_RS03880 0.14 -0.0 909,065 - LRK53_RS03880 0.14 -2.0 909,065 - LRK53_RS03880 0.14 -0.4 909,065 - LRK53_RS03880 0.14 +0.2 909,065 - LRK53_RS03880 0.14 +1.2 909,065 - LRK53_RS03880 0.14 +2.2 909,184 + LRK53_RS03880 0.18 -0.6 909,185 - LRK53_RS03880 0.18 -0.4 909,209 + LRK53_RS03880 0.18 -1.2 909,209 + LRK53_RS03880 0.18 -2.1 909,210 - LRK53_RS03880 0.18 +0.2 909,210 - LRK53_RS03880 0.18 +0.8 909,210 - LRK53_RS03880 0.18 -1.3 909,210 - LRK53_RS03880 0.18 -0.8 909,973 + LRK53_RS03880 0.41 -2.4 909,973 + LRK53_RS03880 0.41 +0.6 909,973 + LRK53_RS03880 0.41 -0.6 909,973 + LRK53_RS03880 0.41 -0.5 909,973 + LRK53_RS03880 0.41 -2.3 909,973 + LRK53_RS03880 0.41 +0.8 909,973 + LRK53_RS03880 0.41 -1.8 909,973 + LRK53_RS03880 0.41 -0.6 909,973 + LRK53_RS03880 0.41 +0.7 909,973 + LRK53_RS03880 0.41 -0.3 909,973 + LRK53_RS03880 0.41 -2.8 909,973 + LRK53_RS03880 0.41 +0.7 909,974 - LRK53_RS03880 0.41 -1.6 909,974 - LRK53_RS03880 0.41 +0.4 909,974 - LRK53_RS03880 0.41 -0.6 910,058 + LRK53_RS03880 0.44 -0.7 910,059 - LRK53_RS03880 0.44 -0.9 910,144 + LRK53_RS03880 0.46 -0.1 910,144 + LRK53_RS03880 0.46 +0.7 910,144 + LRK53_RS03880 0.46 -2.2 910,144 + LRK53_RS03880 0.46 -2.3 910,145 - LRK53_RS03880 0.46 +1.4 910,145 - LRK53_RS03880 0.46 -1.0 910,198 + LRK53_RS03880 0.48 -1.4 910,198 + LRK53_RS03880 0.48 -0.3 910,198 + LRK53_RS03880 0.48 -2.4 910,198 + LRK53_RS03880 0.48 +0.6 910,198 + LRK53_RS03880 0.48 -0.2 910,198 + LRK53_RS03880 0.48 -0.7 910,198 + LRK53_RS03880 0.48 +0.7 910,198 + LRK53_RS03880 0.48 -1.8 910,198 + LRK53_RS03880 0.48 -1.2 910,198 + LRK53_RS03880 0.48 -0.6 910,199 - LRK53_RS03880 0.48 -2.6 910,199 - LRK53_RS03880 0.48 -1.1 910,199 - LRK53_RS03880 0.48 -1.0 910,199 - LRK53_RS03880 0.48 -1.1 910,324 + LRK53_RS03880 0.52 -2.0 910,325 - LRK53_RS03880 0.52 -0.9 910,330 + LRK53_RS03880 0.52 +0.7 910,330 + LRK53_RS03880 0.52 -2.0 910,330 + LRK53_RS03880 0.52 -1.5 910,331 - LRK53_RS03880 0.52 -0.8 910,331 - LRK53_RS03880 0.52 -0.0 910,331 - LRK53_RS03880 0.52 +0.6 910,331 - LRK53_RS03880 0.52 -2.1 910,331 - LRK53_RS03880 0.52 -2.1 910,331 - LRK53_RS03880 0.52 -0.7 910,463 + LRK53_RS03880 0.56 -1.7 910,498 + LRK53_RS03880 0.57 -0.3 910,498 + LRK53_RS03880 0.57 -1.7 910,498 + LRK53_RS03880 0.57 +1.4 910,498 + LRK53_RS03880 0.57 -2.2 910,498 + LRK53_RS03880 0.57 +0.6 910,498 + LRK53_RS03880 0.57 -0.5 910,498 + LRK53_RS03880 0.57 +0.4 910,498 + LRK53_RS03880 0.57 -0.8 910,498 + LRK53_RS03880 0.57 -0.2 910,498 + LRK53_RS03880 0.57 +0.8 910,498 + LRK53_RS03880 0.57 -0.6 910,498 + LRK53_RS03880 0.57 -2.0 910,499 - LRK53_RS03880 0.57 -0.9 910,499 - LRK53_RS03880 0.57 -1.3 910,499 - LRK53_RS03880 0.57 -0.2 910,499 - LRK53_RS03880 0.57 -0.3 910,499 - LRK53_RS03880 0.57 -0.7 910,758 + LRK53_RS03880 0.64 -0.5 910,758 + LRK53_RS03880 0.64 -2.2 910,758 + LRK53_RS03880 0.64 -0.1 910,758 + LRK53_RS03880 0.64 -0.4 910,758 + LRK53_RS03880 0.64 +0.9 910,759 - LRK53_RS03880 0.64 -1.6 910,759 - LRK53_RS03880 0.64 -0.8 910,809 + LRK53_RS03880 0.66 +0.3 910,809 + LRK53_RS03880 0.66 -1.3 910,809 + LRK53_RS03880 0.66 -0.4 910,810 - LRK53_RS03880 0.66 +1.7 910,810 - LRK53_RS03880 0.66 -1.3 910,810 - LRK53_RS03880 0.66 -0.0 910,810 - LRK53_RS03880 0.66 -0.4 911,578 + LRK53_RS03880 0.89 -1.0 911,578 + LRK53_RS03880 0.89 -1.8 911,689 + -1.8 911,893 + -1.7 911,893 + -0.6 911,894 - +2.2 912,042 + -1.9 912,042 + -0.3 912,042 + +0.4 912,043 - -0.3 912,324 - LRK53_RS03885 0.33 -1.3 912,324 - LRK53_RS03885 0.33 +0.4 912,324 - LRK53_RS03885 0.33 -0.8 912,324 - LRK53_RS03885 0.33 +1.6 912,324 - LRK53_RS03885 0.33 -0.5 912,749 + LRK53_RS03885 0.70 +0.2 912,750 - LRK53_RS03885 0.70 -0.6 912,774 + LRK53_RS03885 0.72 -2.8 912,774 + LRK53_RS03885 0.72 -1.1 912,774 + LRK53_RS03885 0.72 -1.5 912,774 + LRK53_RS03885 0.72 +1.2 912,774 + LRK53_RS03885 0.72 +0.4 912,774 + LRK53_RS03885 0.72 -1.4 912,775 - LRK53_RS03885 0.72 +0.4 912,775 - LRK53_RS03885 0.72 -1.8 912,775 - LRK53_RS03885 0.72 -1.1 912,775 - LRK53_RS03885 0.72 -0.0 912,775 - LRK53_RS03885 0.72 -0.2 912,775 - LRK53_RS03885 0.72 -0.7 912,806 + LRK53_RS03885 0.75 -1.1 912,806 + LRK53_RS03885 0.75 -1.4 912,806 + LRK53_RS03885 0.75 -1.7 912,807 - LRK53_RS03885 0.75 +0.4 912,807 - LRK53_RS03885 0.75 -0.8 912,807 - LRK53_RS03885 0.75 -0.6 912,807 - LRK53_RS03885 0.75 -0.3 912,807 - LRK53_RS03885 0.75 +2.2
Or see this region's nucleotide sequence