Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03185

Experiment: planktonic; Day4; SGW;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03180 and LRK53_RS03185 are separated by 31 nucleotidesLRK53_RS03185 and LRK53_RS03190 overlap by 4 nucleotides LRK53_RS03180: LRK53_RS03180 - sugar phosphate isomerase/epimerase, at 743,245 to 744,486 _RS03180 LRK53_RS03185: LRK53_RS03185 - S-ribosylhomocysteine lyase, at 744,518 to 745,000 _RS03185 LRK53_RS03190: LRK53_RS03190 - sedoheptulose 7-phosphate cyclase, at 744,997 to 746,148 _RS03190 Position (kb) 744 745 746Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.737 kb on + strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.738 kb on - strand, within LRK53_RS03180at 743.824 kb on + strand, within LRK53_RS03180at 743.824 kb on + strand, within LRK53_RS03180at 743.825 kb on - strand, within LRK53_RS03180at 743.825 kb on - strand, within LRK53_RS03180at 743.842 kb on + strand, within LRK53_RS03180at 743.842 kb on + strand, within LRK53_RS03180at 743.842 kb on + strand, within LRK53_RS03180at 743.843 kb on - strand, within LRK53_RS03180at 743.843 kb on - strand, within LRK53_RS03180at 743.980 kb on + strand, within LRK53_RS03180at 743.980 kb on + strand, within LRK53_RS03180at 743.980 kb on + strand, within LRK53_RS03180at 743.980 kb on + strand, within LRK53_RS03180at 743.980 kb on + strand, within LRK53_RS03180at 743.980 kb on + strand, within LRK53_RS03180at 743.980 kb on + strand, within LRK53_RS03180at 743.980 kb on + strand, within LRK53_RS03180at 743.980 kb on + strand, within LRK53_RS03180at 743.980 kb on + strand, within LRK53_RS03180at 743.980 kb on + strand, within LRK53_RS03180at 743.980 kb on + strand, within LRK53_RS03180at 743.980 kb on + strand, within LRK53_RS03180at 743.981 kb on - strand, within LRK53_RS03180at 743.981 kb on - strand, within LRK53_RS03180at 743.981 kb on - strand, within LRK53_RS03180at 743.981 kb on - strand, within LRK53_RS03180at 743.981 kb on - strand, within LRK53_RS03180at 743.981 kb on - strand, within LRK53_RS03180at 743.981 kb on - strand, within LRK53_RS03180at 744.001 kb on + strand, within LRK53_RS03180at 744.001 kb on + strand, within LRK53_RS03180at 744.001 kb on + strand, within LRK53_RS03180at 744.002 kb on - strand, within LRK53_RS03180at 744.002 kb on - strand, within LRK53_RS03180at 744.002 kb on - strand, within LRK53_RS03180at 744.002 kb on - strand, within LRK53_RS03180at 744.002 kb on - strand, within LRK53_RS03180at 744.031 kb on + strand, within LRK53_RS03180at 744.031 kb on + strand, within LRK53_RS03180at 744.031 kb on + strand, within LRK53_RS03180at 744.031 kb on + strand, within LRK53_RS03180at 744.032 kb on - strand, within LRK53_RS03180at 744.127 kb on + strand, within LRK53_RS03180at 744.139 kb on + strand, within LRK53_RS03180at 744.139 kb on + strand, within LRK53_RS03180at 744.139 kb on + strand, within LRK53_RS03180at 744.178 kb on + strand, within LRK53_RS03180at 744.178 kb on + strand, within LRK53_RS03180at 744.178 kb on + strand, within LRK53_RS03180at 744.179 kb on - strand, within LRK53_RS03180at 744.179 kb on - strand, within LRK53_RS03180at 744.179 kb on - strand, within LRK53_RS03180at 744.409 kb on + strandat 744.409 kb on + strandat 744.409 kb on + strandat 744.409 kb on + strandat 744.410 kb on - strandat 744.410 kb on - strandat 744.451 kb on + strandat 744.641 kb on + strand, within LRK53_RS03185at 744.797 kb on + strand, within LRK53_RS03185at 744.797 kb on + strand, within LRK53_RS03185at 744.798 kb on - strand, within LRK53_RS03185at 744.890 kb on + strand, within LRK53_RS03185at 744.891 kb on - strand, within LRK53_RS03185at 744.963 kb on + strandat 744.963 kb on + strandat 744.963 kb on + strandat 744.964 kb on - strandat 744.964 kb on - strandat 744.964 kb on - strandat 744.964 kb on - strandat 745.051 kb on + strandat 745.051 kb on + strandat 745.052 kb on - strandat 745.052 kb on - strandat 745.052 kb on - strandat 745.189 kb on + strand, within LRK53_RS03190at 745.189 kb on + strand, within LRK53_RS03190at 745.355 kb on + strand, within LRK53_RS03190at 745.355 kb on + strand, within LRK53_RS03190at 745.355 kb on + strand, within LRK53_RS03190at 745.356 kb on - strand, within LRK53_RS03190at 745.379 kb on - strand, within LRK53_RS03190at 745.379 kb on - strand, within LRK53_RS03190at 745.426 kb on + strand, within LRK53_RS03190at 745.427 kb on - strand, within LRK53_RS03190at 745.427 kb on - strand, within LRK53_RS03190at 745.773 kb on + strand, within LRK53_RS03190at 745.773 kb on + strand, within LRK53_RS03190at 745.773 kb on + strand, within LRK53_RS03190at 745.773 kb on + strand, within LRK53_RS03190at 745.773 kb on + strand, within LRK53_RS03190at 745.773 kb on + strand, within LRK53_RS03190at 745.773 kb on + strand, within LRK53_RS03190at 745.773 kb on + strand, within LRK53_RS03190at 745.774 kb on - strand, within LRK53_RS03190at 745.774 kb on - strand, within LRK53_RS03190at 745.774 kb on - strand, within LRK53_RS03190at 745.774 kb on - strand, within LRK53_RS03190at 745.774 kb on - strand, within LRK53_RS03190at 745.774 kb on - strand, within LRK53_RS03190at 745.783 kb on + strand, within LRK53_RS03190at 745.783 kb on + strand, within LRK53_RS03190at 745.784 kb on - strand, within LRK53_RS03190at 745.784 kb on - strand, within LRK53_RS03190

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day4; SGW;
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743,737 + LRK53_RS03180 0.40 +1.2
743,737 + LRK53_RS03180 0.40 +0.5
743,737 + LRK53_RS03180 0.40 -1.3
743,737 + LRK53_RS03180 0.40 -0.7
743,737 + LRK53_RS03180 0.40 -1.6
743,737 + LRK53_RS03180 0.40 -0.0
743,737 + LRK53_RS03180 0.40 -0.8
743,737 + LRK53_RS03180 0.40 -1.1
743,737 + LRK53_RS03180 0.40 -0.0
743,737 + LRK53_RS03180 0.40 -0.1
743,737 + LRK53_RS03180 0.40 -0.9
743,737 + LRK53_RS03180 0.40 -0.4
743,737 + LRK53_RS03180 0.40 +0.8
743,737 + LRK53_RS03180 0.40 -1.3
743,737 + LRK53_RS03180 0.40 +0.5
743,737 + LRK53_RS03180 0.40 -0.6
743,737 + LRK53_RS03180 0.40 -1.3
743,737 + LRK53_RS03180 0.40 -1.1
743,737 + LRK53_RS03180 0.40 -0.1
743,737 + LRK53_RS03180 0.40 -0.3
743,737 + LRK53_RS03180 0.40 -0.1
743,737 + LRK53_RS03180 0.40 -1.1
743,737 + LRK53_RS03180 0.40 -1.3
743,737 + LRK53_RS03180 0.40 -0.1
743,737 + LRK53_RS03180 0.40 +0.4
743,737 + LRK53_RS03180 0.40 -1.5
743,737 + LRK53_RS03180 0.40 -0.4
743,737 + LRK53_RS03180 0.40 -0.4
743,737 + LRK53_RS03180 0.40 -0.3
743,737 + LRK53_RS03180 0.40 -0.7
743,737 + LRK53_RS03180 0.40 -1.1
743,737 + LRK53_RS03180 0.40 -0.6
743,737 + LRK53_RS03180 0.40 -2.5
743,737 + LRK53_RS03180 0.40 -1.0
743,737 + LRK53_RS03180 0.40 +0.0
743,737 + LRK53_RS03180 0.40 -1.2
743,737 + LRK53_RS03180 0.40 -0.8
743,737 + LRK53_RS03180 0.40 +0.2
743,737 + LRK53_RS03180 0.40 +1.4
743,737 + LRK53_RS03180 0.40 -1.0
743,737 + LRK53_RS03180 0.40 -1.9
743,737 + LRK53_RS03180 0.40 -0.3
743,737 + LRK53_RS03180 0.40 -1.7
743,737 + LRK53_RS03180 0.40 -0.4
743,738 - LRK53_RS03180 0.40 -0.4
743,738 - LRK53_RS03180 0.40 -1.0
743,738 - LRK53_RS03180 0.40 -1.0
743,738 - LRK53_RS03180 0.40 -1.4
743,738 - LRK53_RS03180 0.40 -2.0
743,738 - LRK53_RS03180 0.40 +0.0
743,738 - LRK53_RS03180 0.40 -0.2
743,738 - LRK53_RS03180 0.40 -2.0
743,738 - LRK53_RS03180 0.40 -0.4
743,738 - LRK53_RS03180 0.40 -0.1
743,738 - LRK53_RS03180 0.40 +0.2
743,738 - LRK53_RS03180 0.40 -1.4
743,738 - LRK53_RS03180 0.40 +0.2
743,738 - LRK53_RS03180 0.40 -0.3
743,738 - LRK53_RS03180 0.40 -0.3
743,738 - LRK53_RS03180 0.40 -0.4
743,738 - LRK53_RS03180 0.40 -0.9
743,738 - LRK53_RS03180 0.40 -0.1
743,738 - LRK53_RS03180 0.40 +0.2
743,738 - LRK53_RS03180 0.40 -0.3
743,738 - LRK53_RS03180 0.40 -0.8
743,738 - LRK53_RS03180 0.40 -0.9
743,738 - LRK53_RS03180 0.40 -0.4
743,738 - LRK53_RS03180 0.40 -1.8
743,738 - LRK53_RS03180 0.40 -1.0
743,738 - LRK53_RS03180 0.40 -1.3
743,738 - LRK53_RS03180 0.40 -2.3
743,738 - LRK53_RS03180 0.40 -2.1
743,738 - LRK53_RS03180 0.40 -2.1
743,738 - LRK53_RS03180 0.40 -1.3
743,738 - LRK53_RS03180 0.40 -1.0
743,738 - LRK53_RS03180 0.40 -0.7
743,738 - LRK53_RS03180 0.40 +2.1
743,738 - LRK53_RS03180 0.40 +0.4
743,738 - LRK53_RS03180 0.40 -0.9
743,738 - LRK53_RS03180 0.40 -1.7
743,738 - LRK53_RS03180 0.40 -0.4
743,738 - LRK53_RS03180 0.40 -1.3
743,738 - LRK53_RS03180 0.40 -2.5
743,738 - LRK53_RS03180 0.40 +0.1
743,738 - LRK53_RS03180 0.40 -1.3
743,738 - LRK53_RS03180 0.40 +1.3
743,738 - LRK53_RS03180 0.40 -1.0
743,738 - LRK53_RS03180 0.40 -0.5
743,738 - LRK53_RS03180 0.40 -0.5
743,738 - LRK53_RS03180 0.40 -0.4
743,738 - LRK53_RS03180 0.40 +0.0
743,738 - LRK53_RS03180 0.40 -1.3
743,738 - LRK53_RS03180 0.40 +0.4
743,824 + LRK53_RS03180 0.47 -0.3
743,824 + LRK53_RS03180 0.47 +0.3
743,825 - LRK53_RS03180 0.47 -1.1
743,825 - LRK53_RS03180 0.47 +0.3
743,842 + LRK53_RS03180 0.48 -1.7
743,842 + LRK53_RS03180 0.48 -0.1
743,842 + LRK53_RS03180 0.48 -0.6
743,843 - LRK53_RS03180 0.48 +0.0
743,843 - LRK53_RS03180 0.48 -2.8
743,980 + LRK53_RS03180 0.59 +1.2
743,980 + LRK53_RS03180 0.59 -1.4
743,980 + LRK53_RS03180 0.59 -1.5
743,980 + LRK53_RS03180 0.59 -0.3
743,980 + LRK53_RS03180 0.59 +0.0
743,980 + LRK53_RS03180 0.59 -0.9
743,980 + LRK53_RS03180 0.59 -0.7
743,980 + LRK53_RS03180 0.59 -1.7
743,980 + LRK53_RS03180 0.59 -0.5
743,980 + LRK53_RS03180 0.59 -2.5
743,980 + LRK53_RS03180 0.59 -1.6
743,980 + LRK53_RS03180 0.59 +0.0
743,980 + LRK53_RS03180 0.59 -0.8
743,981 - LRK53_RS03180 0.59 -0.1
743,981 - LRK53_RS03180 0.59 -1.1
743,981 - LRK53_RS03180 0.59 -2.9
743,981 - LRK53_RS03180 0.59 +0.9
743,981 - LRK53_RS03180 0.59 -0.6
743,981 - LRK53_RS03180 0.59 -1.1
743,981 - LRK53_RS03180 0.59 -1.3
744,001 + LRK53_RS03180 0.61 -0.1
744,001 + LRK53_RS03180 0.61 +0.2
744,001 + LRK53_RS03180 0.61 -0.4
744,002 - LRK53_RS03180 0.61 -1.0
744,002 - LRK53_RS03180 0.61 -1.0
744,002 - LRK53_RS03180 0.61 -0.6
744,002 - LRK53_RS03180 0.61 +0.7
744,002 - LRK53_RS03180 0.61 -0.3
744,031 + LRK53_RS03180 0.63 -0.1
744,031 + LRK53_RS03180 0.63 -1.7
744,031 + LRK53_RS03180 0.63 -0.3
744,031 + LRK53_RS03180 0.63 -1.1
744,032 - LRK53_RS03180 0.63 -0.1
744,127 + LRK53_RS03180 0.71 -2.8
744,139 + LRK53_RS03180 0.72 +0.1
744,139 + LRK53_RS03180 0.72 -1.1
744,139 + LRK53_RS03180 0.72 -0.3
744,178 + LRK53_RS03180 0.75 -1.7
744,178 + LRK53_RS03180 0.75 -1.5
744,178 + LRK53_RS03180 0.75 -0.9
744,179 - LRK53_RS03180 0.75 -0.3
744,179 - LRK53_RS03180 0.75 -0.6
744,179 - LRK53_RS03180 0.75 -0.6
744,409 + -2.7
744,409 + -0.9
744,409 + -1.6
744,409 + -0.2
744,410 - +1.2
744,410 - -1.6
744,451 + -0.7
744,641 + LRK53_RS03185 0.25 -1.1
744,797 + LRK53_RS03185 0.58 -0.6
744,797 + LRK53_RS03185 0.58 -0.9
744,798 - LRK53_RS03185 0.58 -0.8
744,890 + LRK53_RS03185 0.77 -0.4
744,891 - LRK53_RS03185 0.77 -1.4
744,963 + -0.3
744,963 + -0.5
744,963 + +0.6
744,964 - -0.8
744,964 - +1.8
744,964 - -1.0
744,964 - -1.3
745,051 + -1.2
745,051 + -1.7
745,052 - +0.6
745,052 - +0.4
745,052 - -0.7
745,189 + LRK53_RS03190 0.17 -0.5
745,189 + LRK53_RS03190 0.17 -0.7
745,355 + LRK53_RS03190 0.31 +0.4
745,355 + LRK53_RS03190 0.31 -0.6
745,355 + LRK53_RS03190 0.31 -1.4
745,356 - LRK53_RS03190 0.31 -0.5
745,379 - LRK53_RS03190 0.33 -2.3
745,379 - LRK53_RS03190 0.33 -1.9
745,426 + LRK53_RS03190 0.37 +0.2
745,427 - LRK53_RS03190 0.37 +0.8
745,427 - LRK53_RS03190 0.37 -1.2
745,773 + LRK53_RS03190 0.67 +0.9
745,773 + LRK53_RS03190 0.67 -1.4
745,773 + LRK53_RS03190 0.67 -2.7
745,773 + LRK53_RS03190 0.67 -0.6
745,773 + LRK53_RS03190 0.67 -1.0
745,773 + LRK53_RS03190 0.67 -1.5
745,773 + LRK53_RS03190 0.67 +0.9
745,773 + LRK53_RS03190 0.67 -0.1
745,774 - LRK53_RS03190 0.67 -1.3
745,774 - LRK53_RS03190 0.67 -0.2
745,774 - LRK53_RS03190 0.67 +1.4
745,774 - LRK53_RS03190 0.67 -0.3
745,774 - LRK53_RS03190 0.67 -0.3
745,774 - LRK53_RS03190 0.67 +0.0
745,783 + LRK53_RS03190 0.68 -0.7
745,783 + LRK53_RS03190 0.68 +0.6
745,784 - LRK53_RS03190 0.68 -1.1
745,784 - LRK53_RS03190 0.68 -1.5

Or see this region's nucleotide sequence