Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03075

Experiment: planktonic; Day4; SGW;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03070 and LRK53_RS03075 are separated by 227 nucleotidesLRK53_RS03075 and LRK53_RS03080 overlap by 4 nucleotidesLRK53_RS03080 and LRK53_RS03085 are separated by 166 nucleotides LRK53_RS03070: LRK53_RS03070 - GGDEF domain-containing protein, at 715,847 to 716,983 _RS03070 LRK53_RS03075: LRK53_RS03075 - threonine ammonia-lyase, biosynthetic, at 717,211 to 718,761 _RS03075 LRK53_RS03080: LRK53_RS03080 - acetolactate synthase small subunit, at 718,758 to 719,006 _RS03080 LRK53_RS03085: LRK53_RS03085 - biosynthetic-type acetolactate synthase large subunit, at 719,173 to 721,029 _RS03085 Position (kb) 717 718 719Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 716.366 kb on + strand, within LRK53_RS03070at 716.366 kb on + strand, within LRK53_RS03070at 716.367 kb on - strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.375 kb on + strand, within LRK53_RS03070at 716.376 kb on - strand, within LRK53_RS03070at 716.376 kb on - strand, within LRK53_RS03070at 716.376 kb on - strand, within LRK53_RS03070at 716.376 kb on - strand, within LRK53_RS03070at 716.376 kb on - strand, within LRK53_RS03070at 716.423 kb on + strand, within LRK53_RS03070at 716.423 kb on + strand, within LRK53_RS03070at 716.423 kb on + strand, within LRK53_RS03070at 716.424 kb on - strand, within LRK53_RS03070at 716.424 kb on - strand, within LRK53_RS03070at 716.587 kb on + strand, within LRK53_RS03070at 716.587 kb on + strand, within LRK53_RS03070at 716.587 kb on + strand, within LRK53_RS03070at 716.587 kb on + strand, within LRK53_RS03070at 716.588 kb on - strand, within LRK53_RS03070at 716.591 kb on + strand, within LRK53_RS03070at 716.591 kb on + strand, within LRK53_RS03070at 716.591 kb on + strand, within LRK53_RS03070at 716.591 kb on + strand, within LRK53_RS03070at 716.591 kb on + strand, within LRK53_RS03070at 716.592 kb on - strand, within LRK53_RS03070at 716.592 kb on - strand, within LRK53_RS03070at 716.592 kb on - strand, within LRK53_RS03070at 716.592 kb on - strand, within LRK53_RS03070at 716.592 kb on - strand, within LRK53_RS03070at 716.603 kb on + strand, within LRK53_RS03070at 716.603 kb on + strand, within LRK53_RS03070at 716.603 kb on + strand, within LRK53_RS03070at 716.603 kb on + strand, within LRK53_RS03070at 716.603 kb on + strand, within LRK53_RS03070at 716.604 kb on - strand, within LRK53_RS03070at 716.604 kb on - strand, within LRK53_RS03070at 716.604 kb on - strand, within LRK53_RS03070at 716.604 kb on - strand, within LRK53_RS03070at 716.604 kb on - strand, within LRK53_RS03070at 716.604 kb on - strand, within LRK53_RS03070at 716.838 kb on - strand, within LRK53_RS03070at 716.876 kb on + strandat 716.877 kb on - strandat 716.877 kb on - strandat 716.877 kb on - strandat 716.877 kb on - strandat 716.877 kb on - strandat 716.877 kb on - strandat 716.877 kb on - strandat 716.879 kb on + strandat 716.879 kb on + strandat 716.880 kb on - strandat 716.880 kb on - strandat 716.995 kb on + strandat 716.996 kb on - strandat 717.452 kb on + strand, within LRK53_RS03075at 717.650 kb on + strand, within LRK53_RS03075at 717.650 kb on + strand, within LRK53_RS03075at 717.650 kb on + strand, within LRK53_RS03075at 717.650 kb on + strand, within LRK53_RS03075at 717.650 kb on + strand, within LRK53_RS03075at 717.650 kb on + strand, within LRK53_RS03075at 717.651 kb on - strand, within LRK53_RS03075at 717.651 kb on - strand, within LRK53_RS03075at 717.651 kb on - strand, within LRK53_RS03075at 717.651 kb on - strand, within LRK53_RS03075at 717.857 kb on + strand, within LRK53_RS03075at 717.857 kb on + strand, within LRK53_RS03075at 717.858 kb on - strand, within LRK53_RS03075at 717.858 kb on - strand, within LRK53_RS03075at 717.980 kb on + strand, within LRK53_RS03075at 717.980 kb on + strand, within LRK53_RS03075at 717.980 kb on + strand, within LRK53_RS03075at 717.980 kb on + strand, within LRK53_RS03075at 717.981 kb on - strand, within LRK53_RS03075at 717.981 kb on - strand, within LRK53_RS03075at 717.981 kb on - strand, within LRK53_RS03075at 717.981 kb on - strand, within LRK53_RS03075at 717.981 kb on - strand, within LRK53_RS03075at 718.352 kb on + strand, within LRK53_RS03075at 718.352 kb on + strand, within LRK53_RS03075at 718.353 kb on - strand, within LRK53_RS03075at 718.353 kb on - strand, within LRK53_RS03075at 718.565 kb on + strand, within LRK53_RS03075at 718.566 kb on - strand, within LRK53_RS03075at 718.566 kb on - strand, within LRK53_RS03075at 718.566 kb on - strand, within LRK53_RS03075at 718.566 kb on - strand, within LRK53_RS03075at 718.566 kb on - strand, within LRK53_RS03075at 718.566 kb on - strand, within LRK53_RS03075at 718.566 kb on - strand, within LRK53_RS03075at 718.688 kb on + strandat 718.688 kb on + strandat 718.688 kb on + strandat 718.688 kb on + strandat 718.689 kb on - strandat 718.689 kb on - strandat 718.689 kb on - strandat 718.924 kb on + strand, within LRK53_RS03080at 718.925 kb on - strand, within LRK53_RS03080at 719.113 kb on - strandat 719.255 kb on + strandat 719.255 kb on + strandat 719.256 kb on - strandat 719.256 kb on - strandat 719.283 kb on - strandat 719.477 kb on + strand, within LRK53_RS03085at 719.477 kb on + strand, within LRK53_RS03085at 719.477 kb on + strand, within LRK53_RS03085at 719.477 kb on + strand, within LRK53_RS03085at 719.477 kb on + strand, within LRK53_RS03085at 719.477 kb on + strand, within LRK53_RS03085at 719.478 kb on - strand, within LRK53_RS03085at 719.478 kb on - strand, within LRK53_RS03085at 719.550 kb on - strand, within LRK53_RS03085at 719.550 kb on - strand, within LRK53_RS03085at 719.726 kb on + strand, within LRK53_RS03085at 719.726 kb on + strand, within LRK53_RS03085at 719.726 kb on + strand, within LRK53_RS03085at 719.726 kb on + strand, within LRK53_RS03085at 719.726 kb on + strand, within LRK53_RS03085at 719.727 kb on - strand, within LRK53_RS03085at 719.727 kb on - strand, within LRK53_RS03085at 719.727 kb on - strand, within LRK53_RS03085at 719.727 kb on - strand, within LRK53_RS03085

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day4; SGW;
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716,366 + LRK53_RS03070 0.46 -1.1
716,366 + LRK53_RS03070 0.46 -2.9
716,367 - LRK53_RS03070 0.46 -2.6
716,375 + LRK53_RS03070 0.46 -2.1
716,375 + LRK53_RS03070 0.46 -0.5
716,375 + LRK53_RS03070 0.46 -0.8
716,375 + LRK53_RS03070 0.46 -3.3
716,375 + LRK53_RS03070 0.46 +0.4
716,375 + LRK53_RS03070 0.46 -1.0
716,375 + LRK53_RS03070 0.46 -1.1
716,375 + LRK53_RS03070 0.46 +2.0
716,375 + LRK53_RS03070 0.46 -1.6
716,375 + LRK53_RS03070 0.46 -0.0
716,375 + LRK53_RS03070 0.46 -0.9
716,376 - LRK53_RS03070 0.47 -0.0
716,376 - LRK53_RS03070 0.47 -1.7
716,376 - LRK53_RS03070 0.47 -1.0
716,376 - LRK53_RS03070 0.47 -0.3
716,376 - LRK53_RS03070 0.47 +0.1
716,423 + LRK53_RS03070 0.51 -1.1
716,423 + LRK53_RS03070 0.51 -1.5
716,423 + LRK53_RS03070 0.51 +0.9
716,424 - LRK53_RS03070 0.51 +0.1
716,424 - LRK53_RS03070 0.51 -1.9
716,587 + LRK53_RS03070 0.65 -0.7
716,587 + LRK53_RS03070 0.65 -2.8
716,587 + LRK53_RS03070 0.65 -0.9
716,587 + LRK53_RS03070 0.65 +0.8
716,588 - LRK53_RS03070 0.65 -1.8
716,591 + LRK53_RS03070 0.65 +1.2
716,591 + LRK53_RS03070 0.65 -1.1
716,591 + LRK53_RS03070 0.65 -1.3
716,591 + LRK53_RS03070 0.65 -2.8
716,591 + LRK53_RS03070 0.65 -0.9
716,592 - LRK53_RS03070 0.66 +0.7
716,592 - LRK53_RS03070 0.66 -1.8
716,592 - LRK53_RS03070 0.66 -1.9
716,592 - LRK53_RS03070 0.66 -1.1
716,592 - LRK53_RS03070 0.66 -0.6
716,603 + LRK53_RS03070 0.66 -0.9
716,603 + LRK53_RS03070 0.66 +0.9
716,603 + LRK53_RS03070 0.66 -0.3
716,603 + LRK53_RS03070 0.66 -1.1
716,603 + LRK53_RS03070 0.66 +0.8
716,604 - LRK53_RS03070 0.67 -0.9
716,604 - LRK53_RS03070 0.67 -0.8
716,604 - LRK53_RS03070 0.67 -2.5
716,604 - LRK53_RS03070 0.67 -2.1
716,604 - LRK53_RS03070 0.67 -2.9
716,604 - LRK53_RS03070 0.67 +0.3
716,838 - LRK53_RS03070 0.87 -0.2
716,876 + +2.0
716,877 - +0.0
716,877 - +0.7
716,877 - +0.2
716,877 - -0.8
716,877 - -0.7
716,877 - -0.8
716,877 - -2.0
716,879 + -0.7
716,879 + -1.9
716,880 - +1.5
716,880 - -1.9
716,995 + -0.9
716,996 - -1.5
717,452 + LRK53_RS03075 0.16 -2.3
717,650 + LRK53_RS03075 0.28 -0.3
717,650 + LRK53_RS03075 0.28 +0.2
717,650 + LRK53_RS03075 0.28 -1.8
717,650 + LRK53_RS03075 0.28 -0.9
717,650 + LRK53_RS03075 0.28 -0.2
717,650 + LRK53_RS03075 0.28 +0.2
717,651 - LRK53_RS03075 0.28 -1.5
717,651 - LRK53_RS03075 0.28 -2.2
717,651 - LRK53_RS03075 0.28 -0.8
717,651 - LRK53_RS03075 0.28 -0.2
717,857 + LRK53_RS03075 0.42 -0.8
717,857 + LRK53_RS03075 0.42 -3.1
717,858 - LRK53_RS03075 0.42 -0.8
717,858 - LRK53_RS03075 0.42 -1.2
717,980 + LRK53_RS03075 0.50 -2.4
717,980 + LRK53_RS03075 0.50 -0.6
717,980 + LRK53_RS03075 0.50 -0.8
717,980 + LRK53_RS03075 0.50 -1.0
717,981 - LRK53_RS03075 0.50 -2.6
717,981 - LRK53_RS03075 0.50 +0.3
717,981 - LRK53_RS03075 0.50 -2.1
717,981 - LRK53_RS03075 0.50 -0.3
717,981 - LRK53_RS03075 0.50 -1.6
718,352 + LRK53_RS03075 0.74 -0.8
718,352 + LRK53_RS03075 0.74 -1.2
718,353 - LRK53_RS03075 0.74 +0.6
718,353 - LRK53_RS03075 0.74 -0.2
718,565 + LRK53_RS03075 0.87 +0.1
718,566 - LRK53_RS03075 0.87 -2.2
718,566 - LRK53_RS03075 0.87 -1.2
718,566 - LRK53_RS03075 0.87 -1.5
718,566 - LRK53_RS03075 0.87 -2.0
718,566 - LRK53_RS03075 0.87 +0.4
718,566 - LRK53_RS03075 0.87 -3.1
718,566 - LRK53_RS03075 0.87 +0.1
718,688 + -0.3
718,688 + +0.4
718,688 + -0.3
718,688 + -2.6
718,689 - -0.0
718,689 - +0.2
718,689 - -1.1
718,924 + LRK53_RS03080 0.67 -1.5
718,925 - LRK53_RS03080 0.67 -0.1
719,113 - -1.7
719,255 + -0.5
719,255 + -0.7
719,256 - -0.1
719,256 - -1.0
719,283 - -0.9
719,477 + LRK53_RS03085 0.16 -1.2
719,477 + LRK53_RS03085 0.16 -2.2
719,477 + LRK53_RS03085 0.16 +1.1
719,477 + LRK53_RS03085 0.16 -1.2
719,477 + LRK53_RS03085 0.16 +0.2
719,477 + LRK53_RS03085 0.16 -0.5
719,478 - LRK53_RS03085 0.16 -0.5
719,478 - LRK53_RS03085 0.16 -1.0
719,550 - LRK53_RS03085 0.20 -0.2
719,550 - LRK53_RS03085 0.20 -0.3
719,726 + LRK53_RS03085 0.30 -0.8
719,726 + LRK53_RS03085 0.30 -3.0
719,726 + LRK53_RS03085 0.30 -0.4
719,726 + LRK53_RS03085 0.30 +0.9
719,726 + LRK53_RS03085 0.30 +0.2
719,727 - LRK53_RS03085 0.30 -0.3
719,727 - LRK53_RS03085 0.30 +0.3
719,727 - LRK53_RS03085 0.30 +1.2
719,727 - LRK53_RS03085 0.30 -0.1

Or see this region's nucleotide sequence