Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03025

Experiment: planktonic; Day4; SGW;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03015 and LRK53_RS03020 are separated by 50 nucleotidesLRK53_RS03020 and LRK53_RS03025 overlap by 4 nucleotidesLRK53_RS03025 and LRK53_RS03030 overlap by 4 nucleotidesLRK53_RS03030 and LRK53_RS03035 are separated by 28 nucleotides LRK53_RS03015: LRK53_RS03015 - transporter, at 701,262 to 702,095 _RS03015 LRK53_RS03020: LRK53_RS03020 - malonyl-ACP O-methyltransferase BioC, at 702,146 to 703,024 _RS03020 LRK53_RS03025: LRK53_RS03025 - pimeloyl-ACP methyl ester esterase BioH, at 703,021 to 703,806 _RS03025 LRK53_RS03030: LRK53_RS03030 - sulfurtransferase, at 703,803 to 704,738 _RS03030 LRK53_RS03035: LRK53_RS03035 - 8-amino-7-oxononanoate synthase, at 704,767 to 705,972 _RS03035 Position (kb) 703 704Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 702.061 kb on - strandat 702.061 kb on - strandat 702.084 kb on + strandat 702.085 kb on - strandat 702.085 kb on - strandat 702.085 kb on - strandat 702.085 kb on - strandat 702.085 kb on - strandat 702.147 kb on + strandat 702.147 kb on + strandat 702.148 kb on - strandat 702.148 kb on - strandat 702.148 kb on - strandat 702.961 kb on - strandat 703.130 kb on + strand, within LRK53_RS03025at 703.130 kb on + strand, within LRK53_RS03025at 703.130 kb on + strand, within LRK53_RS03025at 703.131 kb on - strand, within LRK53_RS03025at 703.131 kb on - strand, within LRK53_RS03025at 703.216 kb on + strand, within LRK53_RS03025at 703.400 kb on + strand, within LRK53_RS03025at 703.400 kb on + strand, within LRK53_RS03025at 703.400 kb on + strand, within LRK53_RS03025at 703.401 kb on - strand, within LRK53_RS03025at 703.401 kb on - strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.682 kb on + strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.683 kb on - strand, within LRK53_RS03025at 703.796 kb on + strandat 703.796 kb on + strandat 703.796 kb on + strandat 703.797 kb on - strandat 703.797 kb on - strandat 703.797 kb on - strandat 703.797 kb on - strandat 703.797 kb on - strandat 703.819 kb on + strandat 704.101 kb on + strand, within LRK53_RS03030at 704.101 kb on + strand, within LRK53_RS03030at 704.101 kb on + strand, within LRK53_RS03030at 704.101 kb on + strand, within LRK53_RS03030at 704.102 kb on - strand, within LRK53_RS03030at 704.102 kb on - strand, within LRK53_RS03030at 704.102 kb on - strand, within LRK53_RS03030at 704.102 kb on - strand, within LRK53_RS03030at 704.102 kb on - strand, within LRK53_RS03030at 704.102 kb on - strand, within LRK53_RS03030at 704.102 kb on - strand, within LRK53_RS03030at 704.102 kb on - strand, within LRK53_RS03030at 704.128 kb on + strand, within LRK53_RS03030at 704.128 kb on + strand, within LRK53_RS03030at 704.128 kb on + strand, within LRK53_RS03030at 704.128 kb on + strand, within LRK53_RS03030at 704.128 kb on + strand, within LRK53_RS03030at 704.128 kb on + strand, within LRK53_RS03030at 704.128 kb on + strand, within LRK53_RS03030at 704.128 kb on + strand, within LRK53_RS03030at 704.129 kb on - strand, within LRK53_RS03030at 704.129 kb on - strand, within LRK53_RS03030at 704.129 kb on - strand, within LRK53_RS03030at 704.129 kb on - strand, within LRK53_RS03030at 704.129 kb on - strand, within LRK53_RS03030at 704.129 kb on - strand, within LRK53_RS03030at 704.129 kb on - strand, within LRK53_RS03030at 704.129 kb on - strand, within LRK53_RS03030at 704.197 kb on + strand, within LRK53_RS03030at 704.197 kb on + strand, within LRK53_RS03030at 704.198 kb on - strand, within LRK53_RS03030at 704.198 kb on - strand, within LRK53_RS03030at 704.198 kb on - strand, within LRK53_RS03030at 704.198 kb on - strand, within LRK53_RS03030at 704.198 kb on - strand, within LRK53_RS03030at 704.221 kb on + strand, within LRK53_RS03030at 704.222 kb on - strand, within LRK53_RS03030at 704.222 kb on - strand, within LRK53_RS03030at 704.317 kb on + strand, within LRK53_RS03030at 704.558 kb on + strand, within LRK53_RS03030at 704.558 kb on + strand, within LRK53_RS03030at 704.558 kb on + strand, within LRK53_RS03030at 704.558 kb on + strand, within LRK53_RS03030at 704.558 kb on + strand, within LRK53_RS03030at 704.558 kb on + strand, within LRK53_RS03030at 704.559 kb on - strand, within LRK53_RS03030at 704.559 kb on - strand, within LRK53_RS03030at 704.713 kb on + strandat 704.713 kb on + strandat 704.713 kb on + strandat 704.713 kb on + strandat 704.714 kb on - strandat 704.768 kb on + strandat 704.768 kb on + strandat 704.769 kb on - strandat 704.769 kb on - strandat 704.769 kb on - strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.771 kb on - strandat 704.771 kb on - strandat 704.771 kb on - strandat 704.771 kb on - strandat 704.771 kb on - strandat 704.771 kb on - strandat 704.771 kb on - strandat 704.771 kb on - strandat 704.771 kb on - strandat 704.771 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day4; SGW;
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702,061 - +2.5
702,061 - +0.4
702,084 + -0.0
702,085 - +1.5
702,085 - +1.2
702,085 - -0.3
702,085 - -1.9
702,085 - +0.2
702,147 + -0.0
702,147 + +0.1
702,148 - -0.8
702,148 - +0.7
702,148 - -1.2
702,961 - +0.5
703,130 + LRK53_RS03025 0.14 -1.0
703,130 + LRK53_RS03025 0.14 -1.3
703,130 + LRK53_RS03025 0.14 -0.3
703,131 - LRK53_RS03025 0.14 -0.7
703,131 - LRK53_RS03025 0.14 +0.1
703,216 + LRK53_RS03025 0.25 -0.3
703,400 + LRK53_RS03025 0.48 +0.1
703,400 + LRK53_RS03025 0.48 -0.7
703,400 + LRK53_RS03025 0.48 -1.8
703,401 - LRK53_RS03025 0.48 -0.0
703,401 - LRK53_RS03025 0.48 -0.6
703,682 + LRK53_RS03025 0.84 -2.8
703,682 + LRK53_RS03025 0.84 -0.7
703,682 + LRK53_RS03025 0.84 -1.4
703,682 + LRK53_RS03025 0.84 -1.2
703,682 + LRK53_RS03025 0.84 -1.7
703,682 + LRK53_RS03025 0.84 -1.0
703,682 + LRK53_RS03025 0.84 -0.6
703,682 + LRK53_RS03025 0.84 +0.1
703,682 + LRK53_RS03025 0.84 -0.7
703,682 + LRK53_RS03025 0.84 -1.6
703,682 + LRK53_RS03025 0.84 -0.2
703,682 + LRK53_RS03025 0.84 +0.1
703,682 + LRK53_RS03025 0.84 -0.6
703,682 + LRK53_RS03025 0.84 -0.9
703,682 + LRK53_RS03025 0.84 -2.1
703,682 + LRK53_RS03025 0.84 -0.6
703,682 + LRK53_RS03025 0.84 -1.5
703,682 + LRK53_RS03025 0.84 +1.1
703,682 + LRK53_RS03025 0.84 -1.3
703,682 + LRK53_RS03025 0.84 -2.3
703,682 + LRK53_RS03025 0.84 -2.2
703,682 + LRK53_RS03025 0.84 +0.1
703,682 + LRK53_RS03025 0.84 -0.6
703,682 + LRK53_RS03025 0.84 -3.6
703,682 + LRK53_RS03025 0.84 +0.1
703,682 + LRK53_RS03025 0.84 +0.3
703,682 + LRK53_RS03025 0.84 -0.8
703,682 + LRK53_RS03025 0.84 -0.9
703,682 + LRK53_RS03025 0.84 -0.3
703,682 + LRK53_RS03025 0.84 -0.3
703,682 + LRK53_RS03025 0.84 -0.4
703,682 + LRK53_RS03025 0.84 -0.8
703,682 + LRK53_RS03025 0.84 -0.6
703,682 + LRK53_RS03025 0.84 +0.7
703,682 + LRK53_RS03025 0.84 +0.3
703,682 + LRK53_RS03025 0.84 -1.0
703,682 + LRK53_RS03025 0.84 -1.8
703,682 + LRK53_RS03025 0.84 +0.1
703,682 + LRK53_RS03025 0.84 -0.4
703,682 + LRK53_RS03025 0.84 -1.4
703,682 + LRK53_RS03025 0.84 -0.9
703,682 + LRK53_RS03025 0.84 -2.6
703,682 + LRK53_RS03025 0.84 -0.4
703,682 + LRK53_RS03025 0.84 -0.5
703,683 - LRK53_RS03025 0.84 -1.5
703,683 - LRK53_RS03025 0.84 -0.4
703,683 - LRK53_RS03025 0.84 -0.0
703,683 - LRK53_RS03025 0.84 -0.6
703,683 - LRK53_RS03025 0.84 -0.3
703,683 - LRK53_RS03025 0.84 -1.0
703,683 - LRK53_RS03025 0.84 -0.5
703,683 - LRK53_RS03025 0.84 -2.6
703,683 - LRK53_RS03025 0.84 -1.0
703,683 - LRK53_RS03025 0.84 -1.7
703,683 - LRK53_RS03025 0.84 -0.5
703,683 - LRK53_RS03025 0.84 -1.0
703,683 - LRK53_RS03025 0.84 -1.7
703,683 - LRK53_RS03025 0.84 -0.0
703,683 - LRK53_RS03025 0.84 +0.0
703,683 - LRK53_RS03025 0.84 -0.9
703,683 - LRK53_RS03025 0.84 -3.2
703,683 - LRK53_RS03025 0.84 -1.4
703,683 - LRK53_RS03025 0.84 -1.0
703,683 - LRK53_RS03025 0.84 -0.5
703,683 - LRK53_RS03025 0.84 -3.5
703,683 - LRK53_RS03025 0.84 -0.9
703,683 - LRK53_RS03025 0.84 +1.0
703,683 - LRK53_RS03025 0.84 -0.7
703,683 - LRK53_RS03025 0.84 -0.3
703,683 - LRK53_RS03025 0.84 -0.0
703,683 - LRK53_RS03025 0.84 +0.7
703,683 - LRK53_RS03025 0.84 -0.3
703,683 - LRK53_RS03025 0.84 +0.6
703,683 - LRK53_RS03025 0.84 -1.5
703,683 - LRK53_RS03025 0.84 -1.5
703,683 - LRK53_RS03025 0.84 -1.2
703,683 - LRK53_RS03025 0.84 -1.1
703,683 - LRK53_RS03025 0.84 -0.8
703,683 - LRK53_RS03025 0.84 -1.5
703,683 - LRK53_RS03025 0.84 -0.3
703,683 - LRK53_RS03025 0.84 +0.3
703,683 - LRK53_RS03025 0.84 +1.0
703,683 - LRK53_RS03025 0.84 -1.3
703,683 - LRK53_RS03025 0.84 +1.4
703,796 + -0.7
703,796 + -0.4
703,796 + -1.0
703,797 - +0.1
703,797 - -0.8
703,797 - +1.0
703,797 - -0.1
703,797 - -1.7
703,819 + +0.1
704,101 + LRK53_RS03030 0.32 -1.4
704,101 + LRK53_RS03030 0.32 +1.3
704,101 + LRK53_RS03030 0.32 -0.2
704,101 + LRK53_RS03030 0.32 -1.5
704,102 - LRK53_RS03030 0.32 -1.0
704,102 - LRK53_RS03030 0.32 -1.9
704,102 - LRK53_RS03030 0.32 -2.6
704,102 - LRK53_RS03030 0.32 -1.0
704,102 - LRK53_RS03030 0.32 -0.8
704,102 - LRK53_RS03030 0.32 +0.3
704,102 - LRK53_RS03030 0.32 -0.0
704,102 - LRK53_RS03030 0.32 -1.1
704,128 + LRK53_RS03030 0.35 -0.6
704,128 + LRK53_RS03030 0.35 -1.3
704,128 + LRK53_RS03030 0.35 -1.2
704,128 + LRK53_RS03030 0.35 -1.4
704,128 + LRK53_RS03030 0.35 -0.8
704,128 + LRK53_RS03030 0.35 -2.4
704,128 + LRK53_RS03030 0.35 -1.7
704,128 + LRK53_RS03030 0.35 -0.7
704,129 - LRK53_RS03030 0.35 +0.3
704,129 - LRK53_RS03030 0.35 -0.7
704,129 - LRK53_RS03030 0.35 -1.0
704,129 - LRK53_RS03030 0.35 +0.5
704,129 - LRK53_RS03030 0.35 -1.6
704,129 - LRK53_RS03030 0.35 -0.2
704,129 - LRK53_RS03030 0.35 -0.4
704,129 - LRK53_RS03030 0.35 -0.6
704,197 + LRK53_RS03030 0.42 -0.4
704,197 + LRK53_RS03030 0.42 -0.0
704,198 - LRK53_RS03030 0.42 +0.1
704,198 - LRK53_RS03030 0.42 -0.7
704,198 - LRK53_RS03030 0.42 -1.4
704,198 - LRK53_RS03030 0.42 -1.7
704,198 - LRK53_RS03030 0.42 +1.2
704,221 + LRK53_RS03030 0.45 +0.8
704,222 - LRK53_RS03030 0.45 -0.6
704,222 - LRK53_RS03030 0.45 -1.8
704,317 + LRK53_RS03030 0.55 -0.9
704,558 + LRK53_RS03030 0.81 -1.0
704,558 + LRK53_RS03030 0.81 -2.5
704,558 + LRK53_RS03030 0.81 -0.6
704,558 + LRK53_RS03030 0.81 -2.4
704,558 + LRK53_RS03030 0.81 -1.7
704,558 + LRK53_RS03030 0.81 +0.2
704,559 - LRK53_RS03030 0.81 -1.6
704,559 - LRK53_RS03030 0.81 +0.1
704,713 + -1.5
704,713 + -0.0
704,713 + -1.2
704,713 + -0.2
704,714 - -0.9
704,768 + -0.3
704,768 + -1.0
704,769 - -0.5
704,769 - -0.6
704,769 - -0.0
704,770 + +1.5
704,770 + +0.7
704,770 + -0.4
704,770 + -1.0
704,770 + +0.4
704,770 + -0.4
704,770 + +0.3
704,770 + -1.4
704,770 + +1.1
704,770 + -2.5
704,770 + -0.0
704,770 + -2.7
704,770 + -0.7
704,770 + -1.5
704,771 - -0.5
704,771 - -1.0
704,771 - +0.1
704,771 - -1.0
704,771 - -0.6
704,771 - -1.4
704,771 - -2.4
704,771 - -0.0
704,771 - -0.0
704,771 - -2.4

Or see this region's nucleotide sequence