Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02460 and LRK53_RS02465 are separated by 128 nucleotides LRK53_RS02465 and LRK53_RS02470 are separated by 76 nucleotides LRK53_RS02470 and LRK53_RS02475 are separated by 3 nucleotides
LRK53_RS02460: LRK53_RS02460 - GH1 family beta-glucosidase, at 565,568 to 566,923
_RS02460
LRK53_RS02465: LRK53_RS02465 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 567,052 to 568,143
_RS02465
LRK53_RS02470: LRK53_RS02470 - ParA family protein, at 568,220 to 569,092
_RS02470
LRK53_RS02475: LRK53_RS02475 - ParB/RepB/Spo0J family partition protein, at 569,096 to 569,965
_RS02475
Position (kb) 567
568
569 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 566.146 kb on - strand, within LRK53_RS02460 at 566.146 kb on - strand, within LRK53_RS02460 at 566.187 kb on + strand, within LRK53_RS02460 at 566.187 kb on + strand, within LRK53_RS02460 at 566.187 kb on + strand, within LRK53_RS02460 at 566.187 kb on + strand, within LRK53_RS02460 at 566.187 kb on + strand, within LRK53_RS02460 at 566.187 kb on + strand, within LRK53_RS02460 at 566.187 kb on + strand, within LRK53_RS02460 at 566.187 kb on + strand, within LRK53_RS02460 at 566.188 kb on - strand, within LRK53_RS02460 at 566.188 kb on - strand, within LRK53_RS02460 at 566.188 kb on - strand, within LRK53_RS02460 at 566.188 kb on - strand, within LRK53_RS02460 at 566.188 kb on - strand, within LRK53_RS02460 at 566.188 kb on - strand, within LRK53_RS02460 at 566.188 kb on - strand, within LRK53_RS02460 at 566.188 kb on - strand, within LRK53_RS02460 at 566.188 kb on - strand, within LRK53_RS02460 at 566.188 kb on - strand, within LRK53_RS02460 at 566.188 kb on - strand, within LRK53_RS02460 at 566.188 kb on - strand, within LRK53_RS02460 at 566.188 kb on - strand, within LRK53_RS02460 at 566.188 kb on - strand, within LRK53_RS02460 at 566.241 kb on + strand, within LRK53_RS02460 at 566.242 kb on - strand, within LRK53_RS02460 at 566.261 kb on + strand, within LRK53_RS02460 at 566.261 kb on + strand, within LRK53_RS02460 at 566.261 kb on + strand, within LRK53_RS02460 at 566.262 kb on - strand, within LRK53_RS02460 at 566.262 kb on - strand, within LRK53_RS02460 at 566.262 kb on - strand, within LRK53_RS02460 at 566.262 kb on - strand, within LRK53_RS02460 at 566.262 kb on - strand, within LRK53_RS02460 at 566.262 kb on - strand, within LRK53_RS02460 at 566.295 kb on + strand, within LRK53_RS02460 at 566.295 kb on + strand, within LRK53_RS02460 at 566.296 kb on - strand, within LRK53_RS02460 at 566.355 kb on + strand, within LRK53_RS02460 at 566.355 kb on + strand, within LRK53_RS02460 at 566.355 kb on + strand, within LRK53_RS02460 at 566.355 kb on + strand, within LRK53_RS02460 at 566.355 kb on + strand, within LRK53_RS02460 at 566.355 kb on + strand, within LRK53_RS02460 at 566.355 kb on + strand, within LRK53_RS02460 at 566.356 kb on - strand, within LRK53_RS02460 at 566.356 kb on - strand, within LRK53_RS02460 at 566.356 kb on - strand, within LRK53_RS02460 at 566.356 kb on - strand, within LRK53_RS02460 at 566.356 kb on - strand, within LRK53_RS02460 at 566.356 kb on - strand, within LRK53_RS02460 at 566.356 kb on - strand, within LRK53_RS02460 at 566.356 kb on - strand, within LRK53_RS02460 at 566.395 kb on - strand, within LRK53_RS02460 at 566.395 kb on - strand, within LRK53_RS02460 at 566.481 kb on + strand, within LRK53_RS02460 at 566.616 kb on + strand, within LRK53_RS02460 at 566.616 kb on + strand, within LRK53_RS02460 at 566.616 kb on + strand, within LRK53_RS02460 at 566.617 kb on - strand, within LRK53_RS02460 at 566.736 kb on + strand, within LRK53_RS02460 at 566.951 kb on + strand at 566.952 kb on - strand at 566.952 kb on - strand at 566.959 kb on + strand at 566.972 kb on + strand at 566.972 kb on + strand at 566.973 kb on - strand at 566.973 kb on - strand at 566.973 kb on - strand at 566.973 kb on - strand at 566.973 kb on - strand at 566.973 kb on - strand at 566.973 kb on - strand at 567.062 kb on + strand at 567.062 kb on + strand at 567.062 kb on + strand at 567.062 kb on + strand at 567.062 kb on + strand at 567.062 kb on + strand at 567.062 kb on + strand at 567.062 kb on + strand at 567.062 kb on + strand at 567.062 kb on + strand at 567.063 kb on - strand at 567.063 kb on - strand at 567.063 kb on - strand at 567.063 kb on - strand at 567.063 kb on - strand at 567.063 kb on - strand at 567.063 kb on - strand at 567.063 kb on - strand at 567.063 kb on - strand at 567.063 kb on - strand at 567.063 kb on - strand at 567.063 kb on - strand at 567.088 kb on + strand at 567.089 kb on - strand at 567.304 kb on + strand, within LRK53_RS02465 at 567.304 kb on + strand, within LRK53_RS02465 at 567.304 kb on + strand, within LRK53_RS02465 at 567.305 kb on - strand, within LRK53_RS02465 at 567.305 kb on - strand, within LRK53_RS02465 at 567.305 kb on - strand, within LRK53_RS02465 at 567.305 kb on - strand, within LRK53_RS02465 at 567.313 kb on + strand, within LRK53_RS02465 at 567.314 kb on - strand, within LRK53_RS02465 at 567.314 kb on - strand, within LRK53_RS02465 at 567.619 kb on + strand, within LRK53_RS02465 at 567.619 kb on + strand, within LRK53_RS02465 at 567.619 kb on + strand, within LRK53_RS02465 at 567.619 kb on + strand, within LRK53_RS02465 at 567.619 kb on + strand, within LRK53_RS02465 at 567.620 kb on - strand, within LRK53_RS02465 at 567.620 kb on - strand, within LRK53_RS02465 at 567.620 kb on - strand, within LRK53_RS02465 at 567.620 kb on - strand, within LRK53_RS02465 at 567.620 kb on - strand, within LRK53_RS02465 at 567.620 kb on - strand, within LRK53_RS02465 at 567.620 kb on - strand, within LRK53_RS02465 at 567.718 kb on + strand, within LRK53_RS02465 at 567.718 kb on + strand, within LRK53_RS02465 at 567.718 kb on + strand, within LRK53_RS02465 at 567.718 kb on + strand, within LRK53_RS02465 at 567.718 kb on + strand, within LRK53_RS02465 at 567.718 kb on + strand, within LRK53_RS02465 at 567.719 kb on - strand, within LRK53_RS02465 at 567.719 kb on - strand, within LRK53_RS02465 at 567.719 kb on - strand, within LRK53_RS02465 at 568.182 kb on + strand at 568.182 kb on + strand at 568.182 kb on + strand at 568.182 kb on + strand at 568.182 kb on + strand at 568.182 kb on + strand at 568.207 kb on + strand at 568.207 kb on + strand at 568.207 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 566,146 - LRK53_RS02460 0.43 -1.2 566,146 - LRK53_RS02460 0.43 +0.7 566,187 + LRK53_RS02460 0.46 -0.8 566,187 + LRK53_RS02460 0.46 -0.7 566,187 + LRK53_RS02460 0.46 -0.8 566,187 + LRK53_RS02460 0.46 +0.2 566,187 + LRK53_RS02460 0.46 -0.6 566,187 + LRK53_RS02460 0.46 -0.6 566,187 + LRK53_RS02460 0.46 +0.3 566,187 + LRK53_RS02460 0.46 -0.7 566,188 - LRK53_RS02460 0.46 -0.3 566,188 - LRK53_RS02460 0.46 +0.3 566,188 - LRK53_RS02460 0.46 -0.8 566,188 - LRK53_RS02460 0.46 -0.9 566,188 - LRK53_RS02460 0.46 -0.3 566,188 - LRK53_RS02460 0.46 +0.7 566,188 - LRK53_RS02460 0.46 +2.2 566,188 - LRK53_RS02460 0.46 -2.5 566,188 - LRK53_RS02460 0.46 -0.1 566,188 - LRK53_RS02460 0.46 -0.3 566,188 - LRK53_RS02460 0.46 -0.7 566,188 - LRK53_RS02460 0.46 -0.1 566,188 - LRK53_RS02460 0.46 +2.2 566,188 - LRK53_RS02460 0.46 -1.7 566,241 + LRK53_RS02460 0.50 -0.1 566,242 - LRK53_RS02460 0.50 -1.1 566,261 + LRK53_RS02460 0.51 +1.0 566,261 + LRK53_RS02460 0.51 -0.1 566,261 + LRK53_RS02460 0.51 -1.0 566,262 - LRK53_RS02460 0.51 -0.1 566,262 - LRK53_RS02460 0.51 -1.8 566,262 - LRK53_RS02460 0.51 -0.9 566,262 - LRK53_RS02460 0.51 -1.9 566,262 - LRK53_RS02460 0.51 -0.3 566,262 - LRK53_RS02460 0.51 -1.8 566,295 + LRK53_RS02460 0.54 +0.1 566,295 + LRK53_RS02460 0.54 -1.5 566,296 - LRK53_RS02460 0.54 -0.3 566,355 + LRK53_RS02460 0.58 -1.3 566,355 + LRK53_RS02460 0.58 -1.5 566,355 + LRK53_RS02460 0.58 +0.1 566,355 + LRK53_RS02460 0.58 -1.8 566,355 + LRK53_RS02460 0.58 -0.8 566,355 + LRK53_RS02460 0.58 -0.7 566,355 + LRK53_RS02460 0.58 +0.4 566,356 - LRK53_RS02460 0.58 +1.1 566,356 - LRK53_RS02460 0.58 +0.1 566,356 - LRK53_RS02460 0.58 -0.3 566,356 - LRK53_RS02460 0.58 -1.1 566,356 - LRK53_RS02460 0.58 -0.5 566,356 - LRK53_RS02460 0.58 +0.2 566,356 - LRK53_RS02460 0.58 -1.2 566,356 - LRK53_RS02460 0.58 -0.3 566,395 - LRK53_RS02460 0.61 +1.7 566,395 - LRK53_RS02460 0.61 -1.5 566,481 + LRK53_RS02460 0.67 +1.8 566,616 + LRK53_RS02460 0.77 -0.1 566,616 + LRK53_RS02460 0.77 -0.3 566,616 + LRK53_RS02460 0.77 +0.3 566,617 - LRK53_RS02460 0.77 -1.6 566,736 + LRK53_RS02460 0.86 -0.2 566,951 + -1.8 566,952 - -0.9 566,952 - -0.1 566,959 + -0.5 566,972 + -0.1 566,972 + -0.2 566,973 - +0.1 566,973 - -0.1 566,973 - +2.0 566,973 - +0.9 566,973 - -2.5 566,973 - -0.2 566,973 - +0.9 567,062 + +0.7 567,062 + -1.8 567,062 + -1.7 567,062 + -0.5 567,062 + +1.8 567,062 + +1.9 567,062 + -1.5 567,062 + -3.6 567,062 + -2.1 567,062 + -1.8 567,063 - -1.2 567,063 - +0.9 567,063 - -0.3 567,063 - +0.4 567,063 - -2.3 567,063 - +0.4 567,063 - +1.1 567,063 - -0.8 567,063 - -1.4 567,063 - -0.5 567,063 - +0.9 567,063 - -0.1 567,088 + +0.2 567,089 - -0.7 567,304 + LRK53_RS02465 0.23 +1.9 567,304 + LRK53_RS02465 0.23 -1.8 567,304 + LRK53_RS02465 0.23 -0.6 567,305 - LRK53_RS02465 0.23 +0.1 567,305 - LRK53_RS02465 0.23 -1.8 567,305 - LRK53_RS02465 0.23 -0.2 567,305 - LRK53_RS02465 0.23 -0.9 567,313 + LRK53_RS02465 0.24 -0.9 567,314 - LRK53_RS02465 0.24 -0.2 567,314 - LRK53_RS02465 0.24 -0.3 567,619 + LRK53_RS02465 0.52 +0.7 567,619 + LRK53_RS02465 0.52 -3.1 567,619 + LRK53_RS02465 0.52 -1.0 567,619 + LRK53_RS02465 0.52 +0.7 567,619 + LRK53_RS02465 0.52 -1.1 567,620 - LRK53_RS02465 0.52 -0.6 567,620 - LRK53_RS02465 0.52 -0.3 567,620 - LRK53_RS02465 0.52 +0.1 567,620 - LRK53_RS02465 0.52 -0.5 567,620 - LRK53_RS02465 0.52 -0.4 567,620 - LRK53_RS02465 0.52 -1.6 567,620 - LRK53_RS02465 0.52 -1.1 567,718 + LRK53_RS02465 0.61 -1.2 567,718 + LRK53_RS02465 0.61 -1.2 567,718 + LRK53_RS02465 0.61 -1.1 567,718 + LRK53_RS02465 0.61 -2.2 567,718 + LRK53_RS02465 0.61 +0.1 567,718 + LRK53_RS02465 0.61 -0.7 567,719 - LRK53_RS02465 0.61 -1.6 567,719 - LRK53_RS02465 0.61 +1.4 567,719 - LRK53_RS02465 0.61 +0.8 568,182 + -0.0 568,182 + -1.1 568,182 + -0.1 568,182 + +1.6 568,182 + -0.7 568,182 + -0.2 568,207 + +1.4 568,207 + -0.7 568,207 + -0.2
Or see this region's nucleotide sequence