Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02445 and LRK53_RS02450 are separated by 407 nucleotides LRK53_RS02450 and LRK53_RS02455 are separated by 152 nucleotides LRK53_RS02455 and LRK53_RS02460 are separated by 162 nucleotides
LRK53_RS02445: LRK53_RS02445 - LacI family transcriptional regulator, at 562,735 to 563,763
_RS02445
LRK53_RS02450: LRK53_RS02450 - SPFH domain-containing protein, at 564,171 to 564,620
_RS02450
LRK53_RS02455: LRK53_RS02455 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 564,773 to 565,405
_RS02455
LRK53_RS02460: LRK53_RS02460 - GH1 family beta-glucosidase, at 565,568 to 566,923
_RS02460
Position (kb) 564
565 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 563.267 kb on + strand, within LRK53_RS02445 at 563.279 kb on + strand, within LRK53_RS02445 at 563.279 kb on + strand, within LRK53_RS02445 at 563.279 kb on + strand, within LRK53_RS02445 at 563.280 kb on - strand, within LRK53_RS02445 at 563.280 kb on - strand, within LRK53_RS02445 at 563.303 kb on + strand, within LRK53_RS02445 at 563.304 kb on - strand, within LRK53_RS02445 at 563.624 kb on + strand, within LRK53_RS02445 at 563.624 kb on + strand, within LRK53_RS02445 at 563.624 kb on + strand, within LRK53_RS02445 at 563.624 kb on + strand, within LRK53_RS02445 at 563.624 kb on + strand, within LRK53_RS02445 at 563.624 kb on + strand, within LRK53_RS02445 at 563.624 kb on + strand, within LRK53_RS02445 at 563.624 kb on + strand, within LRK53_RS02445 at 563.624 kb on + strand, within LRK53_RS02445 at 563.625 kb on - strand, within LRK53_RS02445 at 563.625 kb on - strand, within LRK53_RS02445 at 563.625 kb on - strand, within LRK53_RS02445 at 563.625 kb on - strand, within LRK53_RS02445 at 563.737 kb on + strand at 563.737 kb on + strand at 563.737 kb on + strand at 563.836 kb on - strand at 563.836 kb on - strand at 563.836 kb on - strand at 563.836 kb on - strand at 563.846 kb on + strand at 563.846 kb on + strand at 563.846 kb on + strand at 563.846 kb on + strand at 563.846 kb on + strand at 563.846 kb on + strand at 563.847 kb on - strand at 563.847 kb on - strand at 563.847 kb on - strand at 563.847 kb on - strand at 563.847 kb on - strand at 563.847 kb on - strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.057 kb on - strand at 564.057 kb on - strand at 564.076 kb on + strand at 564.088 kb on - strand at 564.113 kb on - strand at 564.154 kb on + strand at 564.154 kb on + strand at 564.154 kb on + strand at 564.155 kb on - strand at 564.155 kb on - strand at 564.181 kb on + strand at 564.181 kb on + strand at 564.255 kb on + strand, within LRK53_RS02450 at 564.255 kb on + strand, within LRK53_RS02450 at 564.256 kb on - strand, within LRK53_RS02450 at 564.256 kb on - strand, within LRK53_RS02450 at 564.256 kb on - strand, within LRK53_RS02450 at 564.256 kb on - strand, within LRK53_RS02450 at 564.256 kb on - strand, within LRK53_RS02450 at 564.256 kb on - strand, within LRK53_RS02450 at 564.256 kb on - strand, within LRK53_RS02450 at 564.264 kb on + strand, within LRK53_RS02450 at 564.265 kb on - strand, within LRK53_RS02450 at 564.303 kb on - strand, within LRK53_RS02450 at 564.417 kb on + strand, within LRK53_RS02450 at 564.417 kb on + strand, within LRK53_RS02450 at 564.417 kb on + strand, within LRK53_RS02450 at 564.417 kb on + strand, within LRK53_RS02450 at 564.417 kb on + strand, within LRK53_RS02450 at 564.417 kb on + strand, within LRK53_RS02450 at 564.418 kb on - strand, within LRK53_RS02450 at 564.418 kb on - strand, within LRK53_RS02450 at 564.418 kb on - strand, within LRK53_RS02450 at 564.418 kb on - strand, within LRK53_RS02450 at 564.418 kb on - strand, within LRK53_RS02450 at 564.739 kb on + strand at 564.739 kb on + strand at 564.739 kb on + strand at 564.739 kb on + strand at 564.740 kb on - strand at 564.740 kb on - strand at 564.740 kb on - strand at 564.903 kb on - strand, within LRK53_RS02455 at 564.903 kb on - strand, within LRK53_RS02455 at 564.977 kb on + strand, within LRK53_RS02455 at 564.978 kb on - strand, within LRK53_RS02455 at 564.978 kb on - strand, within LRK53_RS02455 at 565.473 kb on + strand at 565.473 kb on + strand at 565.473 kb on + strand at 565.473 kb on + strand at 565.474 kb on - strand at 565.474 kb on - strand at 565.474 kb on - strand at 565.474 kb on - strand at 565.611 kb on + strand at 565.611 kb on + strand at 565.611 kb on + strand at 565.611 kb on + strand at 565.611 kb on + strand at 565.611 kb on + strand at 565.611 kb on + strand at 565.611 kb on + strand at 565.612 kb on - strand at 565.612 kb on - strand at 565.612 kb on - strand at 565.612 kb on - strand at 565.612 kb on - strand at 565.612 kb on - strand at 565.612 kb on - strand at 565.612 kb on - strand at 565.612 kb on - strand at 565.612 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 563,267 + LRK53_RS02445 0.52 +0.2 563,279 + LRK53_RS02445 0.53 -0.2 563,279 + LRK53_RS02445 0.53 +0.2 563,279 + LRK53_RS02445 0.53 -0.3 563,280 - LRK53_RS02445 0.53 -0.0 563,280 - LRK53_RS02445 0.53 -0.1 563,303 + LRK53_RS02445 0.55 -0.1 563,304 - LRK53_RS02445 0.55 +1.9 563,624 + LRK53_RS02445 0.86 -1.6 563,624 + LRK53_RS02445 0.86 -1.7 563,624 + LRK53_RS02445 0.86 -0.9 563,624 + LRK53_RS02445 0.86 -0.1 563,624 + LRK53_RS02445 0.86 +1.4 563,624 + LRK53_RS02445 0.86 -1.2 563,624 + LRK53_RS02445 0.86 +0.1 563,624 + LRK53_RS02445 0.86 +0.1 563,624 + LRK53_RS02445 0.86 +1.0 563,625 - LRK53_RS02445 0.86 -0.4 563,625 - LRK53_RS02445 0.86 -3.8 563,625 - LRK53_RS02445 0.86 +1.0 563,625 - LRK53_RS02445 0.86 +1.9 563,737 + -0.1 563,737 + -1.1 563,737 + +0.2 563,836 - +0.1 563,836 - -0.8 563,836 - +0.1 563,836 - +2.2 563,846 + -0.9 563,846 + +0.7 563,846 + -1.1 563,846 + -0.3 563,846 + -0.9 563,846 + +0.2 563,847 - -0.2 563,847 - -1.6 563,847 - +2.2 563,847 - -0.6 563,847 - +0.7 563,847 - +0.9 564,056 + -1.3 564,056 + -0.6 564,057 - -0.6 564,057 - +0.4 564,076 + -1.7 564,088 - -0.5 564,113 - -0.1 564,154 + -0.7 564,154 + -0.9 564,154 + -1.3 564,155 - -0.8 564,155 - -0.6 564,181 + +2.1 564,181 + +0.7 564,255 + LRK53_RS02450 0.19 +0.1 564,255 + LRK53_RS02450 0.19 -0.8 564,256 - LRK53_RS02450 0.19 -0.6 564,256 - LRK53_RS02450 0.19 -0.8 564,256 - LRK53_RS02450 0.19 +0.9 564,256 - LRK53_RS02450 0.19 -1.5 564,256 - LRK53_RS02450 0.19 -0.1 564,256 - LRK53_RS02450 0.19 +0.4 564,256 - LRK53_RS02450 0.19 +0.1 564,264 + LRK53_RS02450 0.21 +2.7 564,265 - LRK53_RS02450 0.21 +0.4 564,303 - LRK53_RS02450 0.29 -0.5 564,417 + LRK53_RS02450 0.55 +1.0 564,417 + LRK53_RS02450 0.55 +0.5 564,417 + LRK53_RS02450 0.55 +0.5 564,417 + LRK53_RS02450 0.55 -2.1 564,417 + LRK53_RS02450 0.55 -0.2 564,417 + LRK53_RS02450 0.55 +2.2 564,418 - LRK53_RS02450 0.55 +0.1 564,418 - LRK53_RS02450 0.55 -0.8 564,418 - LRK53_RS02450 0.55 -0.2 564,418 - LRK53_RS02450 0.55 -1.2 564,418 - LRK53_RS02450 0.55 -1.9 564,739 + -1.5 564,739 + -2.3 564,739 + -0.1 564,739 + -0.9 564,740 - +0.2 564,740 - -1.0 564,740 - -0.1 564,903 - LRK53_RS02455 0.21 -1.7 564,903 - LRK53_RS02455 0.21 +0.2 564,977 + LRK53_RS02455 0.32 -0.5 564,978 - LRK53_RS02455 0.32 -1.3 564,978 - LRK53_RS02455 0.32 -0.5 565,473 + -2.0 565,473 + +1.4 565,473 + -1.3 565,473 + -1.7 565,474 - +0.1 565,474 - -0.7 565,474 - -0.8 565,474 - -0.4 565,611 + -0.0 565,611 + -1.1 565,611 + -0.5 565,611 + -2.7 565,611 + +0.6 565,611 + +0.4 565,611 + -0.1 565,611 + -0.1 565,612 - -1.8 565,612 - -0.3 565,612 - -1.3 565,612 - -3.0 565,612 - +0.1 565,612 - +0.1 565,612 - -0.8 565,612 - -0.3 565,612 - -1.0 565,612 - -2.7
Or see this region's nucleotide sequence