Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02420

Experiment: planktonic; Day4; SGW;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02415 and LRK53_RS02420 are separated by 44 nucleotidesLRK53_RS02420 and LRK53_RS02425 overlap by 4 nucleotides LRK53_RS02415: LRK53_RS02415 - carbohydrate ABC transporter permease, at 553,520 to 554,293 _RS02415 LRK53_RS02420: LRK53_RS02420 - sugar ABC transporter permease, at 554,338 to 555,216 _RS02420 LRK53_RS02425: LRK53_RS02425 - sugar ABC transporter substrate-binding protein, at 555,213 to 556,514 _RS02425 Position (kb) 554 555 556Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.383 kb on + strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.384 kb on - strandat 553.385 kb on - strandat 553.557 kb on + strandat 553.558 kb on - strandat 553.558 kb on - strandat 553.683 kb on + strand, within LRK53_RS02415at 553.683 kb on + strand, within LRK53_RS02415at 553.683 kb on + strand, within LRK53_RS02415at 553.684 kb on - strand, within LRK53_RS02415at 553.684 kb on - strand, within LRK53_RS02415at 553.684 kb on - strand, within LRK53_RS02415at 553.684 kb on - strand, within LRK53_RS02415at 553.684 kb on - strand, within LRK53_RS02415at 553.684 kb on - strand, within LRK53_RS02415at 553.684 kb on - strand, within LRK53_RS02415at 553.872 kb on + strand, within LRK53_RS02415at 553.873 kb on - strand, within LRK53_RS02415at 553.873 kb on - strand, within LRK53_RS02415at 553.873 kb on - strand, within LRK53_RS02415at 553.932 kb on + strand, within LRK53_RS02415at 553.933 kb on - strand, within LRK53_RS02415at 553.933 kb on - strand, within LRK53_RS02415at 553.933 kb on - strand, within LRK53_RS02415at 553.933 kb on - strand, within LRK53_RS02415at 553.933 kb on - strand, within LRK53_RS02415at 553.933 kb on - strand, within LRK53_RS02415at 553.933 kb on - strand, within LRK53_RS02415at 553.933 kb on - strand, within LRK53_RS02415at 553.933 kb on - strand, within LRK53_RS02415at 553.953 kb on + strand, within LRK53_RS02415at 553.953 kb on + strand, within LRK53_RS02415at 553.953 kb on + strand, within LRK53_RS02415at 553.953 kb on + strand, within LRK53_RS02415at 553.953 kb on + strand, within LRK53_RS02415at 553.954 kb on - strand, within LRK53_RS02415at 553.954 kb on - strand, within LRK53_RS02415at 553.954 kb on - strand, within LRK53_RS02415at 553.954 kb on - strand, within LRK53_RS02415at 553.954 kb on - strand, within LRK53_RS02415at 553.954 kb on - strand, within LRK53_RS02415at 553.954 kb on - strand, within LRK53_RS02415at 554.067 kb on + strand, within LRK53_RS02415at 554.131 kb on + strand, within LRK53_RS02415at 554.132 kb on - strand, within LRK53_RS02415at 554.139 kb on + strand, within LRK53_RS02415at 554.176 kb on - strand, within LRK53_RS02415at 554.462 kb on + strand, within LRK53_RS02420at 554.462 kb on + strand, within LRK53_RS02420at 554.462 kb on + strand, within LRK53_RS02420at 554.462 kb on + strand, within LRK53_RS02420at 554.462 kb on + strand, within LRK53_RS02420at 554.462 kb on + strand, within LRK53_RS02420at 554.462 kb on + strand, within LRK53_RS02420at 554.463 kb on - strand, within LRK53_RS02420at 554.463 kb on - strand, within LRK53_RS02420at 554.463 kb on - strand, within LRK53_RS02420at 554.463 kb on - strand, within LRK53_RS02420at 554.463 kb on - strand, within LRK53_RS02420at 554.471 kb on + strand, within LRK53_RS02420at 554.471 kb on + strand, within LRK53_RS02420at 554.471 kb on + strand, within LRK53_RS02420at 554.471 kb on + strand, within LRK53_RS02420at 554.471 kb on + strand, within LRK53_RS02420at 554.472 kb on - strand, within LRK53_RS02420at 554.472 kb on - strand, within LRK53_RS02420at 554.472 kb on - strand, within LRK53_RS02420at 554.472 kb on - strand, within LRK53_RS02420at 554.472 kb on - strand, within LRK53_RS02420at 554.472 kb on - strand, within LRK53_RS02420at 554.472 kb on - strand, within LRK53_RS02420at 554.519 kb on + strand, within LRK53_RS02420at 554.520 kb on - strand, within LRK53_RS02420at 554.520 kb on - strand, within LRK53_RS02420at 554.543 kb on + strand, within LRK53_RS02420at 554.544 kb on - strand, within LRK53_RS02420at 554.544 kb on - strand, within LRK53_RS02420at 554.654 kb on + strand, within LRK53_RS02420at 554.654 kb on + strand, within LRK53_RS02420at 554.654 kb on + strand, within LRK53_RS02420at 554.654 kb on + strand, within LRK53_RS02420at 554.654 kb on + strand, within LRK53_RS02420at 554.655 kb on - strand, within LRK53_RS02420at 554.655 kb on - strand, within LRK53_RS02420at 554.655 kb on - strand, within LRK53_RS02420at 554.655 kb on - strand, within LRK53_RS02420at 554.655 kb on - strand, within LRK53_RS02420at 554.655 kb on - strand, within LRK53_RS02420at 554.655 kb on - strand, within LRK53_RS02420at 554.706 kb on - strand, within LRK53_RS02420at 554.807 kb on + strand, within LRK53_RS02420at 554.807 kb on + strand, within LRK53_RS02420at 554.807 kb on + strand, within LRK53_RS02420at 554.807 kb on + strand, within LRK53_RS02420at 554.807 kb on + strand, within LRK53_RS02420at 554.808 kb on - strand, within LRK53_RS02420at 554.808 kb on - strand, within LRK53_RS02420at 554.808 kb on - strand, within LRK53_RS02420at 554.808 kb on - strand, within LRK53_RS02420at 554.808 kb on - strand, within LRK53_RS02420at 554.808 kb on - strand, within LRK53_RS02420at 554.823 kb on - strand, within LRK53_RS02420at 554.840 kb on + strand, within LRK53_RS02420at 554.840 kb on + strand, within LRK53_RS02420at 554.841 kb on - strand, within LRK53_RS02420at 554.870 kb on + strand, within LRK53_RS02420at 554.871 kb on + strand, within LRK53_RS02420at 554.996 kb on + strand, within LRK53_RS02420at 554.996 kb on + strand, within LRK53_RS02420at 554.996 kb on + strand, within LRK53_RS02420at 554.997 kb on - strand, within LRK53_RS02420at 554.997 kb on - strand, within LRK53_RS02420at 554.997 kb on - strand, within LRK53_RS02420at 555.050 kb on + strand, within LRK53_RS02420at 555.050 kb on + strand, within LRK53_RS02420at 555.050 kb on + strand, within LRK53_RS02420at 555.051 kb on - strand, within LRK53_RS02420at 555.051 kb on - strand, within LRK53_RS02420at 555.051 kb on - strand, within LRK53_RS02420at 555.051 kb on - strand, within LRK53_RS02420at 555.099 kb on - strand, within LRK53_RS02420at 555.107 kb on + strand, within LRK53_RS02420at 555.500 kb on - strand, within LRK53_RS02425at 555.532 kb on + strand, within LRK53_RS02425at 555.532 kb on + strand, within LRK53_RS02425at 555.532 kb on + strand, within LRK53_RS02425at 555.533 kb on - strand, within LRK53_RS02425at 555.533 kb on - strand, within LRK53_RS02425at 555.533 kb on - strand, within LRK53_RS02425at 555.533 kb on - strand, within LRK53_RS02425at 555.715 kb on + strand, within LRK53_RS02425at 555.715 kb on + strand, within LRK53_RS02425at 555.715 kb on + strand, within LRK53_RS02425at 555.716 kb on - strand, within LRK53_RS02425at 555.716 kb on - strand, within LRK53_RS02425at 555.724 kb on + strand, within LRK53_RS02425at 555.725 kb on - strand, within LRK53_RS02425at 555.725 kb on - strand, within LRK53_RS02425at 555.811 kb on + strand, within LRK53_RS02425at 555.811 kb on + strand, within LRK53_RS02425at 555.811 kb on + strand, within LRK53_RS02425at 555.812 kb on - strand, within LRK53_RS02425at 555.812 kb on - strand, within LRK53_RS02425at 555.812 kb on - strand, within LRK53_RS02425at 555.812 kb on - strand, within LRK53_RS02425at 556.051 kb on + strand, within LRK53_RS02425at 556.051 kb on + strand, within LRK53_RS02425at 556.075 kb on + strand, within LRK53_RS02425at 556.075 kb on + strand, within LRK53_RS02425at 556.075 kb on + strand, within LRK53_RS02425at 556.075 kb on + strand, within LRK53_RS02425at 556.075 kb on + strand, within LRK53_RS02425at 556.075 kb on + strand, within LRK53_RS02425at 556.076 kb on - strand, within LRK53_RS02425at 556.076 kb on - strand, within LRK53_RS02425at 556.076 kb on - strand, within LRK53_RS02425at 556.076 kb on - strand, within LRK53_RS02425at 556.076 kb on - strand, within LRK53_RS02425at 556.076 kb on - strand, within LRK53_RS02425at 556.076 kb on - strand, within LRK53_RS02425at 556.076 kb on - strand, within LRK53_RS02425at 556.076 kb on - strand, within LRK53_RS02425at 556.090 kb on + strand, within LRK53_RS02425at 556.090 kb on + strand, within LRK53_RS02425at 556.090 kb on + strand, within LRK53_RS02425at 556.090 kb on + strand, within LRK53_RS02425at 556.090 kb on + strand, within LRK53_RS02425at 556.090 kb on + strand, within LRK53_RS02425at 556.090 kb on + strand, within LRK53_RS02425at 556.091 kb on - strand, within LRK53_RS02425at 556.135 kb on + strand, within LRK53_RS02425at 556.135 kb on + strand, within LRK53_RS02425at 556.135 kb on + strand, within LRK53_RS02425at 556.136 kb on - strand, within LRK53_RS02425at 556.136 kb on - strand, within LRK53_RS02425

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day4; SGW;
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553,383 + -1.1
553,383 + -1.5
553,383 + -0.4
553,383 + -0.1
553,383 + -0.9
553,383 + -0.1
553,383 + -1.5
553,383 + -1.9
553,383 + -1.0
553,383 + +0.6
553,383 + +0.2
553,383 + -0.3
553,383 + -1.3
553,383 + -1.2
553,383 + -1.9
553,383 + -0.1
553,383 + -1.8
553,383 + -0.7
553,383 + +0.7
553,383 + +0.3
553,383 + +1.2
553,383 + -1.9
553,383 + +0.3
553,383 + -2.5
553,383 + -1.1
553,383 + -1.5
553,384 - -3.2
553,384 - -1.0
553,384 - -2.1
553,384 - -0.2
553,384 - -1.1
553,384 - -1.3
553,384 - -1.1
553,384 - +0.2
553,384 - +1.4
553,384 - -1.4
553,384 - +0.0
553,384 - -1.3
553,384 - -0.1
553,384 - -1.5
553,384 - -0.4
553,384 - -1.3
553,384 - -1.0
553,384 - -1.1
553,384 - -0.8
553,384 - +0.4
553,384 - -1.6
553,384 - -2.3
553,384 - -0.5
553,384 - -2.0
553,384 - -2.0
553,384 - -0.6
553,385 - +0.5
553,557 + -1.9
553,558 - -1.0
553,558 - -1.6
553,683 + LRK53_RS02415 0.21 -1.0
553,683 + LRK53_RS02415 0.21 -1.8
553,683 + LRK53_RS02415 0.21 -2.2
553,684 - LRK53_RS02415 0.21 +0.9
553,684 - LRK53_RS02415 0.21 -1.4
553,684 - LRK53_RS02415 0.21 -0.1
553,684 - LRK53_RS02415 0.21 -0.9
553,684 - LRK53_RS02415 0.21 -0.2
553,684 - LRK53_RS02415 0.21 -1.4
553,684 - LRK53_RS02415 0.21 +0.5
553,872 + LRK53_RS02415 0.45 -1.6
553,873 - LRK53_RS02415 0.46 -0.9
553,873 - LRK53_RS02415 0.46 -1.3
553,873 - LRK53_RS02415 0.46 -0.1
553,932 + LRK53_RS02415 0.53 +2.0
553,933 - LRK53_RS02415 0.53 -0.7
553,933 - LRK53_RS02415 0.53 +0.1
553,933 - LRK53_RS02415 0.53 +0.1
553,933 - LRK53_RS02415 0.53 -0.3
553,933 - LRK53_RS02415 0.53 +0.6
553,933 - LRK53_RS02415 0.53 -0.4
553,933 - LRK53_RS02415 0.53 -0.7
553,933 - LRK53_RS02415 0.53 +0.8
553,933 - LRK53_RS02415 0.53 -0.8
553,953 + LRK53_RS02415 0.56 -0.1
553,953 + LRK53_RS02415 0.56 -2.5
553,953 + LRK53_RS02415 0.56 -2.0
553,953 + LRK53_RS02415 0.56 +0.9
553,953 + LRK53_RS02415 0.56 -0.1
553,954 - LRK53_RS02415 0.56 -0.2
553,954 - LRK53_RS02415 0.56 -2.2
553,954 - LRK53_RS02415 0.56 -0.8
553,954 - LRK53_RS02415 0.56 -1.8
553,954 - LRK53_RS02415 0.56 -1.3
553,954 - LRK53_RS02415 0.56 -0.2
553,954 - LRK53_RS02415 0.56 -1.1
554,067 + LRK53_RS02415 0.71 -0.8
554,131 + LRK53_RS02415 0.79 -0.3
554,132 - LRK53_RS02415 0.79 -0.1
554,139 + LRK53_RS02415 0.80 +1.4
554,176 - LRK53_RS02415 0.85 -2.3
554,462 + LRK53_RS02420 0.14 -0.4
554,462 + LRK53_RS02420 0.14 -0.0
554,462 + LRK53_RS02420 0.14 -1.1
554,462 + LRK53_RS02420 0.14 -0.9
554,462 + LRK53_RS02420 0.14 +0.1
554,462 + LRK53_RS02420 0.14 -0.6
554,462 + LRK53_RS02420 0.14 -0.6
554,463 - LRK53_RS02420 0.14 +1.9
554,463 - LRK53_RS02420 0.14 +0.9
554,463 - LRK53_RS02420 0.14 -1.2
554,463 - LRK53_RS02420 0.14 -0.1
554,463 - LRK53_RS02420 0.14 -0.6
554,471 + LRK53_RS02420 0.15 -1.8
554,471 + LRK53_RS02420 0.15 -1.3
554,471 + LRK53_RS02420 0.15 -0.5
554,471 + LRK53_RS02420 0.15 +0.4
554,471 + LRK53_RS02420 0.15 -1.1
554,472 - LRK53_RS02420 0.15 -1.5
554,472 - LRK53_RS02420 0.15 +0.4
554,472 - LRK53_RS02420 0.15 +0.8
554,472 - LRK53_RS02420 0.15 -0.2
554,472 - LRK53_RS02420 0.15 -0.3
554,472 - LRK53_RS02420 0.15 -0.0
554,472 - LRK53_RS02420 0.15 -0.2
554,519 + LRK53_RS02420 0.21 +0.5
554,520 - LRK53_RS02420 0.21 -1.4
554,520 - LRK53_RS02420 0.21 -0.8
554,543 + LRK53_RS02420 0.23 -0.3
554,544 - LRK53_RS02420 0.23 -1.1
554,544 - LRK53_RS02420 0.23 -2.6
554,654 + LRK53_RS02420 0.36 -1.4
554,654 + LRK53_RS02420 0.36 -0.7
554,654 + LRK53_RS02420 0.36 -1.3
554,654 + LRK53_RS02420 0.36 -1.7
554,654 + LRK53_RS02420 0.36 +0.5
554,655 - LRK53_RS02420 0.36 -0.2
554,655 - LRK53_RS02420 0.36 -0.6
554,655 - LRK53_RS02420 0.36 +0.4
554,655 - LRK53_RS02420 0.36 -0.7
554,655 - LRK53_RS02420 0.36 -0.2
554,655 - LRK53_RS02420 0.36 +0.1
554,655 - LRK53_RS02420 0.36 -1.8
554,706 - LRK53_RS02420 0.42 -0.2
554,807 + LRK53_RS02420 0.53 -2.4
554,807 + LRK53_RS02420 0.53 +0.2
554,807 + LRK53_RS02420 0.53 -0.1
554,807 + LRK53_RS02420 0.53 +0.1
554,807 + LRK53_RS02420 0.53 -2.2
554,808 - LRK53_RS02420 0.53 -0.8
554,808 - LRK53_RS02420 0.53 -0.7
554,808 - LRK53_RS02420 0.53 -0.8
554,808 - LRK53_RS02420 0.53 -0.6
554,808 - LRK53_RS02420 0.53 -0.9
554,808 - LRK53_RS02420 0.53 -0.8
554,823 - LRK53_RS02420 0.55 -1.1
554,840 + LRK53_RS02420 0.57 -1.7
554,840 + LRK53_RS02420 0.57 -1.6
554,841 - LRK53_RS02420 0.57 -1.1
554,870 + LRK53_RS02420 0.61 -1.2
554,871 + LRK53_RS02420 0.61 +2.0
554,996 + LRK53_RS02420 0.75 +0.2
554,996 + LRK53_RS02420 0.75 +0.4
554,996 + LRK53_RS02420 0.75 -2.5
554,997 - LRK53_RS02420 0.75 -0.3
554,997 - LRK53_RS02420 0.75 -0.9
554,997 - LRK53_RS02420 0.75 -0.7
555,050 + LRK53_RS02420 0.81 -0.1
555,050 + LRK53_RS02420 0.81 +0.9
555,050 + LRK53_RS02420 0.81 -1.0
555,051 - LRK53_RS02420 0.81 -2.2
555,051 - LRK53_RS02420 0.81 -0.6
555,051 - LRK53_RS02420 0.81 -0.8
555,051 - LRK53_RS02420 0.81 -1.7
555,099 - LRK53_RS02420 0.87 -0.6
555,107 + LRK53_RS02420 0.87 +0.1
555,500 - LRK53_RS02425 0.22 -0.5
555,532 + LRK53_RS02425 0.25 +0.1
555,532 + LRK53_RS02425 0.25 -1.6
555,532 + LRK53_RS02425 0.25 +1.6
555,533 - LRK53_RS02425 0.25 -1.4
555,533 - LRK53_RS02425 0.25 -2.2
555,533 - LRK53_RS02425 0.25 +1.1
555,533 - LRK53_RS02425 0.25 -0.3
555,715 + LRK53_RS02425 0.39 -0.5
555,715 + LRK53_RS02425 0.39 -0.2
555,715 + LRK53_RS02425 0.39 +0.9
555,716 - LRK53_RS02425 0.39 +0.2
555,716 - LRK53_RS02425 0.39 -0.5
555,724 + LRK53_RS02425 0.39 +0.9
555,725 - LRK53_RS02425 0.39 -1.4
555,725 - LRK53_RS02425 0.39 -1.1
555,811 + LRK53_RS02425 0.46 -1.3
555,811 + LRK53_RS02425 0.46 -1.0
555,811 + LRK53_RS02425 0.46 -0.9
555,812 - LRK53_RS02425 0.46 -0.8
555,812 - LRK53_RS02425 0.46 +0.1
555,812 - LRK53_RS02425 0.46 -1.0
555,812 - LRK53_RS02425 0.46 +0.2
556,051 + LRK53_RS02425 0.64 -0.9
556,051 + LRK53_RS02425 0.64 -0.0
556,075 + LRK53_RS02425 0.66 -0.6
556,075 + LRK53_RS02425 0.66 -1.1
556,075 + LRK53_RS02425 0.66 -0.1
556,075 + LRK53_RS02425 0.66 -1.9
556,075 + LRK53_RS02425 0.66 -0.7
556,075 + LRK53_RS02425 0.66 -1.3
556,076 - LRK53_RS02425 0.66 -1.2
556,076 - LRK53_RS02425 0.66 -1.6
556,076 - LRK53_RS02425 0.66 -1.1
556,076 - LRK53_RS02425 0.66 +0.5
556,076 - LRK53_RS02425 0.66 -1.7
556,076 - LRK53_RS02425 0.66 -1.1
556,076 - LRK53_RS02425 0.66 +0.5
556,076 - LRK53_RS02425 0.66 -0.5
556,076 - LRK53_RS02425 0.66 -2.4
556,090 + LRK53_RS02425 0.67 -1.5
556,090 + LRK53_RS02425 0.67 +0.1
556,090 + LRK53_RS02425 0.67 -2.0
556,090 + LRK53_RS02425 0.67 +0.5
556,090 + LRK53_RS02425 0.67 -1.4
556,090 + LRK53_RS02425 0.67 -0.1
556,090 + LRK53_RS02425 0.67 +0.4
556,091 - LRK53_RS02425 0.67 -0.9
556,135 + LRK53_RS02425 0.71 -1.1
556,135 + LRK53_RS02425 0.71 -1.3
556,135 + LRK53_RS02425 0.71 -0.3
556,136 - LRK53_RS02425 0.71 -0.1
556,136 - LRK53_RS02425 0.71 -1.5

Or see this region's nucleotide sequence