Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02345

Experiment: planktonic; Day4; SGW;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02335 and LRK53_RS02340 overlap by 23 nucleotidesLRK53_RS02340 and LRK53_RS02345 overlap by 8 nucleotidesLRK53_RS02345 and LRK53_RS02350 are separated by 28 nucleotides LRK53_RS02335: LRK53_RS02335 - hypothetical protein, at 537,288 to 537,977 _RS02335 LRK53_RS02340: LRK53_RS02340 - isopentenyl-diphosphate Delta-isomerase, at 537,955 to 538,542 _RS02340 LRK53_RS02345: LRK53_RS02345 - hydroxymethylglutaryl-CoA reductase, degradative, at 538,535 to 540,874 _RS02345 LRK53_RS02350: LRK53_RS02350 - hypothetical protein, at 540,903 to 541,922 _RS02350 Position (kb) 538 539 540 541Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 537.683 kb on - strand, within LRK53_RS02335at 537.683 kb on - strand, within LRK53_RS02335at 537.693 kb on + strand, within LRK53_RS02335at 537.813 kb on + strand, within LRK53_RS02335at 537.888 kb on + strand, within LRK53_RS02335at 538.151 kb on + strand, within LRK53_RS02340at 538.151 kb on + strand, within LRK53_RS02340at 538.151 kb on + strand, within LRK53_RS02340at 538.152 kb on - strand, within LRK53_RS02340at 538.152 kb on - strand, within LRK53_RS02340at 538.202 kb on + strand, within LRK53_RS02340at 538.203 kb on - strand, within LRK53_RS02340at 538.220 kb on + strand, within LRK53_RS02340at 538.221 kb on - strand, within LRK53_RS02340at 538.221 kb on - strand, within LRK53_RS02340at 538.564 kb on - strandat 538.623 kb on - strandat 538.875 kb on - strand, within LRK53_RS02345at 538.986 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.017 kb on + strand, within LRK53_RS02345at 539.018 kb on - strand, within LRK53_RS02345at 539.018 kb on - strand, within LRK53_RS02345at 539.018 kb on - strand, within LRK53_RS02345at 539.018 kb on - strand, within LRK53_RS02345at 539.018 kb on - strand, within LRK53_RS02345at 539.018 kb on - strand, within LRK53_RS02345at 539.394 kb on + strand, within LRK53_RS02345at 539.394 kb on + strand, within LRK53_RS02345at 539.395 kb on - strand, within LRK53_RS02345at 539.395 kb on - strand, within LRK53_RS02345at 539.901 kb on + strand, within LRK53_RS02345at 539.901 kb on + strand, within LRK53_RS02345at 539.901 kb on + strand, within LRK53_RS02345at 539.902 kb on - strand, within LRK53_RS02345at 539.902 kb on - strand, within LRK53_RS02345at 539.902 kb on - strand, within LRK53_RS02345at 539.902 kb on - strand, within LRK53_RS02345at 539.902 kb on - strand, within LRK53_RS02345at 540.241 kb on + strand, within LRK53_RS02345at 540.241 kb on + strand, within LRK53_RS02345at 540.242 kb on - strand, within LRK53_RS02345at 540.242 kb on - strand, within LRK53_RS02345at 540.242 kb on - strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.302 kb on + strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.303 kb on - strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.561 kb on + strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.562 kb on - strand, within LRK53_RS02345at 540.890 kb on + strandat 540.890 kb on + strandat 540.890 kb on + strandat 540.890 kb on + strandat 540.890 kb on + strandat 540.890 kb on + strandat 540.891 kb on - strandat 540.891 kb on - strandat 540.891 kb on - strandat 540.939 kb on + strandat 540.940 kb on - strandat 540.940 kb on - strandat 541.054 kb on + strand, within LRK53_RS02350at 541.054 kb on + strand, within LRK53_RS02350at 541.054 kb on + strand, within LRK53_RS02350at 541.054 kb on + strand, within LRK53_RS02350at 541.054 kb on + strand, within LRK53_RS02350at 541.054 kb on + strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.055 kb on - strand, within LRK53_RS02350at 541.394 kb on - strand, within LRK53_RS02350at 541.786 kb on + strand, within LRK53_RS02350at 541.873 kb on + strandat 541.873 kb on + strandat 541.873 kb on + strandat 541.873 kb on + strandat 541.874 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day4; SGW;
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537,683 - LRK53_RS02335 0.57 +0.5
537,683 - LRK53_RS02335 0.57 -2.9
537,693 + LRK53_RS02335 0.59 +0.7
537,813 + LRK53_RS02335 0.76 +1.5
537,888 + LRK53_RS02335 0.87 +0.3
538,151 + LRK53_RS02340 0.33 -1.0
538,151 + LRK53_RS02340 0.33 -0.5
538,151 + LRK53_RS02340 0.33 -1.2
538,152 - LRK53_RS02340 0.34 +0.5
538,152 - LRK53_RS02340 0.34 -0.2
538,202 + LRK53_RS02340 0.42 -0.7
538,203 - LRK53_RS02340 0.42 -0.2
538,220 + LRK53_RS02340 0.45 -1.3
538,221 - LRK53_RS02340 0.45 -0.2
538,221 - LRK53_RS02340 0.45 -0.0
538,564 - -0.9
538,623 - +0.1
538,875 - LRK53_RS02345 0.15 -0.7
538,986 + LRK53_RS02345 0.19 -0.2
539,017 + LRK53_RS02345 0.21 +0.7
539,017 + LRK53_RS02345 0.21 -1.7
539,017 + LRK53_RS02345 0.21 -0.8
539,017 + LRK53_RS02345 0.21 +0.7
539,017 + LRK53_RS02345 0.21 -0.7
539,017 + LRK53_RS02345 0.21 -0.7
539,017 + LRK53_RS02345 0.21 -0.9
539,017 + LRK53_RS02345 0.21 -0.7
539,017 + LRK53_RS02345 0.21 -1.8
539,017 + LRK53_RS02345 0.21 -1.2
539,017 + LRK53_RS02345 0.21 -1.2
539,017 + LRK53_RS02345 0.21 +0.3
539,018 - LRK53_RS02345 0.21 +0.1
539,018 - LRK53_RS02345 0.21 -0.6
539,018 - LRK53_RS02345 0.21 -2.6
539,018 - LRK53_RS02345 0.21 -0.4
539,018 - LRK53_RS02345 0.21 +0.3
539,018 - LRK53_RS02345 0.21 -2.3
539,394 + LRK53_RS02345 0.37 -0.7
539,394 + LRK53_RS02345 0.37 -1.2
539,395 - LRK53_RS02345 0.37 +1.5
539,395 - LRK53_RS02345 0.37 -0.9
539,901 + LRK53_RS02345 0.58 -1.0
539,901 + LRK53_RS02345 0.58 +0.7
539,901 + LRK53_RS02345 0.58 -1.9
539,902 - LRK53_RS02345 0.58 -0.2
539,902 - LRK53_RS02345 0.58 +0.3
539,902 - LRK53_RS02345 0.58 -0.9
539,902 - LRK53_RS02345 0.58 -0.4
539,902 - LRK53_RS02345 0.58 +1.3
540,241 + LRK53_RS02345 0.73 -2.1
540,241 + LRK53_RS02345 0.73 -0.6
540,242 - LRK53_RS02345 0.73 +1.0
540,242 - LRK53_RS02345 0.73 -1.8
540,242 - LRK53_RS02345 0.73 +0.5
540,302 + LRK53_RS02345 0.76 -2.4
540,302 + LRK53_RS02345 0.76 -2.0
540,302 + LRK53_RS02345 0.76 -0.9
540,302 + LRK53_RS02345 0.76 -0.5
540,302 + LRK53_RS02345 0.76 +1.5
540,302 + LRK53_RS02345 0.76 -0.8
540,302 + LRK53_RS02345 0.76 -1.1
540,302 + LRK53_RS02345 0.76 -1.1
540,302 + LRK53_RS02345 0.76 -0.9
540,303 - LRK53_RS02345 0.76 -2.2
540,303 - LRK53_RS02345 0.76 -0.9
540,303 - LRK53_RS02345 0.76 -1.0
540,303 - LRK53_RS02345 0.76 -0.3
540,303 - LRK53_RS02345 0.76 +1.3
540,303 - LRK53_RS02345 0.76 -0.6
540,303 - LRK53_RS02345 0.76 -1.0
540,303 - LRK53_RS02345 0.76 -2.2
540,303 - LRK53_RS02345 0.76 -1.1
540,561 + LRK53_RS02345 0.87 +0.5
540,561 + LRK53_RS02345 0.87 +0.4
540,561 + LRK53_RS02345 0.87 -0.7
540,561 + LRK53_RS02345 0.87 -0.6
540,561 + LRK53_RS02345 0.87 -0.6
540,561 + LRK53_RS02345 0.87 +0.1
540,561 + LRK53_RS02345 0.87 -1.2
540,561 + LRK53_RS02345 0.87 +1.2
540,561 + LRK53_RS02345 0.87 -0.0
540,561 + LRK53_RS02345 0.87 -2.5
540,561 + LRK53_RS02345 0.87 -0.7
540,561 + LRK53_RS02345 0.87 -1.0
540,561 + LRK53_RS02345 0.87 +2.0
540,561 + LRK53_RS02345 0.87 +0.5
540,562 - LRK53_RS02345 0.87 -3.0
540,562 - LRK53_RS02345 0.87 -0.2
540,562 - LRK53_RS02345 0.87 +0.3
540,562 - LRK53_RS02345 0.87 +0.5
540,562 - LRK53_RS02345 0.87 -0.9
540,562 - LRK53_RS02345 0.87 +0.7
540,562 - LRK53_RS02345 0.87 -2.7
540,562 - LRK53_RS02345 0.87 +0.4
540,890 + +0.1
540,890 + +0.5
540,890 + +0.1
540,890 + -2.1
540,890 + -0.0
540,890 + -1.0
540,891 - +0.3
540,891 - +0.0
540,891 - -1.4
540,939 + -0.9
540,940 - -0.5
540,940 - +0.3
541,054 + LRK53_RS02350 0.15 +1.3
541,054 + LRK53_RS02350 0.15 +0.7
541,054 + LRK53_RS02350 0.15 -0.0
541,054 + LRK53_RS02350 0.15 +0.3
541,054 + LRK53_RS02350 0.15 +0.7
541,054 + LRK53_RS02350 0.15 -0.2
541,055 - LRK53_RS02350 0.15 -0.6
541,055 - LRK53_RS02350 0.15 +0.5
541,055 - LRK53_RS02350 0.15 -0.4
541,055 - LRK53_RS02350 0.15 +0.3
541,055 - LRK53_RS02350 0.15 -0.6
541,055 - LRK53_RS02350 0.15 -3.3
541,055 - LRK53_RS02350 0.15 +1.5
541,055 - LRK53_RS02350 0.15 -1.0
541,055 - LRK53_RS02350 0.15 -2.1
541,394 - LRK53_RS02350 0.48 +0.3
541,786 + LRK53_RS02350 0.87 +0.4
541,873 + +0.5
541,873 + -0.2
541,873 + +0.1
541,873 + +0.3
541,874 - -1.0

Or see this region's nucleotide sequence