Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01820 and LRK53_RS01825 are separated by 0 nucleotides LRK53_RS01825 and LRK53_RS01830 are separated by 4 nucleotides LRK53_RS01830 and LRK53_RS01835 are separated by 114 nucleotides
LRK53_RS01820: LRK53_RS01820 - VOC family protein, at 426,280 to 426,699
_RS01820
LRK53_RS01825: LRK53_RS01825 - hypothetical protein, at 426,700 to 427,341
_RS01825
LRK53_RS01830: LRK53_RS01830 - hypothetical protein, at 427,346 to 428,002
_RS01830
LRK53_RS01835: LRK53_RS01835 - glutamate-1-semialdehyde 2,1-aminomutase, at 428,117 to 429,400
_RS01835
Position (kb) 427
428
429 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 426.475 kb on + strand, within LRK53_RS01820 at 426.475 kb on + strand, within LRK53_RS01820 at 426.476 kb on - strand, within LRK53_RS01820 at 426.476 kb on - strand, within LRK53_RS01820 at 426.476 kb on - strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.526 kb on + strand, within LRK53_RS01820 at 426.527 kb on - strand, within LRK53_RS01820 at 426.527 kb on - strand, within LRK53_RS01820 at 426.527 kb on - strand, within LRK53_RS01820 at 426.527 kb on - strand, within LRK53_RS01820 at 426.527 kb on - strand, within LRK53_RS01820 at 426.527 kb on - strand, within LRK53_RS01820 at 426.527 kb on - strand, within LRK53_RS01820 at 426.527 kb on - strand, within LRK53_RS01820 at 426.527 kb on - strand, within LRK53_RS01820 at 426.527 kb on - strand, within LRK53_RS01820 at 426.527 kb on - strand, within LRK53_RS01820 at 426.527 kb on - strand, within LRK53_RS01820 at 426.527 kb on - strand, within LRK53_RS01820 at 426.527 kb on - strand, within LRK53_RS01820 at 426.527 kb on - strand, within LRK53_RS01820 at 426.527 kb on - strand, within LRK53_RS01820 at 426.527 kb on - strand, within LRK53_RS01820 at 426.559 kb on + strand, within LRK53_RS01820 at 426.559 kb on + strand, within LRK53_RS01820 at 426.559 kb on + strand, within LRK53_RS01820 at 426.559 kb on + strand, within LRK53_RS01820 at 426.559 kb on + strand, within LRK53_RS01820 at 426.559 kb on + strand, within LRK53_RS01820 at 426.559 kb on + strand, within LRK53_RS01820 at 426.559 kb on + strand, within LRK53_RS01820 at 426.560 kb on - strand, within LRK53_RS01820 at 426.560 kb on - strand, within LRK53_RS01820 at 426.560 kb on - strand, within LRK53_RS01820 at 426.560 kb on - strand, within LRK53_RS01820 at 426.560 kb on - strand, within LRK53_RS01820 at 426.560 kb on - strand, within LRK53_RS01820 at 426.560 kb on - strand, within LRK53_RS01820 at 426.697 kb on + strand at 426.697 kb on + strand at 426.697 kb on + strand at 426.751 kb on + strand at 426.751 kb on + strand at 426.751 kb on + strand at 426.752 kb on - strand at 426.774 kb on + strand, within LRK53_RS01825 at 426.774 kb on + strand, within LRK53_RS01825 at 426.774 kb on + strand, within LRK53_RS01825 at 426.774 kb on + strand, within LRK53_RS01825 at 426.774 kb on + strand, within LRK53_RS01825 at 426.775 kb on - strand, within LRK53_RS01825 at 426.775 kb on - strand, within LRK53_RS01825 at 426.775 kb on - strand, within LRK53_RS01825 at 426.775 kb on - strand, within LRK53_RS01825 at 426.775 kb on - strand, within LRK53_RS01825 at 426.775 kb on - strand, within LRK53_RS01825 at 426.775 kb on - strand, within LRK53_RS01825 at 426.775 kb on - strand, within LRK53_RS01825 at 426.863 kb on + strand, within LRK53_RS01825 at 426.863 kb on + strand, within LRK53_RS01825 at 426.863 kb on + strand, within LRK53_RS01825 at 426.863 kb on + strand, within LRK53_RS01825 at 426.863 kb on + strand, within LRK53_RS01825 at 426.863 kb on + strand, within LRK53_RS01825 at 426.863 kb on + strand, within LRK53_RS01825 at 426.863 kb on + strand, within LRK53_RS01825 at 426.863 kb on + strand, within LRK53_RS01825 at 426.863 kb on + strand, within LRK53_RS01825 at 426.863 kb on + strand, within LRK53_RS01825 at 426.863 kb on + strand, within LRK53_RS01825 at 426.864 kb on - strand, within LRK53_RS01825 at 426.864 kb on - strand, within LRK53_RS01825 at 426.864 kb on - strand, within LRK53_RS01825 at 426.864 kb on - strand, within LRK53_RS01825 at 426.864 kb on - strand, within LRK53_RS01825 at 426.864 kb on - strand, within LRK53_RS01825 at 426.864 kb on - strand, within LRK53_RS01825 at 426.864 kb on - strand, within LRK53_RS01825 at 426.864 kb on - strand, within LRK53_RS01825 at 426.864 kb on - strand, within LRK53_RS01825 at 426.864 kb on - strand, within LRK53_RS01825 at 426.912 kb on - strand, within LRK53_RS01825 at 427.055 kb on + strand, within LRK53_RS01825 at 427.055 kb on + strand, within LRK53_RS01825 at 427.055 kb on + strand, within LRK53_RS01825 at 427.055 kb on + strand, within LRK53_RS01825 at 427.055 kb on + strand, within LRK53_RS01825 at 427.055 kb on + strand, within LRK53_RS01825 at 427.056 kb on - strand, within LRK53_RS01825 at 427.056 kb on - strand, within LRK53_RS01825 at 427.056 kb on - strand, within LRK53_RS01825 at 427.056 kb on - strand, within LRK53_RS01825 at 427.056 kb on - strand, within LRK53_RS01825 at 427.056 kb on - strand, within LRK53_RS01825 at 427.056 kb on - strand, within LRK53_RS01825 at 427.092 kb on - strand, within LRK53_RS01825 at 427.133 kb on + strand, within LRK53_RS01825 at 427.133 kb on + strand, within LRK53_RS01825 at 427.133 kb on + strand, within LRK53_RS01825 at 427.133 kb on + strand, within LRK53_RS01825 at 427.134 kb on - strand, within LRK53_RS01825 at 427.134 kb on - strand, within LRK53_RS01825 at 427.134 kb on - strand, within LRK53_RS01825 at 427.134 kb on - strand, within LRK53_RS01825 at 427.134 kb on - strand, within LRK53_RS01825 at 427.347 kb on + strand at 427.347 kb on + strand at 427.348 kb on - strand at 427.348 kb on - strand at 427.348 kb on - strand at 427.348 kb on - strand at 427.348 kb on - strand at 427.348 kb on - strand at 427.348 kb on - strand at 427.716 kb on + strand, within LRK53_RS01830 at 427.716 kb on + strand, within LRK53_RS01830 at 427.717 kb on - strand, within LRK53_RS01830 at 427.717 kb on - strand, within LRK53_RS01830 at 427.819 kb on - strand, within LRK53_RS01830 at 427.945 kb on + strand at 427.945 kb on + strand at 427.945 kb on + strand at 427.946 kb on - strand at 427.946 kb on - strand at 427.946 kb on - strand at 427.946 kb on - strand at 427.946 kb on - strand at 427.946 kb on - strand at 427.946 kb on - strand at 428.020 kb on + strand at 428.020 kb on + strand at 428.020 kb on + strand at 428.020 kb on + strand at 428.020 kb on + strand at 428.020 kb on + strand at 428.020 kb on + strand at 428.020 kb on + strand at 428.020 kb on + strand at 428.020 kb on + strand at 428.020 kb on + strand at 428.020 kb on + strand at 428.020 kb on + strand at 428.021 kb on - strand at 428.021 kb on - strand at 428.021 kb on - strand at 428.021 kb on - strand at 428.021 kb on - strand at 428.021 kb on - strand at 428.067 kb on - strand at 428.085 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 426,475 + LRK53_RS01820 0.46 -2.1 426,475 + LRK53_RS01820 0.46 -0.7 426,476 - LRK53_RS01820 0.47 -1.8 426,476 - LRK53_RS01820 0.47 +0.9 426,476 - LRK53_RS01820 0.47 -2.2 426,526 + LRK53_RS01820 0.59 -0.3 426,526 + LRK53_RS01820 0.59 -0.3 426,526 + LRK53_RS01820 0.59 -0.7 426,526 + LRK53_RS01820 0.59 -2.9 426,526 + LRK53_RS01820 0.59 -1.1 426,526 + LRK53_RS01820 0.59 +0.3 426,526 + LRK53_RS01820 0.59 -0.5 426,526 + LRK53_RS01820 0.59 +1.3 426,526 + LRK53_RS01820 0.59 +0.3 426,526 + LRK53_RS01820 0.59 -2.9 426,526 + LRK53_RS01820 0.59 -0.7 426,526 + LRK53_RS01820 0.59 +0.8 426,526 + LRK53_RS01820 0.59 +0.3 426,526 + LRK53_RS01820 0.59 -0.7 426,526 + LRK53_RS01820 0.59 -1.6 426,526 + LRK53_RS01820 0.59 -0.7 426,526 + LRK53_RS01820 0.59 -0.7 426,526 + LRK53_RS01820 0.59 -0.1 426,526 + LRK53_RS01820 0.59 -0.3 426,526 + LRK53_RS01820 0.59 +0.6 426,526 + LRK53_RS01820 0.59 -0.1 426,526 + LRK53_RS01820 0.59 -0.4 426,526 + LRK53_RS01820 0.59 -1.7 426,526 + LRK53_RS01820 0.59 -0.3 426,526 + LRK53_RS01820 0.59 -1.1 426,526 + LRK53_RS01820 0.59 -2.0 426,526 + LRK53_RS01820 0.59 +0.4 426,526 + LRK53_RS01820 0.59 -0.7 426,526 + LRK53_RS01820 0.59 -0.5 426,526 + LRK53_RS01820 0.59 -1.5 426,526 + LRK53_RS01820 0.59 -0.6 426,526 + LRK53_RS01820 0.59 -0.1 426,526 + LRK53_RS01820 0.59 +1.3 426,527 - LRK53_RS01820 0.59 -1.0 426,527 - LRK53_RS01820 0.59 +0.6 426,527 - LRK53_RS01820 0.59 -1.5 426,527 - LRK53_RS01820 0.59 -0.9 426,527 - LRK53_RS01820 0.59 -0.7 426,527 - LRK53_RS01820 0.59 +1.0 426,527 - LRK53_RS01820 0.59 -1.3 426,527 - LRK53_RS01820 0.59 +0.2 426,527 - LRK53_RS01820 0.59 +1.0 426,527 - LRK53_RS01820 0.59 -0.1 426,527 - LRK53_RS01820 0.59 -0.3 426,527 - LRK53_RS01820 0.59 -0.9 426,527 - LRK53_RS01820 0.59 +0.3 426,527 - LRK53_RS01820 0.59 -1.6 426,527 - LRK53_RS01820 0.59 +0.6 426,527 - LRK53_RS01820 0.59 +0.0 426,527 - LRK53_RS01820 0.59 +0.5 426,559 + LRK53_RS01820 0.66 -0.4 426,559 + LRK53_RS01820 0.66 -0.7 426,559 + LRK53_RS01820 0.66 -2.8 426,559 + LRK53_RS01820 0.66 -0.4 426,559 + LRK53_RS01820 0.66 +0.5 426,559 + LRK53_RS01820 0.66 -1.6 426,559 + LRK53_RS01820 0.66 -0.1 426,559 + LRK53_RS01820 0.66 -0.9 426,560 - LRK53_RS01820 0.67 -0.4 426,560 - LRK53_RS01820 0.67 -1.8 426,560 - LRK53_RS01820 0.67 -1.6 426,560 - LRK53_RS01820 0.67 +0.2 426,560 - LRK53_RS01820 0.67 -0.7 426,560 - LRK53_RS01820 0.67 +0.0 426,560 - LRK53_RS01820 0.67 -0.3 426,697 + -1.8 426,697 + +0.6 426,697 + -0.8 426,751 + -1.4 426,751 + +0.3 426,751 + -1.4 426,752 - -0.4 426,774 + LRK53_RS01825 0.12 -0.4 426,774 + LRK53_RS01825 0.12 -1.2 426,774 + LRK53_RS01825 0.12 -0.5 426,774 + LRK53_RS01825 0.12 -1.3 426,774 + LRK53_RS01825 0.12 -0.3 426,775 - LRK53_RS01825 0.12 -1.0 426,775 - LRK53_RS01825 0.12 -0.7 426,775 - LRK53_RS01825 0.12 -2.0 426,775 - LRK53_RS01825 0.12 -0.3 426,775 - LRK53_RS01825 0.12 -2.9 426,775 - LRK53_RS01825 0.12 +1.5 426,775 - LRK53_RS01825 0.12 +0.0 426,775 - LRK53_RS01825 0.12 -1.3 426,863 + LRK53_RS01825 0.25 -0.6 426,863 + LRK53_RS01825 0.25 -2.1 426,863 + LRK53_RS01825 0.25 +0.5 426,863 + LRK53_RS01825 0.25 -0.1 426,863 + LRK53_RS01825 0.25 -1.8 426,863 + LRK53_RS01825 0.25 -1.1 426,863 + LRK53_RS01825 0.25 -1.2 426,863 + LRK53_RS01825 0.25 +1.2 426,863 + LRK53_RS01825 0.25 -0.3 426,863 + LRK53_RS01825 0.25 -0.8 426,863 + LRK53_RS01825 0.25 -0.4 426,863 + LRK53_RS01825 0.25 -1.2 426,864 - LRK53_RS01825 0.26 -0.3 426,864 - LRK53_RS01825 0.26 -0.5 426,864 - LRK53_RS01825 0.26 +0.3 426,864 - LRK53_RS01825 0.26 -1.6 426,864 - LRK53_RS01825 0.26 +0.6 426,864 - LRK53_RS01825 0.26 -1.1 426,864 - LRK53_RS01825 0.26 -1.8 426,864 - LRK53_RS01825 0.26 +1.0 426,864 - LRK53_RS01825 0.26 -0.6 426,864 - LRK53_RS01825 0.26 +0.2 426,864 - LRK53_RS01825 0.26 -0.1 426,912 - LRK53_RS01825 0.33 -0.4 427,055 + LRK53_RS01825 0.55 -0.2 427,055 + LRK53_RS01825 0.55 -0.9 427,055 + LRK53_RS01825 0.55 +0.2 427,055 + LRK53_RS01825 0.55 +0.4 427,055 + LRK53_RS01825 0.55 -1.4 427,055 + LRK53_RS01825 0.55 +0.0 427,056 - LRK53_RS01825 0.55 -1.0 427,056 - LRK53_RS01825 0.55 -1.4 427,056 - LRK53_RS01825 0.55 -0.3 427,056 - LRK53_RS01825 0.55 -0.5 427,056 - LRK53_RS01825 0.55 -1.3 427,056 - LRK53_RS01825 0.55 -1.8 427,056 - LRK53_RS01825 0.55 +0.7 427,092 - LRK53_RS01825 0.61 -2.4 427,133 + LRK53_RS01825 0.67 -0.8 427,133 + LRK53_RS01825 0.67 -1.5 427,133 + LRK53_RS01825 0.67 -1.2 427,133 + LRK53_RS01825 0.67 -0.3 427,134 - LRK53_RS01825 0.68 +0.2 427,134 - LRK53_RS01825 0.68 -0.6 427,134 - LRK53_RS01825 0.68 +0.3 427,134 - LRK53_RS01825 0.68 +0.2 427,134 - LRK53_RS01825 0.68 -0.8 427,347 + -0.8 427,347 + -0.1 427,348 - +0.0 427,348 - -0.1 427,348 - -1.1 427,348 - -1.5 427,348 - -0.3 427,348 - -2.3 427,348 - -0.6 427,716 + LRK53_RS01830 0.56 -0.8 427,716 + LRK53_RS01830 0.56 -0.1 427,717 - LRK53_RS01830 0.56 -0.5 427,717 - LRK53_RS01830 0.56 -0.3 427,819 - LRK53_RS01830 0.72 -0.6 427,945 + +1.2 427,945 + +0.3 427,945 + -1.6 427,946 - -1.7 427,946 - -2.7 427,946 - +0.2 427,946 - -0.3 427,946 - -0.5 427,946 - -1.9 427,946 - +0.3 428,020 + -0.3 428,020 + -2.0 428,020 + -0.6 428,020 + -1.8 428,020 + -0.2 428,020 + -2.4 428,020 + -0.1 428,020 + -1.3 428,020 + -1.3 428,020 + -0.7 428,020 + +0.3 428,020 + +0.3 428,020 + -1.3 428,021 - +0.1 428,021 - -0.4 428,021 - -1.2 428,021 - +1.9 428,021 - -0.4 428,021 - +1.0 428,067 - -0.3 428,085 + -0.1
Or see this region's nucleotide sequence