Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01715 and LRK53_RS01720 overlap by 4 nucleotides LRK53_RS01720 and LRK53_RS01725 are separated by 264 nucleotides
LRK53_RS01715: LRK53_RS01715 - glycosyltransferase family 4 protein, at 402,914 to 403,990
_RS01715
LRK53_RS01720: LRK53_RS01720 - polysaccharide deacetylase family protein, at 403,987 to 404,688
_RS01720
LRK53_RS01725: LRK53_RS01725 - LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase, at 404,953 to 405,870
_RS01725
Position (kb) 403
404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 403.227 kb on + strand, within LRK53_RS01715 at 403.227 kb on + strand, within LRK53_RS01715 at 403.227 kb on + strand, within LRK53_RS01715 at 403.227 kb on + strand, within LRK53_RS01715 at 403.227 kb on + strand, within LRK53_RS01715 at 403.227 kb on + strand, within LRK53_RS01715 at 403.227 kb on + strand, within LRK53_RS01715 at 403.227 kb on + strand, within LRK53_RS01715 at 403.228 kb on - strand, within LRK53_RS01715 at 403.228 kb on - strand, within LRK53_RS01715 at 403.228 kb on - strand, within LRK53_RS01715 at 403.228 kb on - strand, within LRK53_RS01715 at 403.228 kb on - strand, within LRK53_RS01715 at 403.228 kb on - strand, within LRK53_RS01715 at 403.230 kb on + strand, within LRK53_RS01715 at 403.230 kb on + strand, within LRK53_RS01715 at 403.230 kb on + strand, within LRK53_RS01715 at 403.230 kb on + strand, within LRK53_RS01715 at 403.230 kb on + strand, within LRK53_RS01715 at 403.230 kb on + strand, within LRK53_RS01715 at 403.231 kb on - strand, within LRK53_RS01715 at 403.231 kb on - strand, within LRK53_RS01715 at 403.231 kb on - strand, within LRK53_RS01715 at 403.231 kb on - strand, within LRK53_RS01715 at 403.279 kb on + strand, within LRK53_RS01715 at 403.428 kb on + strand, within LRK53_RS01715 at 403.428 kb on + strand, within LRK53_RS01715 at 403.436 kb on + strand, within LRK53_RS01715 at 403.437 kb on - strand, within LRK53_RS01715 at 403.437 kb on - strand, within LRK53_RS01715 at 403.527 kb on + strand, within LRK53_RS01715 at 403.527 kb on + strand, within LRK53_RS01715 at 403.527 kb on + strand, within LRK53_RS01715 at 403.527 kb on + strand, within LRK53_RS01715 at 403.527 kb on + strand, within LRK53_RS01715 at 403.527 kb on + strand, within LRK53_RS01715 at 403.528 kb on - strand, within LRK53_RS01715 at 403.528 kb on - strand, within LRK53_RS01715 at 403.528 kb on - strand, within LRK53_RS01715 at 403.528 kb on - strand, within LRK53_RS01715 at 403.528 kb on - strand, within LRK53_RS01715 at 403.528 kb on - strand, within LRK53_RS01715 at 403.528 kb on - strand, within LRK53_RS01715 at 403.569 kb on + strand, within LRK53_RS01715 at 403.569 kb on + strand, within LRK53_RS01715 at 403.569 kb on + strand, within LRK53_RS01715 at 403.569 kb on + strand, within LRK53_RS01715 at 403.569 kb on + strand, within LRK53_RS01715 at 403.569 kb on + strand, within LRK53_RS01715 at 403.569 kb on + strand, within LRK53_RS01715 at 403.569 kb on + strand, within LRK53_RS01715 at 403.569 kb on + strand, within LRK53_RS01715 at 403.570 kb on - strand, within LRK53_RS01715 at 403.570 kb on - strand, within LRK53_RS01715 at 403.570 kb on - strand, within LRK53_RS01715 at 403.570 kb on - strand, within LRK53_RS01715 at 403.570 kb on - strand, within LRK53_RS01715 at 403.570 kb on - strand, within LRK53_RS01715 at 403.719 kb on + strand, within LRK53_RS01715 at 403.719 kb on + strand, within LRK53_RS01715 at 403.719 kb on + strand, within LRK53_RS01715 at 403.719 kb on + strand, within LRK53_RS01715 at 403.719 kb on + strand, within LRK53_RS01715 at 403.719 kb on + strand, within LRK53_RS01715 at 403.719 kb on + strand, within LRK53_RS01715 at 403.719 kb on + strand, within LRK53_RS01715 at 403.719 kb on + strand, within LRK53_RS01715 at 403.720 kb on - strand, within LRK53_RS01715 at 403.720 kb on - strand, within LRK53_RS01715 at 403.788 kb on + strand, within LRK53_RS01715 at 403.788 kb on + strand, within LRK53_RS01715 at 403.788 kb on + strand, within LRK53_RS01715 at 403.789 kb on - strand, within LRK53_RS01715 at 403.878 kb on + strand, within LRK53_RS01715 at 403.879 kb on - strand, within LRK53_RS01715 at 404.181 kb on - strand, within LRK53_RS01720 at 404.402 kb on + strand, within LRK53_RS01720 at 404.402 kb on + strand, within LRK53_RS01720 at 404.403 kb on - strand, within LRK53_RS01720 at 404.403 kb on - strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.492 kb on + strand, within LRK53_RS01720 at 404.492 kb on + strand, within LRK53_RS01720 at 404.492 kb on + strand, within LRK53_RS01720 at 404.493 kb on - strand, within LRK53_RS01720 at 404.493 kb on - strand, within LRK53_RS01720 at 404.493 kb on - strand, within LRK53_RS01720 at 404.546 kb on + strand, within LRK53_RS01720 at 404.546 kb on + strand, within LRK53_RS01720 at 404.546 kb on + strand, within LRK53_RS01720 at 404.547 kb on - strand, within LRK53_RS01720 at 404.547 kb on - strand, within LRK53_RS01720 at 404.547 kb on - strand, within LRK53_RS01720 at 404.646 kb on - strand at 404.646 kb on - strand at 404.646 kb on - strand at 404.646 kb on - strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.957 kb on + strand at 404.957 kb on + strand at 404.957 kb on + strand at 404.957 kb on + strand at 404.957 kb on + strand at 404.957 kb on + strand at 404.958 kb on - strand at 404.958 kb on - strand at 404.958 kb on - strand at 404.958 kb on - strand at 404.958 kb on - strand at 404.958 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 403,227 + LRK53_RS01715 0.29 +0.3 403,227 + LRK53_RS01715 0.29 -0.6 403,227 + LRK53_RS01715 0.29 +0.1 403,227 + LRK53_RS01715 0.29 -0.9 403,227 + LRK53_RS01715 0.29 -1.0 403,227 + LRK53_RS01715 0.29 +0.7 403,227 + LRK53_RS01715 0.29 -0.6 403,227 + LRK53_RS01715 0.29 -1.2 403,228 - LRK53_RS01715 0.29 -0.6 403,228 - LRK53_RS01715 0.29 +0.4 403,228 - LRK53_RS01715 0.29 -1.2 403,228 - LRK53_RS01715 0.29 +0.0 403,228 - LRK53_RS01715 0.29 -2.0 403,228 - LRK53_RS01715 0.29 +0.2 403,230 + LRK53_RS01715 0.29 -1.3 403,230 + LRK53_RS01715 0.29 -1.6 403,230 + LRK53_RS01715 0.29 +0.3 403,230 + LRK53_RS01715 0.29 -0.6 403,230 + LRK53_RS01715 0.29 +0.0 403,230 + LRK53_RS01715 0.29 -1.4 403,231 - LRK53_RS01715 0.29 -1.2 403,231 - LRK53_RS01715 0.29 +0.8 403,231 - LRK53_RS01715 0.29 -1.1 403,231 - LRK53_RS01715 0.29 +0.8 403,279 + LRK53_RS01715 0.34 -0.5 403,428 + LRK53_RS01715 0.48 -0.2 403,428 + LRK53_RS01715 0.48 +0.5 403,436 + LRK53_RS01715 0.48 +1.1 403,437 - LRK53_RS01715 0.49 +1.9 403,437 - LRK53_RS01715 0.49 -0.3 403,527 + LRK53_RS01715 0.57 +3.6 403,527 + LRK53_RS01715 0.57 -1.0 403,527 + LRK53_RS01715 0.57 -0.6 403,527 + LRK53_RS01715 0.57 +0.0 403,527 + LRK53_RS01715 0.57 -1.6 403,527 + LRK53_RS01715 0.57 +1.2 403,528 - LRK53_RS01715 0.57 -1.6 403,528 - LRK53_RS01715 0.57 +0.0 403,528 - LRK53_RS01715 0.57 -1.0 403,528 - LRK53_RS01715 0.57 -0.1 403,528 - LRK53_RS01715 0.57 -2.3 403,528 - LRK53_RS01715 0.57 -0.8 403,528 - LRK53_RS01715 0.57 +0.5 403,569 + LRK53_RS01715 0.61 -0.7 403,569 + LRK53_RS01715 0.61 +0.0 403,569 + LRK53_RS01715 0.61 +0.4 403,569 + LRK53_RS01715 0.61 -0.9 403,569 + LRK53_RS01715 0.61 -1.1 403,569 + LRK53_RS01715 0.61 -0.6 403,569 + LRK53_RS01715 0.61 -2.1 403,569 + LRK53_RS01715 0.61 -0.8 403,569 + LRK53_RS01715 0.61 -1.7 403,570 - LRK53_RS01715 0.61 -1.0 403,570 - LRK53_RS01715 0.61 -1.8 403,570 - LRK53_RS01715 0.61 -2.0 403,570 - LRK53_RS01715 0.61 -1.8 403,570 - LRK53_RS01715 0.61 -1.0 403,570 - LRK53_RS01715 0.61 -0.7 403,719 + LRK53_RS01715 0.75 -1.1 403,719 + LRK53_RS01715 0.75 -1.0 403,719 + LRK53_RS01715 0.75 +0.9 403,719 + LRK53_RS01715 0.75 -0.1 403,719 + LRK53_RS01715 0.75 -1.4 403,719 + LRK53_RS01715 0.75 -0.3 403,719 + LRK53_RS01715 0.75 -0.3 403,719 + LRK53_RS01715 0.75 -1.6 403,719 + LRK53_RS01715 0.75 +1.1 403,720 - LRK53_RS01715 0.75 -1.7 403,720 - LRK53_RS01715 0.75 -1.9 403,788 + LRK53_RS01715 0.81 -1.0 403,788 + LRK53_RS01715 0.81 -0.4 403,788 + LRK53_RS01715 0.81 +0.0 403,789 - LRK53_RS01715 0.81 -2.6 403,878 + LRK53_RS01715 0.90 +1.1 403,879 - LRK53_RS01715 0.90 -1.1 404,181 - LRK53_RS01720 0.28 +1.9 404,402 + LRK53_RS01720 0.59 -1.1 404,402 + LRK53_RS01720 0.59 -0.4 404,403 - LRK53_RS01720 0.59 -0.1 404,403 - LRK53_RS01720 0.59 -1.1 404,429 + LRK53_RS01720 0.63 +0.0 404,429 + LRK53_RS01720 0.63 -1.4 404,429 + LRK53_RS01720 0.63 -1.3 404,429 + LRK53_RS01720 0.63 -2.2 404,429 + LRK53_RS01720 0.63 +0.5 404,429 + LRK53_RS01720 0.63 +2.8 404,429 + LRK53_RS01720 0.63 +0.3 404,429 + LRK53_RS01720 0.63 +0.0 404,429 + LRK53_RS01720 0.63 +0.8 404,429 + LRK53_RS01720 0.63 -0.5 404,429 + LRK53_RS01720 0.63 -0.6 404,429 + LRK53_RS01720 0.63 +0.3 404,429 + LRK53_RS01720 0.63 -1.4 404,429 + LRK53_RS01720 0.63 +1.3 404,429 + LRK53_RS01720 0.63 -1.5 404,429 + LRK53_RS01720 0.63 +0.2 404,429 + LRK53_RS01720 0.63 +1.5 404,430 - LRK53_RS01720 0.63 -0.6 404,430 - LRK53_RS01720 0.63 -0.1 404,430 - LRK53_RS01720 0.63 -0.1 404,430 - LRK53_RS01720 0.63 -0.6 404,430 - LRK53_RS01720 0.63 -0.2 404,430 - LRK53_RS01720 0.63 -1.8 404,430 - LRK53_RS01720 0.63 -0.2 404,430 - LRK53_RS01720 0.63 -1.1 404,430 - LRK53_RS01720 0.63 -1.5 404,430 - LRK53_RS01720 0.63 +0.3 404,430 - LRK53_RS01720 0.63 +0.3 404,430 - LRK53_RS01720 0.63 -1.8 404,492 + LRK53_RS01720 0.72 +1.5 404,492 + LRK53_RS01720 0.72 +0.5 404,492 + LRK53_RS01720 0.72 -0.1 404,493 - LRK53_RS01720 0.72 +0.0 404,493 - LRK53_RS01720 0.72 -1.9 404,493 - LRK53_RS01720 0.72 -1.7 404,546 + LRK53_RS01720 0.80 -1.7 404,546 + LRK53_RS01720 0.80 +0.2 404,546 + LRK53_RS01720 0.80 -1.2 404,547 - LRK53_RS01720 0.80 -0.9 404,547 - LRK53_RS01720 0.80 -0.0 404,547 - LRK53_RS01720 0.80 -0.3 404,646 - -0.5 404,646 - -0.2 404,646 - +2.1 404,646 - +0.1 404,684 + -0.9 404,684 + -0.5 404,684 + +0.8 404,684 + +0.9 404,684 + -0.5 404,684 + -0.6 404,684 + -1.2 404,684 + +0.3 404,684 + -0.1 404,684 + +0.0 404,684 + +0.1 404,684 + +1.2 404,684 + -0.4 404,684 + -1.2 404,684 + +0.0 404,684 + -3.4 404,684 + -0.5 404,684 + -1.0 404,684 + -1.7 404,684 + -1.2 404,684 + -0.7 404,684 + -0.1 404,684 + -2.9 404,685 - +1.6 404,685 - +0.5 404,685 - +0.5 404,685 - +0.0 404,685 - -0.1 404,685 - -2.4 404,685 - +0.1 404,685 - -0.6 404,685 - -2.3 404,685 - +0.0 404,685 - +0.3 404,685 - -1.2 404,685 - -0.8 404,685 - +0.0 404,685 - -2.0 404,685 - -0.1 404,685 - -3.0 404,685 - -0.1 404,685 - -0.7 404,685 - -2.6 404,685 - -1.6 404,685 - +0.9 404,957 + -0.9 404,957 + -1.7 404,957 + -0.2 404,957 + -0.5 404,957 + +0.0 404,957 + -0.7 404,958 - +1.5 404,958 - -0.1 404,958 - +1.1 404,958 - +1.6 404,958 - +1.2 404,958 - -1.6
Or see this region's nucleotide sequence