Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01480 and LRK53_RS01485 overlap by 41 nucleotides LRK53_RS01485 and LRK53_RS01490 are separated by 2 nucleotides LRK53_RS01490 and LRK53_RS01495 overlap by 1 nucleotides LRK53_RS01495 and LRK53_RS01500 are separated by 190 nucleotides
LRK53_RS01480: LRK53_RS01480 - winged helix-turn-helix domain-containing protein, at 355,096 to 355,620
_RS01480
LRK53_RS01485: LRK53_RS01485 - IS630 family transposase, at 355,580 to 356,161
_RS01485
LRK53_RS01490: LRK53_RS01490 - glutathionylspermidine synthase family protein, at 356,164 to 357,342
_RS01490
LRK53_RS01495: LRK53_RS01495 - DUF1190 domain-containing protein, at 357,342 to 357,884
_RS01495
LRK53_RS01500: LRK53_RS01500 - serine/threonine protein kinase, at 358,075 to 359,037
_RS01500
Position (kb) 356
357
358 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 356.142 kb on + strand at 356.159 kb on + strand at 356.159 kb on + strand at 356.285 kb on - strand, within LRK53_RS01490 at 356.364 kb on - strand, within LRK53_RS01490 at 356.603 kb on + strand, within LRK53_RS01490 at 356.604 kb on - strand, within LRK53_RS01490 at 356.604 kb on - strand, within LRK53_RS01490 at 356.604 kb on - strand, within LRK53_RS01490 at 356.643 kb on - strand, within LRK53_RS01490 at 356.771 kb on + strand, within LRK53_RS01490 at 356.771 kb on + strand, within LRK53_RS01490 at 356.771 kb on + strand, within LRK53_RS01490 at 356.771 kb on + strand, within LRK53_RS01490 at 356.771 kb on + strand, within LRK53_RS01490 at 356.772 kb on - strand, within LRK53_RS01490 at 356.772 kb on - strand, within LRK53_RS01490 at 356.772 kb on - strand, within LRK53_RS01490 at 356.772 kb on - strand, within LRK53_RS01490 at 356.772 kb on - strand, within LRK53_RS01490 at 356.876 kb on + strand, within LRK53_RS01490 at 356.876 kb on + strand, within LRK53_RS01490 at 356.876 kb on + strand, within LRK53_RS01490 at 356.876 kb on + strand, within LRK53_RS01490 at 356.876 kb on + strand, within LRK53_RS01490 at 356.876 kb on + strand, within LRK53_RS01490 at 356.877 kb on - strand, within LRK53_RS01490 at 356.877 kb on - strand, within LRK53_RS01490 at 356.877 kb on - strand, within LRK53_RS01490 at 356.877 kb on - strand, within LRK53_RS01490 at 356.877 kb on - strand, within LRK53_RS01490 at 356.877 kb on - strand, within LRK53_RS01490 at 356.877 kb on - strand, within LRK53_RS01490 at 356.877 kb on - strand, within LRK53_RS01490 at 356.877 kb on - strand, within LRK53_RS01490 at 356.877 kb on - strand, within LRK53_RS01490 at 356.987 kb on + strand, within LRK53_RS01490 at 356.987 kb on + strand, within LRK53_RS01490 at 356.987 kb on + strand, within LRK53_RS01490 at 356.987 kb on + strand, within LRK53_RS01490 at 356.987 kb on + strand, within LRK53_RS01490 at 356.988 kb on - strand, within LRK53_RS01490 at 356.988 kb on - strand, within LRK53_RS01490 at 356.988 kb on - strand, within LRK53_RS01490 at 356.988 kb on - strand, within LRK53_RS01490 at 356.988 kb on - strand, within LRK53_RS01490 at 356.988 kb on - strand, within LRK53_RS01490 at 356.999 kb on + strand, within LRK53_RS01490 at 356.999 kb on + strand, within LRK53_RS01490 at 356.999 kb on + strand, within LRK53_RS01490 at 357.000 kb on - strand, within LRK53_RS01490 at 357.026 kb on + strand, within LRK53_RS01490 at 357.026 kb on + strand, within LRK53_RS01490 at 357.047 kb on + strand, within LRK53_RS01490 at 357.047 kb on + strand, within LRK53_RS01490 at 357.048 kb on - strand, within LRK53_RS01490 at 357.053 kb on + strand, within LRK53_RS01490 at 357.054 kb on - strand, within LRK53_RS01490 at 357.054 kb on - strand, within LRK53_RS01490 at 357.054 kb on - strand, within LRK53_RS01490 at 357.230 kb on + strand at 357.230 kb on + strand at 357.230 kb on + strand at 357.230 kb on + strand at 357.230 kb on + strand at 357.230 kb on + strand at 357.230 kb on + strand at 357.230 kb on + strand at 357.230 kb on + strand at 357.230 kb on + strand at 357.230 kb on + strand at 357.230 kb on + strand at 357.230 kb on + strand at 357.231 kb on - strand at 357.231 kb on - strand at 357.231 kb on - strand at 357.231 kb on - strand at 357.231 kb on - strand at 357.231 kb on - strand at 357.231 kb on - strand at 357.231 kb on - strand at 357.231 kb on - strand at 357.233 kb on + strand at 357.233 kb on + strand at 357.233 kb on + strand at 357.233 kb on + strand at 357.233 kb on + strand at 357.234 kb on - strand at 357.234 kb on - strand at 357.251 kb on + strand at 357.653 kb on - strand, within LRK53_RS01495 at 357.653 kb on - strand, within LRK53_RS01495 at 357.740 kb on + strand, within LRK53_RS01495 at 357.740 kb on + strand, within LRK53_RS01495 at 357.740 kb on + strand, within LRK53_RS01495 at 357.741 kb on - strand, within LRK53_RS01495 at 357.784 kb on + strand, within LRK53_RS01495 at 357.784 kb on + strand, within LRK53_RS01495 at 357.784 kb on + strand, within LRK53_RS01495 at 357.784 kb on + strand, within LRK53_RS01495 at 357.784 kb on + strand, within LRK53_RS01495 at 357.784 kb on + strand, within LRK53_RS01495 at 357.784 kb on + strand, within LRK53_RS01495 at 357.784 kb on + strand, within LRK53_RS01495 at 357.784 kb on + strand, within LRK53_RS01495 at 357.784 kb on + strand, within LRK53_RS01495 at 357.784 kb on + strand, within LRK53_RS01495 at 357.784 kb on + strand, within LRK53_RS01495 at 357.784 kb on + strand, within LRK53_RS01495 at 357.784 kb on + strand, within LRK53_RS01495 at 357.784 kb on + strand, within LRK53_RS01495 at 357.784 kb on + strand, within LRK53_RS01495 at 357.784 kb on + strand, within LRK53_RS01495 at 357.785 kb on - strand, within LRK53_RS01495 at 357.785 kb on - strand, within LRK53_RS01495 at 357.785 kb on - strand, within LRK53_RS01495 at 357.785 kb on - strand, within LRK53_RS01495 at 357.785 kb on - strand, within LRK53_RS01495 at 357.785 kb on - strand, within LRK53_RS01495 at 357.785 kb on - strand, within LRK53_RS01495 at 357.785 kb on - strand, within LRK53_RS01495 at 357.785 kb on - strand, within LRK53_RS01495 at 357.785 kb on - strand, within LRK53_RS01495 at 357.785 kb on - strand, within LRK53_RS01495 at 357.785 kb on - strand, within LRK53_RS01495 at 357.785 kb on - strand, within LRK53_RS01495 at 357.785 kb on - strand, within LRK53_RS01495 at 357.966 kb on - strand at 357.966 kb on - strand at 358.060 kb on + strand at 358.060 kb on + strand at 358.060 kb on + strand at 358.076 kb on + strand at 358.076 kb on + strand at 358.076 kb on + strand at 358.076 kb on + strand at 358.077 kb on - strand at 358.077 kb on - strand at 358.077 kb on - strand at 358.077 kb on - strand at 358.202 kb on + strand, within LRK53_RS01500 at 358.203 kb on - strand, within LRK53_RS01500
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 356,142 + -0.3 356,159 + +0.4 356,159 + -1.7 356,285 - LRK53_RS01490 0.10 -1.4 356,364 - LRK53_RS01490 0.17 +0.4 356,603 + LRK53_RS01490 0.37 -0.8 356,604 - LRK53_RS01490 0.37 -1.9 356,604 - LRK53_RS01490 0.37 +0.1 356,604 - LRK53_RS01490 0.37 +1.8 356,643 - LRK53_RS01490 0.41 +0.6 356,771 + LRK53_RS01490 0.51 +0.9 356,771 + LRK53_RS01490 0.51 +1.8 356,771 + LRK53_RS01490 0.51 -0.1 356,771 + LRK53_RS01490 0.51 -0.1 356,771 + LRK53_RS01490 0.51 -1.0 356,772 - LRK53_RS01490 0.52 +0.4 356,772 - LRK53_RS01490 0.52 -0.5 356,772 - LRK53_RS01490 0.52 +0.3 356,772 - LRK53_RS01490 0.52 -2.9 356,772 - LRK53_RS01490 0.52 -0.6 356,876 + LRK53_RS01490 0.60 -0.3 356,876 + LRK53_RS01490 0.60 +0.3 356,876 + LRK53_RS01490 0.60 -1.9 356,876 + LRK53_RS01490 0.60 -0.9 356,876 + LRK53_RS01490 0.60 -1.9 356,876 + LRK53_RS01490 0.60 -0.4 356,877 - LRK53_RS01490 0.60 -0.3 356,877 - LRK53_RS01490 0.60 +0.0 356,877 - LRK53_RS01490 0.60 +0.6 356,877 - LRK53_RS01490 0.60 -0.1 356,877 - LRK53_RS01490 0.60 -0.9 356,877 - LRK53_RS01490 0.60 -2.4 356,877 - LRK53_RS01490 0.60 +1.1 356,877 - LRK53_RS01490 0.60 +0.3 356,877 - LRK53_RS01490 0.60 -0.2 356,877 - LRK53_RS01490 0.60 +0.4 356,987 + LRK53_RS01490 0.70 -1.4 356,987 + LRK53_RS01490 0.70 -1.0 356,987 + LRK53_RS01490 0.70 -0.1 356,987 + LRK53_RS01490 0.70 +1.8 356,987 + LRK53_RS01490 0.70 -0.3 356,988 - LRK53_RS01490 0.70 -1.7 356,988 - LRK53_RS01490 0.70 +0.1 356,988 - LRK53_RS01490 0.70 +0.4 356,988 - LRK53_RS01490 0.70 -0.1 356,988 - LRK53_RS01490 0.70 -1.0 356,988 - LRK53_RS01490 0.70 -1.3 356,999 + LRK53_RS01490 0.71 -1.4 356,999 + LRK53_RS01490 0.71 -1.5 356,999 + LRK53_RS01490 0.71 -1.5 357,000 - LRK53_RS01490 0.71 +0.2 357,026 + LRK53_RS01490 0.73 +0.5 357,026 + LRK53_RS01490 0.73 +0.2 357,047 + LRK53_RS01490 0.75 -2.0 357,047 + LRK53_RS01490 0.75 -0.5 357,048 - LRK53_RS01490 0.75 -1.0 357,053 + LRK53_RS01490 0.75 -0.1 357,054 - LRK53_RS01490 0.75 -2.1 357,054 - LRK53_RS01490 0.75 -1.2 357,054 - LRK53_RS01490 0.75 -0.6 357,230 + -0.7 357,230 + +0.8 357,230 + -1.5 357,230 + +1.4 357,230 + -0.9 357,230 + +1.3 357,230 + -0.0 357,230 + -0.1 357,230 + -1.2 357,230 + +0.6 357,230 + -1.9 357,230 + +1.3 357,230 + -1.7 357,231 - -0.6 357,231 - -1.3 357,231 - +0.2 357,231 - -2.7 357,231 - -0.3 357,231 - -0.4 357,231 - -2.1 357,231 - -0.6 357,231 - +0.7 357,233 + -0.5 357,233 + -0.7 357,233 + -1.7 357,233 + +0.4 357,233 + -0.4 357,234 - -1.5 357,234 - -0.6 357,251 + -0.3 357,653 - LRK53_RS01495 0.57 -0.1 357,653 - LRK53_RS01495 0.57 -0.9 357,740 + LRK53_RS01495 0.73 -0.8 357,740 + LRK53_RS01495 0.73 -0.5 357,740 + LRK53_RS01495 0.73 -2.3 357,741 - LRK53_RS01495 0.73 +0.0 357,784 + LRK53_RS01495 0.81 +0.2 357,784 + LRK53_RS01495 0.81 -1.0 357,784 + LRK53_RS01495 0.81 +0.8 357,784 + LRK53_RS01495 0.81 -0.0 357,784 + LRK53_RS01495 0.81 -0.1 357,784 + LRK53_RS01495 0.81 +1.2 357,784 + LRK53_RS01495 0.81 -1.3 357,784 + LRK53_RS01495 0.81 -1.2 357,784 + LRK53_RS01495 0.81 +0.8 357,784 + LRK53_RS01495 0.81 -0.6 357,784 + LRK53_RS01495 0.81 -0.2 357,784 + LRK53_RS01495 0.81 -0.7 357,784 + LRK53_RS01495 0.81 +0.4 357,784 + LRK53_RS01495 0.81 +0.6 357,784 + LRK53_RS01495 0.81 +0.3 357,784 + LRK53_RS01495 0.81 -1.2 357,784 + LRK53_RS01495 0.81 +0.6 357,785 - LRK53_RS01495 0.82 +0.4 357,785 - LRK53_RS01495 0.82 +0.4 357,785 - LRK53_RS01495 0.82 -2.0 357,785 - LRK53_RS01495 0.82 -0.5 357,785 - LRK53_RS01495 0.82 -0.4 357,785 - LRK53_RS01495 0.82 +1.1 357,785 - LRK53_RS01495 0.82 +0.1 357,785 - LRK53_RS01495 0.82 -0.4 357,785 - LRK53_RS01495 0.82 -1.0 357,785 - LRK53_RS01495 0.82 -1.4 357,785 - LRK53_RS01495 0.82 -1.3 357,785 - LRK53_RS01495 0.82 -2.2 357,785 - LRK53_RS01495 0.82 -0.2 357,785 - LRK53_RS01495 0.82 -1.2 357,966 - -0.3 357,966 - -0.4 358,060 + +2.9 358,060 + -0.3 358,060 + -0.9 358,076 + -3.3 358,076 + -0.1 358,076 + +0.7 358,076 + -1.7 358,077 - -0.9 358,077 - +2.8 358,077 - -2.4 358,077 - -0.5 358,202 + LRK53_RS01500 0.13 +0.4 358,203 - LRK53_RS01500 0.13 +0.1
Or see this region's nucleotide sequence