Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01325 and LRK53_RS01330 are separated by 21 nucleotides LRK53_RS01330 and LRK53_RS01335 are separated by 435 nucleotides
LRK53_RS01325: LRK53_RS01325 - magnesium-translocating P-type ATPase, at 324,817 to 327,471
_RS01325
LRK53_RS01330: LRK53_RS01330 - hypothetical protein, at 327,493 to 327,738
_RS01330
LRK53_RS01335: LRK53_RS01335 - bile acid:sodium symporter, at 328,174 to 329,169
_RS01335
Position (kb) 327
328 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 326.863 kb on + strand, within LRK53_RS01325 at 326.863 kb on + strand, within LRK53_RS01325 at 326.863 kb on + strand, within LRK53_RS01325 at 326.864 kb on - strand, within LRK53_RS01325 at 326.864 kb on - strand, within LRK53_RS01325 at 327.028 kb on + strand, within LRK53_RS01325 at 327.029 kb on - strand, within LRK53_RS01325 at 327.076 kb on - strand, within LRK53_RS01325 at 327.076 kb on - strand, within LRK53_RS01325 at 327.442 kb on + strand at 327.442 kb on + strand at 327.442 kb on + strand at 327.442 kb on + strand at 327.443 kb on - strand at 327.443 kb on - strand at 327.443 kb on - strand at 327.443 kb on - strand at 327.687 kb on + strand, within LRK53_RS01330 at 327.687 kb on + strand, within LRK53_RS01330 at 327.687 kb on + strand, within LRK53_RS01330 at 327.687 kb on + strand, within LRK53_RS01330 at 327.687 kb on + strand, within LRK53_RS01330 at 327.687 kb on + strand, within LRK53_RS01330 at 327.687 kb on + strand, within LRK53_RS01330 at 327.687 kb on + strand, within LRK53_RS01330 at 327.688 kb on - strand, within LRK53_RS01330 at 327.688 kb on - strand, within LRK53_RS01330 at 327.688 kb on - strand, within LRK53_RS01330 at 327.847 kb on - strand at 327.965 kb on - strand at 327.965 kb on - strand at 328.003 kb on + strand at 328.003 kb on + strand at 328.004 kb on - strand at 328.004 kb on - strand at 328.130 kb on + strand at 328.130 kb on + strand at 328.131 kb on - strand at 328.220 kb on + strand at 328.221 kb on - strand at 328.431 kb on + strand, within LRK53_RS01335 at 328.431 kb on + strand, within LRK53_RS01335 at 328.431 kb on + strand, within LRK53_RS01335 at 328.431 kb on + strand, within LRK53_RS01335 at 328.431 kb on + strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335 at 328.432 kb on - strand, within LRK53_RS01335 at 328.541 kb on + strand, within LRK53_RS01335 at 328.541 kb on + strand, within LRK53_RS01335 at 328.541 kb on + strand, within LRK53_RS01335 at 328.542 kb on - strand, within LRK53_RS01335 at 328.542 kb on - strand, within LRK53_RS01335 at 328.542 kb on - strand, within LRK53_RS01335 at 328.542 kb on - strand, within LRK53_RS01335
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 326,863 + LRK53_RS01325 0.77 -0.6 326,863 + LRK53_RS01325 0.77 -0.2 326,863 + LRK53_RS01325 0.77 -1.3 326,864 - LRK53_RS01325 0.77 -0.3 326,864 - LRK53_RS01325 0.77 -0.3 327,028 + LRK53_RS01325 0.83 -0.1 327,029 - LRK53_RS01325 0.83 -0.6 327,076 - LRK53_RS01325 0.85 +1.2 327,076 - LRK53_RS01325 0.85 -0.6 327,442 + -0.3 327,442 + +1.4 327,442 + -0.4 327,442 + -0.2 327,443 - +0.4 327,443 - -0.5 327,443 - -0.2 327,443 - -0.8 327,687 + LRK53_RS01330 0.79 -1.8 327,687 + LRK53_RS01330 0.79 +1.0 327,687 + LRK53_RS01330 0.79 -0.8 327,687 + LRK53_RS01330 0.79 -0.9 327,687 + LRK53_RS01330 0.79 +0.1 327,687 + LRK53_RS01330 0.79 +0.1 327,687 + LRK53_RS01330 0.79 +0.7 327,687 + LRK53_RS01330 0.79 -0.8 327,688 - LRK53_RS01330 0.79 -0.4 327,688 - LRK53_RS01330 0.79 +0.7 327,688 - LRK53_RS01330 0.79 -0.6 327,847 - -1.5 327,965 - -0.7 327,965 - -0.5 328,003 + -0.8 328,003 + -1.4 328,004 - +0.1 328,004 - +0.4 328,130 + -0.3 328,130 + -0.6 328,131 - -0.9 328,220 + -2.0 328,221 - -1.0 328,431 + LRK53_RS01335 0.26 -0.6 328,431 + LRK53_RS01335 0.26 -2.1 328,431 + LRK53_RS01335 0.26 +3.4 328,431 + LRK53_RS01335 0.26 +0.8 328,431 + LRK53_RS01335 0.26 +0.8 328,432 - LRK53_RS01335 0.26 +0.6 328,432 - LRK53_RS01335 0.26 +0.1 328,432 - LRK53_RS01335 0.26 -2.3 328,432 - LRK53_RS01335 0.26 -0.2 328,432 - LRK53_RS01335 0.26 +0.1 328,432 - LRK53_RS01335 0.26 +1.1 328,432 - LRK53_RS01335 0.26 -1.8 328,541 + LRK53_RS01335 0.37 -0.7 328,541 + LRK53_RS01335 0.37 -0.5 328,541 + LRK53_RS01335 0.37 -1.6 328,542 - LRK53_RS01335 0.37 -1.0 328,542 - LRK53_RS01335 0.37 +0.4 328,542 - LRK53_RS01335 0.37 +0.1 328,542 - LRK53_RS01335 0.37 -0.5
Or see this region's nucleotide sequence