Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01180 and LRK53_RS01185 are separated by 121 nucleotides LRK53_RS01185 and LRK53_RS01190 are separated by 56 nucleotides LRK53_RS01190 and LRK53_RS01195 overlap by 4 nucleotides LRK53_RS01195 and LRK53_RS01200 are separated by 53 nucleotides
LRK53_RS01180: LRK53_RS01180 - GTP-binding protein, at 293,615 to 294,322
_RS01180
LRK53_RS01185: LRK53_RS01185 - GAF domain-containing protein, at 294,444 to 294,935
_RS01185
LRK53_RS01190: LRK53_RS01190 - hypothetical protein, at 294,992 to 295,183
_RS01190
LRK53_RS01195: LRK53_RS01195 - dethiobiotin synthase, at 295,180 to 295,857
_RS01195
LRK53_RS01200: LRK53_RS01200 - hypothetical protein, at 295,911 to 296,258
_RS01200
Position (kb) 294
295
296 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 294.328 kb on - strand at 294.328 kb on - strand at 294.328 kb on - strand at 294.328 kb on - strand at 294.328 kb on - strand at 294.328 kb on - strand at 294.422 kb on + strand at 294.422 kb on + strand at 294.422 kb on + strand at 294.422 kb on + strand at 294.422 kb on + strand at 294.422 kb on + strand at 294.422 kb on + strand at 294.422 kb on + strand at 294.760 kb on + strand, within LRK53_RS01185 at 294.760 kb on + strand, within LRK53_RS01185 at 294.760 kb on + strand, within LRK53_RS01185 at 294.760 kb on + strand, within LRK53_RS01185 at 294.761 kb on - strand, within LRK53_RS01185 at 294.761 kb on - strand, within LRK53_RS01185 at 294.761 kb on - strand, within LRK53_RS01185 at 294.761 kb on - strand, within LRK53_RS01185 at 294.766 kb on + strand, within LRK53_RS01185 at 294.766 kb on + strand, within LRK53_RS01185 at 294.766 kb on + strand, within LRK53_RS01185 at 294.766 kb on + strand, within LRK53_RS01185 at 294.767 kb on - strand, within LRK53_RS01185 at 294.767 kb on - strand, within LRK53_RS01185 at 294.767 kb on - strand, within LRK53_RS01185 at 294.767 kb on - strand, within LRK53_RS01185 at 294.802 kb on + strand, within LRK53_RS01185 at 294.889 kb on + strand at 294.889 kb on + strand at 294.889 kb on + strand at 294.890 kb on - strand at 294.890 kb on - strand at 294.890 kb on - strand at 294.890 kb on - strand at 294.890 kb on - strand at 294.890 kb on - strand at 294.910 kb on + strand at 294.910 kb on + strand at 294.910 kb on + strand at 294.910 kb on + strand at 294.910 kb on + strand at 294.910 kb on + strand at 294.910 kb on + strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.961 kb on + strand at 294.961 kb on + strand at 294.962 kb on - strand at 294.962 kb on - strand at 294.962 kb on - strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.965 kb on - strand at 294.965 kb on - strand at 294.965 kb on - strand at 294.965 kb on - strand at 294.965 kb on - strand at 294.965 kb on - strand at 294.965 kb on - strand at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.384 kb on + strand, within LRK53_RS01195 at 295.384 kb on + strand, within LRK53_RS01195 at 295.826 kb on - strand at 295.926 kb on + strand at 295.926 kb on + strand at 295.926 kb on + strand at 295.926 kb on + strand at 295.926 kb on + strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.983 kb on + strand, within LRK53_RS01200
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 294,328 - -1.2 294,328 - -2.8 294,328 - -1.9 294,328 - +0.2 294,328 - -1.2 294,328 - -0.5 294,422 + -0.3 294,422 + +1.8 294,422 + -1.7 294,422 + -2.2 294,422 + -0.7 294,422 + -0.6 294,422 + -1.4 294,422 + -1.1 294,760 + LRK53_RS01185 0.64 -1.5 294,760 + LRK53_RS01185 0.64 -0.2 294,760 + LRK53_RS01185 0.64 +0.2 294,760 + LRK53_RS01185 0.64 -1.5 294,761 - LRK53_RS01185 0.64 -0.7 294,761 - LRK53_RS01185 0.64 -0.7 294,761 - LRK53_RS01185 0.64 -2.8 294,761 - LRK53_RS01185 0.64 +0.0 294,766 + LRK53_RS01185 0.65 -0.3 294,766 + LRK53_RS01185 0.65 -1.6 294,766 + LRK53_RS01185 0.65 +0.6 294,766 + LRK53_RS01185 0.65 +0.1 294,767 - LRK53_RS01185 0.66 -0.9 294,767 - LRK53_RS01185 0.66 -0.0 294,767 - LRK53_RS01185 0.66 +0.6 294,767 - LRK53_RS01185 0.66 +0.1 294,802 + LRK53_RS01185 0.73 -0.0 294,889 + +0.2 294,889 + -0.8 294,889 + +1.1 294,890 - -1.6 294,890 - +0.2 294,890 - -0.9 294,890 - -1.0 294,890 - -2.0 294,890 - -0.9 294,910 + +0.1 294,910 + +0.3 294,910 + -0.0 294,910 + +2.2 294,910 + +2.1 294,910 + +0.6 294,910 + -0.3 294,911 - -1.8 294,911 - +1.4 294,911 - -3.4 294,911 - -1.1 294,911 - +0.4 294,911 - -2.1 294,911 - -2.2 294,911 - +0.6 294,961 + -1.8 294,961 + -2.1 294,962 - -1.4 294,962 - -0.0 294,962 - +0.7 294,964 + -0.4 294,964 + -0.2 294,964 + +0.6 294,964 + +0.1 294,964 + -1.8 294,964 + +0.2 294,964 + -0.3 294,965 - -2.6 294,965 - -1.2 294,965 - +0.2 294,965 - -1.6 294,965 - +0.6 294,965 - -1.6 294,965 - -1.4 295,118 + LRK53_RS01190 0.66 -3.3 295,118 + LRK53_RS01190 0.66 +0.5 295,118 + LRK53_RS01190 0.66 -1.0 295,118 + LRK53_RS01190 0.66 +0.1 295,118 + LRK53_RS01190 0.66 -0.9 295,118 + LRK53_RS01190 0.66 -2.0 295,118 + LRK53_RS01190 0.66 -0.6 295,118 + LRK53_RS01190 0.66 -1.6 295,118 + LRK53_RS01190 0.66 -0.8 295,118 + LRK53_RS01190 0.66 -1.7 295,118 + LRK53_RS01190 0.66 +0.4 295,119 - LRK53_RS01190 0.66 +1.1 295,119 - LRK53_RS01190 0.66 -1.6 295,119 - LRK53_RS01190 0.66 -1.2 295,119 - LRK53_RS01190 0.66 +0.4 295,119 - LRK53_RS01190 0.66 -0.5 295,119 - LRK53_RS01190 0.66 -1.3 295,119 - LRK53_RS01190 0.66 -1.9 295,384 + LRK53_RS01195 0.30 +0.6 295,384 + LRK53_RS01195 0.30 -1.3 295,826 - -0.2 295,926 + -0.2 295,926 + -1.8 295,926 + -1.0 295,926 + +1.4 295,926 + -1.0 295,927 - -0.5 295,927 - -2.0 295,927 - -1.8 295,927 - +3.4 295,927 - +0.8 295,927 - -2.1 295,927 - +2.1 295,929 + -1.3 295,929 + -1.8 295,929 + +0.1 295,929 + -0.2 295,929 + +1.1 295,929 + +0.1 295,929 + -1.5 295,929 + -1.5 295,929 + -1.7 295,929 + -0.3 295,929 + +0.8 295,929 + -2.3 295,929 + +1.2 295,929 + -0.3 295,929 + -0.0 295,929 + -0.0 295,929 + -2.9 295,929 + +1.1 295,929 + -0.4 295,929 + +0.5 295,929 + -0.8 295,929 + +1.1 295,929 + -0.8 295,930 - -0.8 295,930 - -2.4 295,930 - -0.5 295,930 - -3.4 295,930 - -0.4 295,930 - +3.4 295,930 - -2.2 295,930 - -1.7 295,930 - +0.1 295,930 - -0.9 295,930 - -0.8 295,930 - -1.7 295,930 - -1.2 295,930 - +0.7 295,930 - -0.3 295,930 - -0.0 295,930 - -0.3 295,930 - -0.5 295,930 - -0.5 295,930 - +0.1 295,930 - -0.7 295,930 - -0.2 295,930 - -0.7 295,930 - -0.2 295,930 - -0.5 295,930 - +1.1 295,930 - -1.5 295,930 - -2.4 295,930 - +0.6 295,930 - -3.7 295,930 - -1.2 295,983 + LRK53_RS01200 0.21 +0.2
Or see this region's nucleotide sequence