Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00655

Experiment: planktonic; Day4; SGW;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00645 and LRK53_RS00650 are separated by 206 nucleotidesLRK53_RS00650 and LRK53_RS00655 are separated by 84 nucleotidesLRK53_RS00655 and LRK53_RS00660 are separated by 84 nucleotidesLRK53_RS00660 and LRK53_RS00665 are separated by 145 nucleotides LRK53_RS00645: LRK53_RS00645 - GTP cyclohydrolase I FolE, at 146,620 to 147,243 _RS00645 LRK53_RS00650: LRK53_RS00650 - RNA polymerase sigma factor, at 147,450 to 148,154 _RS00650 LRK53_RS00655: LRK53_RS00655 - TlpA family protein disulfide reductase, at 148,239 to 149,051 _RS00655 LRK53_RS00660: LRK53_RS00660 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 149,136 to 149,771 _RS00660 LRK53_RS00665: LRK53_RS00665 - phosphogluconate dehydratase, at 149,917 to 151,734 _RS00665 Position (kb) 148 149 150Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 147.256 kb on - strandat 147.435 kb on + strandat 147.435 kb on + strandat 147.435 kb on + strandat 147.435 kb on + strandat 147.435 kb on + strandat 147.435 kb on + strandat 147.435 kb on + strandat 147.436 kb on - strandat 147.436 kb on - strandat 147.436 kb on - strandat 147.436 kb on - strandat 147.642 kb on + strand, within LRK53_RS00650at 147.642 kb on + strand, within LRK53_RS00650at 147.642 kb on + strand, within LRK53_RS00650at 147.642 kb on + strand, within LRK53_RS00650at 147.642 kb on + strand, within LRK53_RS00650at 147.642 kb on + strand, within LRK53_RS00650at 147.642 kb on + strand, within LRK53_RS00650at 147.642 kb on + strand, within LRK53_RS00650at 147.642 kb on + strand, within LRK53_RS00650at 147.642 kb on + strand, within LRK53_RS00650at 147.642 kb on + strand, within LRK53_RS00650at 147.642 kb on + strand, within LRK53_RS00650at 147.642 kb on + strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.643 kb on - strand, within LRK53_RS00650at 147.644 kb on + strand, within LRK53_RS00650at 147.644 kb on + strand, within LRK53_RS00650at 147.644 kb on + strand, within LRK53_RS00650at 147.644 kb on + strand, within LRK53_RS00650at 147.644 kb on + strand, within LRK53_RS00650at 147.644 kb on + strand, within LRK53_RS00650at 147.644 kb on + strand, within LRK53_RS00650at 147.644 kb on + strand, within LRK53_RS00650at 147.644 kb on + strand, within LRK53_RS00650at 147.644 kb on + strand, within LRK53_RS00650at 147.644 kb on + strand, within LRK53_RS00650at 147.644 kb on + strand, within LRK53_RS00650at 147.645 kb on - strand, within LRK53_RS00650at 147.645 kb on - strand, within LRK53_RS00650at 147.645 kb on - strand, within LRK53_RS00650at 147.645 kb on - strand, within LRK53_RS00650at 147.645 kb on - strand, within LRK53_RS00650at 147.645 kb on - strand, within LRK53_RS00650at 147.645 kb on - strand, within LRK53_RS00650at 147.645 kb on - strand, within LRK53_RS00650at 147.645 kb on - strand, within LRK53_RS00650at 147.645 kb on - strand, within LRK53_RS00650at 147.645 kb on - strand, within LRK53_RS00650at 147.645 kb on - strand, within LRK53_RS00650at 147.645 kb on - strand, within LRK53_RS00650at 147.645 kb on - strand, within LRK53_RS00650at 147.654 kb on + strand, within LRK53_RS00650at 147.654 kb on + strand, within LRK53_RS00650at 147.655 kb on - strand, within LRK53_RS00650at 147.655 kb on - strand, within LRK53_RS00650at 147.655 kb on - strand, within LRK53_RS00650at 147.924 kb on + strand, within LRK53_RS00650at 147.924 kb on + strand, within LRK53_RS00650at 147.924 kb on + strand, within LRK53_RS00650at 147.924 kb on + strand, within LRK53_RS00650at 147.924 kb on + strand, within LRK53_RS00650at 147.925 kb on - strand, within LRK53_RS00650at 147.925 kb on - strand, within LRK53_RS00650at 147.925 kb on - strand, within LRK53_RS00650at 147.925 kb on - strand, within LRK53_RS00650at 147.925 kb on - strand, within LRK53_RS00650at 147.925 kb on - strand, within LRK53_RS00650at 147.925 kb on - strand, within LRK53_RS00650at 147.925 kb on - strand, within LRK53_RS00650at 147.925 kb on - strand, within LRK53_RS00650at 148.011 kb on + strand, within LRK53_RS00650at 148.011 kb on + strand, within LRK53_RS00650at 148.163 kb on - strandat 148.163 kb on - strandat 148.163 kb on - strandat 148.163 kb on - strandat 148.372 kb on + strand, within LRK53_RS00655at 148.372 kb on + strand, within LRK53_RS00655at 148.372 kb on + strand, within LRK53_RS00655at 148.372 kb on + strand, within LRK53_RS00655at 148.372 kb on + strand, within LRK53_RS00655at 148.372 kb on + strand, within LRK53_RS00655at 148.372 kb on + strand, within LRK53_RS00655at 148.372 kb on + strand, within LRK53_RS00655at 148.372 kb on + strand, within LRK53_RS00655at 148.372 kb on + strand, within LRK53_RS00655at 148.372 kb on + strand, within LRK53_RS00655at 148.372 kb on + strand, within LRK53_RS00655at 148.372 kb on + strand, within LRK53_RS00655at 148.373 kb on - strand, within LRK53_RS00655at 148.373 kb on - strand, within LRK53_RS00655at 148.373 kb on - strand, within LRK53_RS00655at 148.373 kb on - strand, within LRK53_RS00655at 148.373 kb on - strand, within LRK53_RS00655at 148.373 kb on - strand, within LRK53_RS00655at 148.373 kb on - strand, within LRK53_RS00655at 148.373 kb on - strand, within LRK53_RS00655at 148.505 kb on + strand, within LRK53_RS00655at 148.505 kb on + strand, within LRK53_RS00655at 148.505 kb on + strand, within LRK53_RS00655at 148.505 kb on + strand, within LRK53_RS00655at 148.505 kb on + strand, within LRK53_RS00655at 148.505 kb on + strand, within LRK53_RS00655at 148.505 kb on + strand, within LRK53_RS00655at 148.505 kb on + strand, within LRK53_RS00655at 148.505 kb on + strand, within LRK53_RS00655at 148.505 kb on + strand, within LRK53_RS00655at 148.506 kb on - strand, within LRK53_RS00655at 148.506 kb on - strand, within LRK53_RS00655at 148.506 kb on - strand, within LRK53_RS00655at 148.506 kb on - strand, within LRK53_RS00655at 148.506 kb on - strand, within LRK53_RS00655at 148.506 kb on - strand, within LRK53_RS00655at 148.506 kb on - strand, within LRK53_RS00655at 148.678 kb on + strand, within LRK53_RS00655at 148.678 kb on + strand, within LRK53_RS00655at 148.678 kb on + strand, within LRK53_RS00655at 148.679 kb on - strand, within LRK53_RS00655at 148.679 kb on - strand, within LRK53_RS00655at 148.679 kb on - strand, within LRK53_RS00655at 148.679 kb on - strand, within LRK53_RS00655at 148.679 kb on - strand, within LRK53_RS00655at 148.679 kb on - strand, within LRK53_RS00655at 148.861 kb on + strand, within LRK53_RS00655at 148.861 kb on + strand, within LRK53_RS00655at 148.861 kb on + strand, within LRK53_RS00655at 148.861 kb on + strand, within LRK53_RS00655at 148.861 kb on + strand, within LRK53_RS00655at 148.862 kb on - strand, within LRK53_RS00655at 148.862 kb on - strand, within LRK53_RS00655at 148.862 kb on - strand, within LRK53_RS00655at 148.885 kb on + strand, within LRK53_RS00655at 148.885 kb on + strand, within LRK53_RS00655at 148.885 kb on + strand, within LRK53_RS00655at 148.886 kb on - strand, within LRK53_RS00655at 148.886 kb on - strand, within LRK53_RS00655at 148.886 kb on - strand, within LRK53_RS00655at 148.927 kb on + strand, within LRK53_RS00655at 148.927 kb on + strand, within LRK53_RS00655at 148.927 kb on + strand, within LRK53_RS00655at 148.927 kb on + strand, within LRK53_RS00655at 148.927 kb on + strand, within LRK53_RS00655at 148.927 kb on + strand, within LRK53_RS00655at 148.928 kb on - strand, within LRK53_RS00655at 148.928 kb on - strand, within LRK53_RS00655at 148.928 kb on - strand, within LRK53_RS00655at 148.928 kb on - strand, within LRK53_RS00655at 148.928 kb on - strand, within LRK53_RS00655at 148.928 kb on - strand, within LRK53_RS00655at 148.928 kb on - strand, within LRK53_RS00655at 149.112 kb on - strandat 149.859 kb on + strandat 149.859 kb on + strandat 149.859 kb on + strandat 149.860 kb on - strandat 149.860 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day4; SGW;
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147,256 - -0.9
147,435 + -0.2
147,435 + -1.5
147,435 + +0.9
147,435 + +1.0
147,435 + -1.4
147,435 + -0.3
147,435 + +0.5
147,436 - -1.3
147,436 - -1.5
147,436 - -1.4
147,436 - +0.8
147,642 + LRK53_RS00650 0.27 -2.0
147,642 + LRK53_RS00650 0.27 +0.1
147,642 + LRK53_RS00650 0.27 +1.3
147,642 + LRK53_RS00650 0.27 +1.1
147,642 + LRK53_RS00650 0.27 +0.3
147,642 + LRK53_RS00650 0.27 -1.2
147,642 + LRK53_RS00650 0.27 -1.8
147,642 + LRK53_RS00650 0.27 -0.2
147,642 + LRK53_RS00650 0.27 -0.0
147,642 + LRK53_RS00650 0.27 +2.5
147,642 + LRK53_RS00650 0.27 -0.5
147,642 + LRK53_RS00650 0.27 -0.9
147,642 + LRK53_RS00650 0.27 -0.4
147,643 - LRK53_RS00650 0.27 -0.7
147,643 - LRK53_RS00650 0.27 -0.8
147,643 - LRK53_RS00650 0.27 +1.0
147,643 - LRK53_RS00650 0.27 -1.4
147,643 - LRK53_RS00650 0.27 -0.2
147,643 - LRK53_RS00650 0.27 +1.1
147,643 - LRK53_RS00650 0.27 -1.8
147,643 - LRK53_RS00650 0.27 -0.5
147,643 - LRK53_RS00650 0.27 -0.2
147,643 - LRK53_RS00650 0.27 -1.3
147,643 - LRK53_RS00650 0.27 -1.6
147,643 - LRK53_RS00650 0.27 +0.3
147,643 - LRK53_RS00650 0.27 +0.1
147,643 - LRK53_RS00650 0.27 +0.1
147,643 - LRK53_RS00650 0.27 -0.1
147,643 - LRK53_RS00650 0.27 +0.5
147,643 - LRK53_RS00650 0.27 -2.8
147,643 - LRK53_RS00650 0.27 +0.6
147,643 - LRK53_RS00650 0.27 -2.0
147,643 - LRK53_RS00650 0.27 -2.0
147,643 - LRK53_RS00650 0.27 -2.3
147,643 - LRK53_RS00650 0.27 -0.5
147,643 - LRK53_RS00650 0.27 -0.5
147,644 + LRK53_RS00650 0.28 -1.2
147,644 + LRK53_RS00650 0.28 +0.5
147,644 + LRK53_RS00650 0.28 -0.2
147,644 + LRK53_RS00650 0.28 +1.5
147,644 + LRK53_RS00650 0.28 -0.0
147,644 + LRK53_RS00650 0.28 -2.2
147,644 + LRK53_RS00650 0.28 -1.4
147,644 + LRK53_RS00650 0.28 -0.9
147,644 + LRK53_RS00650 0.28 -0.1
147,644 + LRK53_RS00650 0.28 +0.3
147,644 + LRK53_RS00650 0.28 -1.1
147,644 + LRK53_RS00650 0.28 -1.4
147,645 - LRK53_RS00650 0.28 -0.1
147,645 - LRK53_RS00650 0.28 +0.1
147,645 - LRK53_RS00650 0.28 -0.9
147,645 - LRK53_RS00650 0.28 -0.6
147,645 - LRK53_RS00650 0.28 +0.3
147,645 - LRK53_RS00650 0.28 -0.0
147,645 - LRK53_RS00650 0.28 -0.0
147,645 - LRK53_RS00650 0.28 -1.2
147,645 - LRK53_RS00650 0.28 +0.7
147,645 - LRK53_RS00650 0.28 +0.9
147,645 - LRK53_RS00650 0.28 +0.3
147,645 - LRK53_RS00650 0.28 -0.4
147,645 - LRK53_RS00650 0.28 -2.0
147,645 - LRK53_RS00650 0.28 +0.5
147,654 + LRK53_RS00650 0.29 -0.8
147,654 + LRK53_RS00650 0.29 +0.8
147,655 - LRK53_RS00650 0.29 +0.8
147,655 - LRK53_RS00650 0.29 +0.1
147,655 - LRK53_RS00650 0.29 +0.5
147,924 + LRK53_RS00650 0.67 +0.1
147,924 + LRK53_RS00650 0.67 -0.4
147,924 + LRK53_RS00650 0.67 +1.5
147,924 + LRK53_RS00650 0.67 -0.0
147,924 + LRK53_RS00650 0.67 -0.5
147,925 - LRK53_RS00650 0.67 -0.6
147,925 - LRK53_RS00650 0.67 +0.1
147,925 - LRK53_RS00650 0.67 +0.5
147,925 - LRK53_RS00650 0.67 -0.7
147,925 - LRK53_RS00650 0.67 -0.1
147,925 - LRK53_RS00650 0.67 -0.3
147,925 - LRK53_RS00650 0.67 +0.3
147,925 - LRK53_RS00650 0.67 +0.5
147,925 - LRK53_RS00650 0.67 -0.7
148,011 + LRK53_RS00650 0.80 -0.4
148,011 + LRK53_RS00650 0.80 -2.0
148,163 - -1.7
148,163 - -1.0
148,163 - -1.8
148,163 - +0.6
148,372 + LRK53_RS00655 0.16 -0.7
148,372 + LRK53_RS00655 0.16 -0.0
148,372 + LRK53_RS00655 0.16 +2.0
148,372 + LRK53_RS00655 0.16 -1.8
148,372 + LRK53_RS00655 0.16 -0.2
148,372 + LRK53_RS00655 0.16 -2.3
148,372 + LRK53_RS00655 0.16 -0.3
148,372 + LRK53_RS00655 0.16 +1.1
148,372 + LRK53_RS00655 0.16 -1.2
148,372 + LRK53_RS00655 0.16 +0.7
148,372 + LRK53_RS00655 0.16 -1.6
148,372 + LRK53_RS00655 0.16 +0.4
148,372 + LRK53_RS00655 0.16 -1.3
148,373 - LRK53_RS00655 0.16 -1.6
148,373 - LRK53_RS00655 0.16 -0.8
148,373 - LRK53_RS00655 0.16 -1.9
148,373 - LRK53_RS00655 0.16 -0.7
148,373 - LRK53_RS00655 0.16 -1.3
148,373 - LRK53_RS00655 0.16 +0.3
148,373 - LRK53_RS00655 0.16 -1.9
148,373 - LRK53_RS00655 0.16 -1.2
148,505 + LRK53_RS00655 0.33 +0.3
148,505 + LRK53_RS00655 0.33 +0.5
148,505 + LRK53_RS00655 0.33 -0.1
148,505 + LRK53_RS00655 0.33 +0.3
148,505 + LRK53_RS00655 0.33 +1.3
148,505 + LRK53_RS00655 0.33 -1.9
148,505 + LRK53_RS00655 0.33 -0.4
148,505 + LRK53_RS00655 0.33 -2.0
148,505 + LRK53_RS00655 0.33 -1.8
148,505 + LRK53_RS00655 0.33 -0.6
148,506 - LRK53_RS00655 0.33 -0.5
148,506 - LRK53_RS00655 0.33 -0.5
148,506 - LRK53_RS00655 0.33 -2.6
148,506 - LRK53_RS00655 0.33 +0.3
148,506 - LRK53_RS00655 0.33 -0.9
148,506 - LRK53_RS00655 0.33 -0.2
148,506 - LRK53_RS00655 0.33 -0.4
148,678 + LRK53_RS00655 0.54 +0.1
148,678 + LRK53_RS00655 0.54 -0.8
148,678 + LRK53_RS00655 0.54 -1.2
148,679 - LRK53_RS00655 0.54 +1.9
148,679 - LRK53_RS00655 0.54 -0.1
148,679 - LRK53_RS00655 0.54 -0.4
148,679 - LRK53_RS00655 0.54 -0.5
148,679 - LRK53_RS00655 0.54 +0.1
148,679 - LRK53_RS00655 0.54 +0.3
148,861 + LRK53_RS00655 0.77 -0.2
148,861 + LRK53_RS00655 0.77 +0.1
148,861 + LRK53_RS00655 0.77 +1.0
148,861 + LRK53_RS00655 0.77 -1.8
148,861 + LRK53_RS00655 0.77 -0.7
148,862 - LRK53_RS00655 0.77 -0.5
148,862 - LRK53_RS00655 0.77 +0.6
148,862 - LRK53_RS00655 0.77 +1.7
148,885 + LRK53_RS00655 0.79 -1.2
148,885 + LRK53_RS00655 0.79 +0.5
148,885 + LRK53_RS00655 0.79 -0.4
148,886 - LRK53_RS00655 0.80 -0.5
148,886 - LRK53_RS00655 0.80 +0.6
148,886 - LRK53_RS00655 0.80 -0.5
148,927 + LRK53_RS00655 0.85 +1.9
148,927 + LRK53_RS00655 0.85 -0.5
148,927 + LRK53_RS00655 0.85 +0.6
148,927 + LRK53_RS00655 0.85 +0.5
148,927 + LRK53_RS00655 0.85 +0.4
148,927 + LRK53_RS00655 0.85 -1.5
148,928 - LRK53_RS00655 0.85 +1.0
148,928 - LRK53_RS00655 0.85 -0.3
148,928 - LRK53_RS00655 0.85 +0.2
148,928 - LRK53_RS00655 0.85 -2.5
148,928 - LRK53_RS00655 0.85 -1.8
148,928 - LRK53_RS00655 0.85 -0.9
148,928 - LRK53_RS00655 0.85 +1.5
149,112 - -1.8
149,859 + +0.5
149,859 + -0.8
149,859 + -0.0
149,860 - -0.7
149,860 - +1.6

Or see this region's nucleotide sequence