Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00570

Experiment: planktonic; Day4; SGW;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00565 and LRK53_RS00570 are separated by 281 nucleotidesLRK53_RS00570 and LRK53_RS00575 are separated by 105 nucleotides LRK53_RS00565: LRK53_RS00565 - ATP-binding protein, at 125,334 to 126,344 _RS00565 LRK53_RS00570: LRK53_RS00570 - nitrogen regulation protein NR(I), at 126,626 to 128,005 _RS00570 LRK53_RS00575: LRK53_RS00575 - glycosyl transferase family 36, at 128,111 to 131,980 _RS00575 Position (kb) 126 127 128 129Strain fitness (log2 ratio) -2 -1 0 1 2 3at 125.964 kb on + strand, within LRK53_RS00565at 125.964 kb on + strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565at 125.965 kb on - strand, within LRK53_RS00565at 126.315 kb on + strandat 126.315 kb on + strandat 126.315 kb on + strandat 126.316 kb on - strandat 126.316 kb on - strandat 126.316 kb on - strandat 126.316 kb on - strandat 126.316 kb on - strandat 126.512 kb on + strandat 126.512 kb on + strandat 126.512 kb on + strandat 126.512 kb on + strandat 126.512 kb on + strandat 126.513 kb on - strandat 126.513 kb on - strandat 126.513 kb on - strandat 126.513 kb on - strandat 126.513 kb on - strandat 126.513 kb on - strandat 126.513 kb on - strandat 126.516 kb on + strandat 126.517 kb on - strandat 126.517 kb on - strandat 126.517 kb on - strandat 126.869 kb on + strand, within LRK53_RS00570at 126.869 kb on + strand, within LRK53_RS00570at 126.869 kb on + strand, within LRK53_RS00570at 126.869 kb on + strand, within LRK53_RS00570at 126.869 kb on + strand, within LRK53_RS00570at 126.869 kb on + strand, within LRK53_RS00570at 126.869 kb on + strand, within LRK53_RS00570at 126.869 kb on + strand, within LRK53_RS00570at 126.870 kb on - strand, within LRK53_RS00570at 126.870 kb on - strand, within LRK53_RS00570at 126.870 kb on - strand, within LRK53_RS00570at 126.870 kb on - strand, within LRK53_RS00570at 126.870 kb on - strand, within LRK53_RS00570at 126.870 kb on - strand, within LRK53_RS00570at 126.870 kb on - strand, within LRK53_RS00570at 126.870 kb on - strand, within LRK53_RS00570at 126.870 kb on - strand, within LRK53_RS00570at 126.870 kb on - strand, within LRK53_RS00570at 126.900 kb on - strand, within LRK53_RS00570at 126.920 kb on + strand, within LRK53_RS00570at 126.920 kb on + strand, within LRK53_RS00570at 126.921 kb on - strand, within LRK53_RS00570at 126.921 kb on - strand, within LRK53_RS00570at 126.921 kb on - strand, within LRK53_RS00570at 127.400 kb on + strand, within LRK53_RS00570at 127.401 kb on - strand, within LRK53_RS00570at 127.401 kb on - strand, within LRK53_RS00570at 127.673 kb on + strand, within LRK53_RS00570at 127.735 kb on + strand, within LRK53_RS00570at 127.735 kb on + strand, within LRK53_RS00570at 127.736 kb on - strand, within LRK53_RS00570at 127.960 kb on + strandat 127.960 kb on + strandat 127.960 kb on + strandat 127.960 kb on + strandat 127.960 kb on + strandat 127.960 kb on + strandat 127.960 kb on + strandat 127.961 kb on - strandat 127.961 kb on - strandat 128.112 kb on + strandat 128.183 kb on + strandat 128.183 kb on + strandat 128.183 kb on + strandat 128.183 kb on + strandat 128.183 kb on + strandat 128.184 kb on - strandat 128.256 kb on + strandat 128.391 kb on + strandat 128.415 kb on + strandat 128.416 kb on - strandat 128.416 kb on - strandat 128.416 kb on - strandat 128.416 kb on - strandat 128.416 kb on - strandat 128.416 kb on - strandat 128.416 kb on - strandat 128.457 kb on + strandat 128.478 kb on + strandat 128.478 kb on + strandat 128.478 kb on + strandat 128.478 kb on + strandat 128.478 kb on + strandat 128.478 kb on + strandat 128.478 kb on + strandat 128.478 kb on + strandat 128.479 kb on - strandat 128.479 kb on - strandat 128.479 kb on - strandat 128.479 kb on - strandat 128.494 kb on - strandat 128.619 kb on + strand, within LRK53_RS00575at 128.619 kb on + strand, within LRK53_RS00575at 128.619 kb on + strand, within LRK53_RS00575at 128.620 kb on - strand, within LRK53_RS00575at 128.620 kb on - strand, within LRK53_RS00575at 128.620 kb on - strand, within LRK53_RS00575at 128.662 kb on + strand, within LRK53_RS00575at 128.662 kb on + strand, within LRK53_RS00575at 128.662 kb on + strand, within LRK53_RS00575at 128.662 kb on + strand, within LRK53_RS00575at 128.662 kb on + strand, within LRK53_RS00575at 128.662 kb on + strand, within LRK53_RS00575at 128.662 kb on + strand, within LRK53_RS00575at 128.662 kb on + strand, within LRK53_RS00575at 128.662 kb on + strand, within LRK53_RS00575at 128.662 kb on + strand, within LRK53_RS00575at 128.663 kb on - strand, within LRK53_RS00575at 128.663 kb on - strand, within LRK53_RS00575at 128.663 kb on - strand, within LRK53_RS00575at 128.664 kb on + strand, within LRK53_RS00575at 128.664 kb on + strand, within LRK53_RS00575at 128.664 kb on + strand, within LRK53_RS00575at 128.664 kb on + strand, within LRK53_RS00575at 128.664 kb on + strand, within LRK53_RS00575at 128.664 kb on + strand, within LRK53_RS00575at 128.664 kb on + strand, within LRK53_RS00575at 128.665 kb on - strand, within LRK53_RS00575at 128.874 kb on + strand, within LRK53_RS00575

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day4; SGW;
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125,964 + LRK53_RS00565 0.62 +0.4
125,964 + LRK53_RS00565 0.62 +0.5
125,965 - LRK53_RS00565 0.62 +0.9
125,965 - LRK53_RS00565 0.62 +0.6
125,965 - LRK53_RS00565 0.62 -1.5
125,965 - LRK53_RS00565 0.62 +2.9
125,965 - LRK53_RS00565 0.62 -0.2
125,965 - LRK53_RS00565 0.62 +0.2
125,965 - LRK53_RS00565 0.62 -0.8
126,315 + -2.3
126,315 + -1.1
126,315 + -1.5
126,316 - -0.7
126,316 - +1.6
126,316 - +0.4
126,316 - +0.1
126,316 - +0.4
126,512 + +1.1
126,512 + +1.1
126,512 + +1.0
126,512 + -0.7
126,512 + +0.4
126,513 - -1.6
126,513 - -0.6
126,513 - +0.3
126,513 - -2.3
126,513 - +0.8
126,513 - +0.4
126,513 - -0.6
126,516 + -2.2
126,517 - -1.4
126,517 - -1.1
126,517 - -0.3
126,869 + LRK53_RS00570 0.18 +1.3
126,869 + LRK53_RS00570 0.18 -0.5
126,869 + LRK53_RS00570 0.18 -1.1
126,869 + LRK53_RS00570 0.18 -0.4
126,869 + LRK53_RS00570 0.18 +0.1
126,869 + LRK53_RS00570 0.18 -1.6
126,869 + LRK53_RS00570 0.18 -0.4
126,869 + LRK53_RS00570 0.18 +0.3
126,870 - LRK53_RS00570 0.18 +0.9
126,870 - LRK53_RS00570 0.18 +0.3
126,870 - LRK53_RS00570 0.18 +0.6
126,870 - LRK53_RS00570 0.18 -0.7
126,870 - LRK53_RS00570 0.18 +0.6
126,870 - LRK53_RS00570 0.18 -0.6
126,870 - LRK53_RS00570 0.18 +0.3
126,870 - LRK53_RS00570 0.18 -1.3
126,870 - LRK53_RS00570 0.18 -0.0
126,870 - LRK53_RS00570 0.18 +0.5
126,900 - LRK53_RS00570 0.20 -1.1
126,920 + LRK53_RS00570 0.21 +1.4
126,920 + LRK53_RS00570 0.21 +0.1
126,921 - LRK53_RS00570 0.21 -0.0
126,921 - LRK53_RS00570 0.21 +0.6
126,921 - LRK53_RS00570 0.21 +0.5
127,400 + LRK53_RS00570 0.56 -0.3
127,401 - LRK53_RS00570 0.56 -0.6
127,401 - LRK53_RS00570 0.56 -0.3
127,673 + LRK53_RS00570 0.76 -0.4
127,735 + LRK53_RS00570 0.80 -0.7
127,735 + LRK53_RS00570 0.80 +0.5
127,736 - LRK53_RS00570 0.80 -0.3
127,960 + +0.4
127,960 + -0.2
127,960 + +0.8
127,960 + -0.0
127,960 + -1.7
127,960 + -1.6
127,960 + -0.1
127,961 - +1.2
127,961 - -0.0
128,112 + +0.6
128,183 + +0.0
128,183 + -2.0
128,183 + +1.5
128,183 + +0.3
128,183 + -0.9
128,184 - -0.5
128,256 + +0.3
128,391 + -0.4
128,415 + -0.5
128,416 - +1.2
128,416 - -2.5
128,416 - -1.3
128,416 - -0.4
128,416 - -0.0
128,416 - +0.3
128,416 - -2.0
128,457 + -0.4
128,478 + +1.1
128,478 + +0.3
128,478 + -1.5
128,478 + -1.9
128,478 + -1.2
128,478 + +0.4
128,478 + -0.0
128,478 + +0.4
128,479 - +0.1
128,479 - -0.6
128,479 - -0.8
128,479 - -0.6
128,494 - -1.5
128,619 + LRK53_RS00575 0.13 -1.0
128,619 + LRK53_RS00575 0.13 +0.3
128,619 + LRK53_RS00575 0.13 -1.1
128,620 - LRK53_RS00575 0.13 +0.4
128,620 - LRK53_RS00575 0.13 +0.3
128,620 - LRK53_RS00575 0.13 +0.4
128,662 + LRK53_RS00575 0.14 -0.1
128,662 + LRK53_RS00575 0.14 -0.3
128,662 + LRK53_RS00575 0.14 -0.1
128,662 + LRK53_RS00575 0.14 +0.1
128,662 + LRK53_RS00575 0.14 +0.1
128,662 + LRK53_RS00575 0.14 -1.0
128,662 + LRK53_RS00575 0.14 +0.1
128,662 + LRK53_RS00575 0.14 -1.5
128,662 + LRK53_RS00575 0.14 -1.8
128,662 + LRK53_RS00575 0.14 -0.2
128,663 - LRK53_RS00575 0.14 +0.1
128,663 - LRK53_RS00575 0.14 -0.8
128,663 - LRK53_RS00575 0.14 +0.3
128,664 + LRK53_RS00575 0.14 +1.4
128,664 + LRK53_RS00575 0.14 +0.1
128,664 + LRK53_RS00575 0.14 -1.4
128,664 + LRK53_RS00575 0.14 -1.1
128,664 + LRK53_RS00575 0.14 +0.4
128,664 + LRK53_RS00575 0.14 +0.9
128,664 + LRK53_RS00575 0.14 -0.3
128,665 - LRK53_RS00575 0.14 +1.5
128,874 + LRK53_RS00575 0.20 -1.4

Or see this region's nucleotide sequence