Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00540 and LRK53_RS00545 are separated by 7 nucleotides LRK53_RS00545 and LRK53_RS00550 are separated by 416 nucleotides
LRK53_RS00540: LRK53_RS00540 - nucleotidyltransferase family protein, at 118,423 to 119,667
_RS00540
LRK53_RS00545: LRK53_RS00545 - B12-binding domain-containing radical SAM protein, at 119,675 to 121,150
_RS00545
LRK53_RS00550: LRK53_RS00550 - serine kinase, at 121,567 to 122,589
_RS00550
Position (kb)
119
120
121
122 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 119.066 kb on + strand, within LRK53_RS00540 at 119.066 kb on + strand, within LRK53_RS00540 at 119.066 kb on + strand, within LRK53_RS00540 at 119.066 kb on + strand, within LRK53_RS00540 at 119.067 kb on - strand, within LRK53_RS00540 at 119.067 kb on - strand, within LRK53_RS00540 at 119.067 kb on - strand, within LRK53_RS00540 at 119.067 kb on - strand, within LRK53_RS00540 at 119.067 kb on - strand, within LRK53_RS00540 at 119.324 kb on + strand, within LRK53_RS00540 at 119.324 kb on + strand, within LRK53_RS00540 at 119.324 kb on + strand, within LRK53_RS00540 at 119.325 kb on - strand, within LRK53_RS00540 at 119.325 kb on - strand, within LRK53_RS00540 at 119.325 kb on - strand, within LRK53_RS00540 at 119.325 kb on - strand, within LRK53_RS00540 at 119.325 kb on - strand, within LRK53_RS00540 at 119.325 kb on - strand, within LRK53_RS00540 at 119.325 kb on - strand, within LRK53_RS00540 at 119.679 kb on + strand at 119.679 kb on + strand at 119.679 kb on + strand at 119.679 kb on + strand at 119.868 kb on + strand, within LRK53_RS00545 at 119.868 kb on + strand, within LRK53_RS00545 at 119.869 kb on - strand, within LRK53_RS00545 at 119.869 kb on - strand, within LRK53_RS00545 at 119.883 kb on + strand, within LRK53_RS00545 at 119.883 kb on + strand, within LRK53_RS00545 at 119.965 kb on - strand, within LRK53_RS00545 at 120.408 kb on + strand, within LRK53_RS00545 at 120.408 kb on + strand, within LRK53_RS00545 at 120.408 kb on + strand, within LRK53_RS00545 at 120.409 kb on - strand, within LRK53_RS00545 at 120.409 kb on - strand, within LRK53_RS00545 at 120.450 kb on + strand, within LRK53_RS00545 at 120.450 kb on + strand, within LRK53_RS00545 at 120.450 kb on + strand, within LRK53_RS00545 at 120.450 kb on + strand, within LRK53_RS00545 at 120.450 kb on + strand, within LRK53_RS00545 at 120.450 kb on + strand, within LRK53_RS00545 at 120.450 kb on + strand, within LRK53_RS00545 at 120.450 kb on + strand, within LRK53_RS00545 at 120.450 kb on + strand, within LRK53_RS00545 at 120.450 kb on + strand, within LRK53_RS00545 at 120.451 kb on - strand, within LRK53_RS00545 at 120.451 kb on - strand, within LRK53_RS00545 at 120.451 kb on - strand, within LRK53_RS00545 at 120.531 kb on + strand, within LRK53_RS00545 at 120.531 kb on + strand, within LRK53_RS00545 at 120.532 kb on - strand, within LRK53_RS00545 at 120.532 kb on - strand, within LRK53_RS00545 at 120.561 kb on + strand, within LRK53_RS00545 at 120.933 kb on + strand, within LRK53_RS00545 at 120.933 kb on + strand, within LRK53_RS00545 at 120.933 kb on + strand, within LRK53_RS00545 at 120.934 kb on - strand, within LRK53_RS00545 at 120.934 kb on - strand, within LRK53_RS00545 at 121.122 kb on + strand at 121.122 kb on + strand at 121.122 kb on + strand at 121.122 kb on + strand at 121.122 kb on + strand at 121.122 kb on + strand at 121.122 kb on + strand at 121.123 kb on - strand at 121.123 kb on - strand at 121.123 kb on - strand at 121.123 kb on - strand at 121.123 kb on - strand at 121.123 kb on - strand at 121.216 kb on + strand at 121.216 kb on + strand at 121.216 kb on + strand at 121.216 kb on + strand at 121.217 kb on - strand at 121.217 kb on - strand at 121.217 kb on - strand at 121.217 kb on - strand at 121.217 kb on - strand at 121.217 kb on - strand at 121.217 kb on - strand at 121.440 kb on + strand at 121.440 kb on + strand at 121.440 kb on + strand at 121.440 kb on + strand at 121.440 kb on + strand at 121.441 kb on - strand at 121.441 kb on - strand at 121.441 kb on - strand at 121.458 kb on - strand at 121.469 kb on + strand at 121.469 kb on + strand at 121.469 kb on + strand at 121.470 kb on - strand at 121.522 kb on + strand at 121.522 kb on + strand at 121.522 kb on + strand at 121.522 kb on + strand at 121.522 kb on + strand at 121.522 kb on + strand at 121.523 kb on - strand at 121.523 kb on - strand at 121.523 kb on - strand at 121.523 kb on - strand at 121.523 kb on - strand at 121.523 kb on - strand at 121.523 kb on - strand at 121.724 kb on - strand, within LRK53_RS00550 at 121.885 kb on + strand, within LRK53_RS00550 at 121.885 kb on + strand, within LRK53_RS00550 at 121.885 kb on + strand, within LRK53_RS00550 at 121.885 kb on + strand, within LRK53_RS00550 at 121.885 kb on + strand, within LRK53_RS00550 at 121.885 kb on + strand, within LRK53_RS00550 at 121.885 kb on + strand, within LRK53_RS00550 at 121.885 kb on + strand, within LRK53_RS00550 at 121.885 kb on + strand, within LRK53_RS00550 at 121.886 kb on - strand, within LRK53_RS00550 at 121.886 kb on - strand, within LRK53_RS00550 at 121.955 kb on - strand, within LRK53_RS00550
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 119,066 + LRK53_RS00540 0.52 +2.6 119,066 + LRK53_RS00540 0.52 +0.6 119,066 + LRK53_RS00540 0.52 +0.3 119,066 + LRK53_RS00540 0.52 -0.6 119,067 - LRK53_RS00540 0.52 +0.6 119,067 - LRK53_RS00540 0.52 -2.9 119,067 - LRK53_RS00540 0.52 +0.3 119,067 - LRK53_RS00540 0.52 -0.6 119,067 - LRK53_RS00540 0.52 -1.4 119,324 + LRK53_RS00540 0.72 -1.3 119,324 + LRK53_RS00540 0.72 -1.3 119,324 + LRK53_RS00540 0.72 -0.8 119,325 - LRK53_RS00540 0.72 -0.7 119,325 - LRK53_RS00540 0.72 -0.4 119,325 - LRK53_RS00540 0.72 +0.9 119,325 - LRK53_RS00540 0.72 -2.1 119,325 - LRK53_RS00540 0.72 +0.4 119,325 - LRK53_RS00540 0.72 +1.3 119,325 - LRK53_RS00540 0.72 +1.3 119,679 + +0.3 119,679 + -0.5 119,679 + +0.5 119,679 + -0.1 119,868 + LRK53_RS00545 0.13 +0.4 119,868 + LRK53_RS00545 0.13 +0.9 119,869 - LRK53_RS00545 0.13 -1.6 119,869 - LRK53_RS00545 0.13 -0.0 119,883 + LRK53_RS00545 0.14 +0.3 119,883 + LRK53_RS00545 0.14 -1.2 119,965 - LRK53_RS00545 0.20 -0.9 120,408 + LRK53_RS00545 0.50 -2.2 120,408 + LRK53_RS00545 0.50 -0.6 120,408 + LRK53_RS00545 0.50 -1.6 120,409 - LRK53_RS00545 0.50 -0.9 120,409 - LRK53_RS00545 0.50 -2.9 120,450 + LRK53_RS00545 0.53 -1.4 120,450 + LRK53_RS00545 0.53 -0.0 120,450 + LRK53_RS00545 0.53 +0.6 120,450 + LRK53_RS00545 0.53 +2.0 120,450 + LRK53_RS00545 0.53 +0.6 120,450 + LRK53_RS00545 0.53 +0.9 120,450 + LRK53_RS00545 0.53 -1.4 120,450 + LRK53_RS00545 0.53 -1.1 120,450 + LRK53_RS00545 0.53 -0.3 120,450 + LRK53_RS00545 0.53 -1.9 120,451 - LRK53_RS00545 0.53 -0.0 120,451 - LRK53_RS00545 0.53 -0.3 120,451 - LRK53_RS00545 0.53 +0.1 120,531 + LRK53_RS00545 0.58 -1.8 120,531 + LRK53_RS00545 0.58 +0.1 120,532 - LRK53_RS00545 0.58 +0.1 120,532 - LRK53_RS00545 0.58 -1.1 120,561 + LRK53_RS00545 0.60 +0.4 120,933 + LRK53_RS00545 0.85 -0.3 120,933 + LRK53_RS00545 0.85 -1.1 120,933 + LRK53_RS00545 0.85 +1.4 120,934 - LRK53_RS00545 0.85 -0.7 120,934 - LRK53_RS00545 0.85 +0.1 121,122 + +0.1 121,122 + -0.3 121,122 + -1.2 121,122 + -1.0 121,122 + -0.7 121,122 + +0.6 121,122 + -1.3 121,123 - -1.8 121,123 - +0.8 121,123 - -1.3 121,123 - -1.8 121,123 - +0.6 121,123 - -1.4 121,216 + -0.3 121,216 + +0.9 121,216 + +0.6 121,216 + +1.1 121,217 - +1.6 121,217 - -0.4 121,217 - +0.7 121,217 - -2.3 121,217 - -0.9 121,217 - +3.4 121,217 - -0.9 121,440 + -1.2 121,440 + -0.9 121,440 + -0.9 121,440 + -0.4 121,440 + +0.9 121,441 - -2.4 121,441 - -0.1 121,441 - -0.1 121,458 - -0.6 121,469 + -0.6 121,469 + +0.7 121,469 + +0.7 121,470 - +0.3 121,522 + +0.3 121,522 + +0.6 121,522 + +0.4 121,522 + -0.7 121,522 + +0.3 121,522 + -0.9 121,523 - -0.8 121,523 - -1.5 121,523 - -0.8 121,523 - +0.3 121,523 - -0.9 121,523 - +0.5 121,523 - +1.9 121,724 - LRK53_RS00550 0.15 -0.9 121,885 + LRK53_RS00550 0.31 -1.3 121,885 + LRK53_RS00550 0.31 +0.5 121,885 + LRK53_RS00550 0.31 -0.3 121,885 + LRK53_RS00550 0.31 -1.2 121,885 + LRK53_RS00550 0.31 +0.3 121,885 + LRK53_RS00550 0.31 -0.1 121,885 + LRK53_RS00550 0.31 +1.9 121,885 + LRK53_RS00550 0.31 -1.2 121,885 + LRK53_RS00550 0.31 -0.7 121,886 - LRK53_RS00550 0.31 +0.4 121,886 - LRK53_RS00550 0.31 -0.6 121,955 - LRK53_RS00550 0.38 -1.3
Or see this region's nucleotide sequence