Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00525 and LRK53_RS00530 are separated by 213 nucleotides LRK53_RS00530 and LRK53_RS00535 are separated by 129 nucleotides
LRK53_RS00525: LRK53_RS00525 - glycosyltransferase family 4 protein, at 115,004 to 116,110
_RS00525
LRK53_RS00530: LRK53_RS00530 - alpha/beta fold hydrolase, at 116,324 to 117,271
_RS00530
LRK53_RS00535: LRK53_RS00535 - CHAD domain-containing protein, at 117,401 to 118,198
_RS00535
Position (kb)
116
117
118 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 115.377 kb on - strand, within LRK53_RS00525 at 115.872 kb on + strand, within LRK53_RS00525 at 115.872 kb on + strand, within LRK53_RS00525 at 116.081 kb on + strand at 116.081 kb on + strand at 116.081 kb on + strand at 116.081 kb on + strand at 116.081 kb on + strand at 116.081 kb on + strand at 116.081 kb on + strand at 116.081 kb on + strand at 116.081 kb on + strand at 116.081 kb on + strand at 116.082 kb on - strand at 116.082 kb on - strand at 116.082 kb on - strand at 116.082 kb on - strand at 116.082 kb on - strand at 116.082 kb on - strand at 116.082 kb on - strand at 116.082 kb on - strand at 116.082 kb on - strand at 116.082 kb on - strand at 116.082 kb on - strand at 116.082 kb on - strand at 116.082 kb on - strand at 116.082 kb on - strand at 116.082 kb on - strand at 116.082 kb on - strand at 116.115 kb on + strand at 116.115 kb on + strand at 116.115 kb on + strand at 116.115 kb on + strand at 116.115 kb on + strand at 116.116 kb on - strand at 116.116 kb on - strand at 116.116 kb on - strand at 116.116 kb on - strand at 116.116 kb on - strand at 116.126 kb on + strand at 116.126 kb on + strand at 116.126 kb on + strand at 116.126 kb on + strand at 116.126 kb on + strand at 116.126 kb on + strand at 116.127 kb on - strand at 116.127 kb on - strand at 116.127 kb on - strand at 116.127 kb on - strand at 116.127 kb on - strand at 116.127 kb on - strand at 116.158 kb on - strand at 116.235 kb on + strand at 116.236 kb on - strand at 116.241 kb on + strand at 116.247 kb on + strand at 116.247 kb on + strand at 116.247 kb on + strand at 116.247 kb on + strand at 116.247 kb on + strand at 116.248 kb on - strand at 116.248 kb on - strand at 116.248 kb on - strand at 116.248 kb on - strand at 116.248 kb on - strand at 116.248 kb on - strand at 116.248 kb on - strand at 116.248 kb on - strand at 116.248 kb on - strand at 116.248 kb on - strand at 116.261 kb on + strand at 116.262 kb on - strand at 116.292 kb on + strand at 116.292 kb on + strand at 116.292 kb on + strand at 116.292 kb on + strand at 116.292 kb on + strand at 116.292 kb on + strand at 116.292 kb on + strand at 116.292 kb on + strand at 116.292 kb on + strand at 116.292 kb on + strand at 116.292 kb on + strand at 116.293 kb on - strand at 116.293 kb on - strand at 116.293 kb on - strand at 116.293 kb on - strand at 116.293 kb on - strand at 116.293 kb on - strand at 116.293 kb on - strand at 116.293 kb on - strand at 116.293 kb on - strand at 116.293 kb on - strand at 116.293 kb on - strand at 116.293 kb on - strand at 116.293 kb on - strand at 116.293 kb on - strand at 116.293 kb on - strand at 116.317 kb on + strand at 116.318 kb on - strand at 116.318 kb on - strand at 116.523 kb on + strand, within LRK53_RS00530 at 116.523 kb on + strand, within LRK53_RS00530 at 116.523 kb on + strand, within LRK53_RS00530 at 116.523 kb on + strand, within LRK53_RS00530 at 116.524 kb on - strand, within LRK53_RS00530 at 116.524 kb on - strand, within LRK53_RS00530 at 116.754 kb on + strand, within LRK53_RS00530 at 116.754 kb on + strand, within LRK53_RS00530 at 116.755 kb on - strand, within LRK53_RS00530 at 116.829 kb on + strand, within LRK53_RS00530 at 116.830 kb on - strand, within LRK53_RS00530 at 116.830 kb on - strand, within LRK53_RS00530 at 116.830 kb on - strand, within LRK53_RS00530 at 116.841 kb on + strand, within LRK53_RS00530 at 116.841 kb on + strand, within LRK53_RS00530 at 116.841 kb on + strand, within LRK53_RS00530 at 116.842 kb on - strand, within LRK53_RS00530 at 116.847 kb on + strand, within LRK53_RS00530 at 116.847 kb on + strand, within LRK53_RS00530 at 116.847 kb on + strand, within LRK53_RS00530 at 116.848 kb on - strand, within LRK53_RS00530 at 116.848 kb on - strand, within LRK53_RS00530 at 116.848 kb on - strand, within LRK53_RS00530 at 116.848 kb on - strand, within LRK53_RS00530 at 116.848 kb on - strand, within LRK53_RS00530 at 117.084 kb on + strand, within LRK53_RS00530 at 117.084 kb on + strand, within LRK53_RS00530 at 117.102 kb on + strand, within LRK53_RS00530 at 117.102 kb on + strand, within LRK53_RS00530 at 117.102 kb on + strand, within LRK53_RS00530 at 117.103 kb on - strand, within LRK53_RS00530 at 117.103 kb on - strand, within LRK53_RS00530 at 117.120 kb on + strand, within LRK53_RS00530 at 117.120 kb on + strand, within LRK53_RS00530 at 117.120 kb on + strand, within LRK53_RS00530 at 117.120 kb on + strand, within LRK53_RS00530 at 117.120 kb on + strand, within LRK53_RS00530 at 117.121 kb on - strand, within LRK53_RS00530 at 117.121 kb on - strand, within LRK53_RS00530 at 117.121 kb on - strand, within LRK53_RS00530 at 117.121 kb on - strand, within LRK53_RS00530 at 117.121 kb on - strand, within LRK53_RS00530 at 117.121 kb on - strand, within LRK53_RS00530 at 117.121 kb on - strand, within LRK53_RS00530 at 117.121 kb on - strand, within LRK53_RS00530 at 117.121 kb on - strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.339 kb on + strand at 117.339 kb on + strand at 117.339 kb on + strand at 117.340 kb on - strand at 117.340 kb on - strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.372 kb on - strand at 117.372 kb on - strand at 117.372 kb on - strand at 117.372 kb on - strand at 117.372 kb on - strand at 117.479 kb on + strand at 117.479 kb on + strand at 117.662 kb on - strand, within LRK53_RS00535 at 117.662 kb on - strand, within LRK53_RS00535 at 118.268 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 115,377 - LRK53_RS00525 0.34 -0.1 115,872 + LRK53_RS00525 0.78 -2.3 115,872 + LRK53_RS00525 0.78 +0.1 116,081 + -0.2 116,081 + -1.3 116,081 + -2.9 116,081 + -0.1 116,081 + -0.7 116,081 + +0.3 116,081 + +0.4 116,081 + +0.5 116,081 + -1.7 116,081 + -0.1 116,082 - -0.5 116,082 - -0.4 116,082 - +0.3 116,082 - -1.1 116,082 - -0.5 116,082 - -0.6 116,082 - -0.9 116,082 - -2.1 116,082 - -2.5 116,082 - +0.8 116,082 - -0.9 116,082 - -0.1 116,082 - -1.3 116,082 - -1.2 116,082 - -1.6 116,082 - -1.1 116,115 + +0.4 116,115 + -0.6 116,115 + -1.5 116,115 + -0.3 116,115 + -0.5 116,116 - -1.2 116,116 - -1.4 116,116 - -2.4 116,116 - -0.0 116,116 - -0.9 116,126 + -0.0 116,126 + -2.4 116,126 + -1.1 116,126 + +0.1 116,126 + -1.6 116,126 + +0.2 116,127 - -2.7 116,127 - -1.9 116,127 - -2.8 116,127 - -0.8 116,127 - -1.8 116,127 - -1.4 116,158 - -0.8 116,235 + +0.4 116,236 - -1.6 116,241 + -1.0 116,247 + -0.6 116,247 + -1.0 116,247 + -1.0 116,247 + -1.0 116,247 + +0.1 116,248 - +0.8 116,248 - -0.8 116,248 - -0.0 116,248 - +1.9 116,248 - -0.6 116,248 - +0.3 116,248 - +0.2 116,248 - +0.2 116,248 - +0.6 116,248 - -0.0 116,261 + +1.1 116,262 - -0.6 116,292 + -1.4 116,292 + -0.9 116,292 + +0.3 116,292 + -1.4 116,292 + -2.8 116,292 + -2.4 116,292 + -0.5 116,292 + -0.4 116,292 + -0.2 116,292 + -1.3 116,292 + +1.0 116,293 - -1.2 116,293 - -0.6 116,293 - -0.5 116,293 - -0.8 116,293 - +0.9 116,293 - -0.0 116,293 - +0.4 116,293 - +0.1 116,293 - -1.5 116,293 - -0.5 116,293 - -0.9 116,293 - -0.7 116,293 - +0.9 116,293 - +0.1 116,293 - -1.1 116,317 + -0.4 116,318 - -1.0 116,318 - -0.7 116,523 + LRK53_RS00530 0.21 -0.9 116,523 + LRK53_RS00530 0.21 +0.3 116,523 + LRK53_RS00530 0.21 +0.6 116,523 + LRK53_RS00530 0.21 -0.4 116,524 - LRK53_RS00530 0.21 -0.3 116,524 - LRK53_RS00530 0.21 -0.9 116,754 + LRK53_RS00530 0.45 +0.6 116,754 + LRK53_RS00530 0.45 -0.0 116,755 - LRK53_RS00530 0.45 -0.6 116,829 + LRK53_RS00530 0.53 -1.9 116,830 - LRK53_RS00530 0.53 +0.1 116,830 - LRK53_RS00530 0.53 -0.6 116,830 - LRK53_RS00530 0.53 -2.1 116,841 + LRK53_RS00530 0.55 -0.8 116,841 + LRK53_RS00530 0.55 -1.4 116,841 + LRK53_RS00530 0.55 +1.1 116,842 - LRK53_RS00530 0.55 -2.2 116,847 + LRK53_RS00530 0.55 -0.1 116,847 + LRK53_RS00530 0.55 +0.7 116,847 + LRK53_RS00530 0.55 -1.4 116,848 - LRK53_RS00530 0.55 -1.9 116,848 - LRK53_RS00530 0.55 -0.7 116,848 - LRK53_RS00530 0.55 -2.0 116,848 - LRK53_RS00530 0.55 -1.2 116,848 - LRK53_RS00530 0.55 -1.2 117,084 + LRK53_RS00530 0.80 -1.7 117,084 + LRK53_RS00530 0.80 -0.3 117,102 + LRK53_RS00530 0.82 -0.6 117,102 + LRK53_RS00530 0.82 -1.0 117,102 + LRK53_RS00530 0.82 -0.5 117,103 - LRK53_RS00530 0.82 +0.3 117,103 - LRK53_RS00530 0.82 +3.1 117,120 + LRK53_RS00530 0.84 -1.1 117,120 + LRK53_RS00530 0.84 -1.7 117,120 + LRK53_RS00530 0.84 -0.6 117,120 + LRK53_RS00530 0.84 +0.3 117,120 + LRK53_RS00530 0.84 -1.7 117,121 - LRK53_RS00530 0.84 -0.4 117,121 - LRK53_RS00530 0.84 +0.4 117,121 - LRK53_RS00530 0.84 -0.3 117,121 - LRK53_RS00530 0.84 +0.3 117,121 - LRK53_RS00530 0.84 -0.3 117,121 - LRK53_RS00530 0.84 +0.1 117,121 - LRK53_RS00530 0.84 -2.5 117,121 - LRK53_RS00530 0.84 -0.4 117,121 - LRK53_RS00530 0.84 +0.6 117,123 + LRK53_RS00530 0.84 +0.4 117,123 + LRK53_RS00530 0.84 -0.6 117,123 + LRK53_RS00530 0.84 +0.1 117,123 + LRK53_RS00530 0.84 +0.6 117,123 + LRK53_RS00530 0.84 -0.6 117,123 + LRK53_RS00530 0.84 -1.0 117,123 + LRK53_RS00530 0.84 -1.4 117,123 + LRK53_RS00530 0.84 +0.3 117,123 + LRK53_RS00530 0.84 -0.5 117,123 + LRK53_RS00530 0.84 -0.9 117,123 + LRK53_RS00530 0.84 -0.3 117,123 + LRK53_RS00530 0.84 +0.4 117,124 - LRK53_RS00530 0.84 +1.9 117,124 - LRK53_RS00530 0.84 -1.1 117,124 - LRK53_RS00530 0.84 -2.1 117,124 - LRK53_RS00530 0.84 -0.0 117,124 - LRK53_RS00530 0.84 -0.6 117,124 - LRK53_RS00530 0.84 -1.6 117,124 - LRK53_RS00530 0.84 -1.9 117,124 - LRK53_RS00530 0.84 -0.3 117,124 - LRK53_RS00530 0.84 +0.3 117,124 - LRK53_RS00530 0.84 -0.2 117,124 - LRK53_RS00530 0.84 +0.1 117,339 + -0.9 117,339 + -1.0 117,339 + -1.4 117,340 - -1.2 117,340 - -0.5 117,371 + -0.6 117,371 + -0.2 117,371 + +0.4 117,371 + +0.3 117,371 + -1.4 117,371 + -0.4 117,371 + -1.4 117,371 + -0.0 117,371 + -0.9 117,371 + +2.1 117,371 + -1.0 117,371 + -0.0 117,371 + -1.0 117,371 + -0.5 117,372 - +0.5 117,372 - -0.0 117,372 - -0.8 117,372 - -0.4 117,372 - -0.9 117,479 + +0.2 117,479 + -1.4 117,662 - LRK53_RS00535 0.33 -0.0 117,662 - LRK53_RS00535 0.33 -0.6 118,268 + -0.6
Or see this region's nucleotide sequence