Experiment: planktonic; Day4; SGW;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00410 and LRK53_RS00415 are separated by 112 nucleotides LRK53_RS00415 and LRK53_RS00420 overlap by 4 nucleotides LRK53_RS00420 and LRK53_RS00425 are separated by 280 nucleotides
LRK53_RS00410: LRK53_RS00410 - M20 family metallopeptidase, at 92,540 to 93,814
_RS00410
LRK53_RS00415: LRK53_RS00415 - DsbA family protein, at 93,927 to 94,478
_RS00415
LRK53_RS00420: LRK53_RS00420 - redoxin domain-containing protein, at 94,475 to 94,987
_RS00420
LRK53_RS00425: LRK53_RS00425 - mercuric reductase, at 95,268 to 96,680
_RS00425
Position (kb)
93
94
95 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 92.969 kb on + strand, within LRK53_RS00410 at 92.969 kb on + strand, within LRK53_RS00410 at 92.969 kb on + strand, within LRK53_RS00410 at 92.970 kb on - strand, within LRK53_RS00410 at 93.037 kb on + strand, within LRK53_RS00410 at 93.232 kb on - strand, within LRK53_RS00410 at 93.523 kb on - strand, within LRK53_RS00410 at 93.649 kb on - strand, within LRK53_RS00410 at 93.735 kb on + strand at 93.735 kb on + strand at 93.735 kb on + strand at 93.735 kb on + strand at 93.735 kb on + strand at 93.736 kb on - strand at 93.988 kb on + strand, within LRK53_RS00415 at 93.988 kb on + strand, within LRK53_RS00415 at 93.988 kb on + strand, within LRK53_RS00415 at 93.988 kb on + strand, within LRK53_RS00415 at 93.988 kb on + strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 94.006 kb on + strand, within LRK53_RS00415 at 94.007 kb on - strand, within LRK53_RS00415 at 94.007 kb on - strand, within LRK53_RS00415 at 94.007 kb on - strand, within LRK53_RS00415 at 94.186 kb on + strand, within LRK53_RS00415 at 94.186 kb on + strand, within LRK53_RS00415 at 94.187 kb on - strand, within LRK53_RS00415 at 94.187 kb on - strand, within LRK53_RS00415 at 94.261 kb on + strand, within LRK53_RS00415 at 94.261 kb on + strand, within LRK53_RS00415 at 94.261 kb on + strand, within LRK53_RS00415 at 94.261 kb on + strand, within LRK53_RS00415 at 94.262 kb on - strand, within LRK53_RS00415 at 94.262 kb on - strand, within LRK53_RS00415 at 94.424 kb on + strand at 94.424 kb on + strand at 94.424 kb on + strand at 94.425 kb on - strand at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.665 kb on + strand, within LRK53_RS00420 at 94.666 kb on - strand, within LRK53_RS00420 at 94.666 kb on - strand, within LRK53_RS00420 at 94.830 kb on + strand, within LRK53_RS00420 at 94.830 kb on + strand, within LRK53_RS00420 at 94.830 kb on + strand, within LRK53_RS00420 at 94.831 kb on - strand, within LRK53_RS00420 at 94.831 kb on - strand, within LRK53_RS00420 at 94.831 kb on - strand, within LRK53_RS00420 at 94.875 kb on + strand, within LRK53_RS00420 at 94.875 kb on + strand, within LRK53_RS00420 at 94.876 kb on - strand, within LRK53_RS00420 at 94.997 kb on + strand at 94.998 kb on - strand at 94.998 kb on - strand at 95.171 kb on + strand at 95.171 kb on + strand at 95.171 kb on + strand at 95.171 kb on + strand at 95.171 kb on + strand at 95.171 kb on + strand at 95.171 kb on + strand at 95.171 kb on + strand at 95.171 kb on + strand at 95.171 kb on + strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.172 kb on - strand at 95.313 kb on + strand at 95.314 kb on - strand at 95.371 kb on + strand at 95.371 kb on + strand at 95.371 kb on + strand at 95.372 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day4; SGW; remove 92,969 + LRK53_RS00410 0.34 -0.9 92,969 + LRK53_RS00410 0.34 -1.9 92,969 + LRK53_RS00410 0.34 -0.1 92,970 - LRK53_RS00410 0.34 -0.7 93,037 + LRK53_RS00410 0.39 -0.5 93,232 - LRK53_RS00410 0.54 -2.0 93,523 - LRK53_RS00410 0.77 +1.2 93,649 - LRK53_RS00410 0.87 -1.9 93,735 + -0.5 93,735 + -2.5 93,735 + -1.0 93,735 + -0.5 93,735 + +0.1 93,736 - -0.0 93,988 + LRK53_RS00415 0.11 -0.8 93,988 + LRK53_RS00415 0.11 -0.5 93,988 + LRK53_RS00415 0.11 -2.2 93,988 + LRK53_RS00415 0.11 +0.5 93,988 + LRK53_RS00415 0.11 -0.9 93,989 - LRK53_RS00415 0.11 -1.6 93,989 - LRK53_RS00415 0.11 -1.4 93,989 - LRK53_RS00415 0.11 +1.1 93,989 - LRK53_RS00415 0.11 +0.1 93,989 - LRK53_RS00415 0.11 -0.8 93,989 - LRK53_RS00415 0.11 +0.9 93,989 - LRK53_RS00415 0.11 +1.9 93,989 - LRK53_RS00415 0.11 +2.2 94,006 + LRK53_RS00415 0.14 -1.3 94,007 - LRK53_RS00415 0.14 +0.5 94,007 - LRK53_RS00415 0.14 +0.3 94,007 - LRK53_RS00415 0.14 +0.5 94,186 + LRK53_RS00415 0.47 -1.2 94,186 + LRK53_RS00415 0.47 +0.1 94,187 - LRK53_RS00415 0.47 -0.7 94,187 - LRK53_RS00415 0.47 -0.3 94,261 + LRK53_RS00415 0.61 -0.5 94,261 + LRK53_RS00415 0.61 -3.0 94,261 + LRK53_RS00415 0.61 -0.9 94,261 + LRK53_RS00415 0.61 -0.5 94,262 - LRK53_RS00415 0.61 -1.6 94,262 - LRK53_RS00415 0.61 -0.8 94,424 + -0.5 94,424 + -0.4 94,424 + -0.8 94,425 - -0.6 94,593 + LRK53_RS00420 0.23 +0.2 94,593 + LRK53_RS00420 0.23 +0.2 94,593 + LRK53_RS00420 0.23 +0.1 94,593 + LRK53_RS00420 0.23 +0.2 94,593 + LRK53_RS00420 0.23 -1.3 94,593 + LRK53_RS00420 0.23 -0.0 94,593 + LRK53_RS00420 0.23 -1.1 94,593 + LRK53_RS00420 0.23 -1.4 94,593 + LRK53_RS00420 0.23 -0.1 94,593 + LRK53_RS00420 0.23 +0.3 94,593 + LRK53_RS00420 0.23 -1.7 94,593 + LRK53_RS00420 0.23 -0.2 94,593 + LRK53_RS00420 0.23 -0.2 94,593 + LRK53_RS00420 0.23 +0.3 94,593 + LRK53_RS00420 0.23 +1.0 94,594 - LRK53_RS00420 0.23 -0.9 94,594 - LRK53_RS00420 0.23 +0.1 94,594 - LRK53_RS00420 0.23 -0.9 94,594 - LRK53_RS00420 0.23 -1.0 94,594 - LRK53_RS00420 0.23 +0.6 94,594 - LRK53_RS00420 0.23 -0.1 94,594 - LRK53_RS00420 0.23 +0.1 94,594 - LRK53_RS00420 0.23 -1.1 94,594 - LRK53_RS00420 0.23 -1.0 94,594 - LRK53_RS00420 0.23 +0.3 94,665 + LRK53_RS00420 0.37 -0.5 94,666 - LRK53_RS00420 0.37 +0.5 94,666 - LRK53_RS00420 0.37 -0.5 94,830 + LRK53_RS00420 0.69 -0.4 94,830 + LRK53_RS00420 0.69 -0.8 94,830 + LRK53_RS00420 0.69 -0.4 94,831 - LRK53_RS00420 0.69 -0.3 94,831 - LRK53_RS00420 0.69 -0.5 94,831 - LRK53_RS00420 0.69 -0.2 94,875 + LRK53_RS00420 0.78 +0.1 94,875 + LRK53_RS00420 0.78 -0.1 94,876 - LRK53_RS00420 0.78 -0.7 94,997 + -0.6 94,998 - -0.2 94,998 - -0.1 95,171 + +0.1 95,171 + -0.6 95,171 + +0.3 95,171 + +0.5 95,171 + -3.3 95,171 + -2.4 95,171 + -0.7 95,171 + +0.5 95,171 + -0.7 95,171 + -1.3 95,172 - -0.8 95,172 - -0.2 95,172 - -0.9 95,172 - -0.0 95,172 - +0.3 95,172 - -0.6 95,172 - +0.1 95,172 - -1.1 95,172 - -2.1 95,172 - -0.6 95,172 - +0.3 95,172 - -1.0 95,172 - +2.5 95,313 + +0.3 95,314 - -2.5 95,371 + +0.9 95,371 + -1.5 95,371 + -0.1 95,372 - +0.1
Or see this region's nucleotide sequence