Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39435

Experiment: Motility_outer_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS39430 and QEN71_RS39435 overlap by 4 nucleotidesQEN71_RS39435 and QEN71_RS39440 overlap by 8 nucleotides QEN71_RS39430: QEN71_RS39430 - molybdopterin-dependent oxidoreductase, at 2,227,733 to 2,230,804 _RS39430 QEN71_RS39435: QEN71_RS39435 - UbiX family flavin prenyltransferase, at 2,230,801 to 2,231,433 _RS39435 QEN71_RS39440: QEN71_RS39440 - UbiD family decarboxylase, at 2,231,426 to 2,232,985 _RS39440 Position (kb) 2230 2231 2232Strain fitness (log2 ratio) -3 -2 -1 0 1at 2229.955 kb on - strand, within QEN71_RS39430at 2229.955 kb on - strand, within QEN71_RS39430at 2230.090 kb on + strand, within QEN71_RS39430at 2230.091 kb on - strand, within QEN71_RS39430at 2230.120 kb on - strand, within QEN71_RS39430at 2230.419 kb on + strand, within QEN71_RS39430at 2230.644 kb on + strandat 2231.781 kb on + strand, within QEN71_RS39440at 2231.859 kb on + strand, within QEN71_RS39440at 2232.063 kb on + strand, within QEN71_RS39440at 2232.063 kb on + strand, within QEN71_RS39440at 2232.064 kb on - strand, within QEN71_RS39440

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample
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2,229,955 - QEN71_RS39430 0.72 +0.5
2,229,955 - QEN71_RS39430 0.72 +0.2
2,230,090 + QEN71_RS39430 0.77 -0.6
2,230,091 - QEN71_RS39430 0.77 +0.4
2,230,120 - QEN71_RS39430 0.78 -0.4
2,230,419 + QEN71_RS39430 0.87 +0.3
2,230,644 + -0.5
2,231,781 + QEN71_RS39440 0.23 -0.2
2,231,859 + QEN71_RS39440 0.28 -1.1
2,232,063 + QEN71_RS39440 0.41 -0.7
2,232,063 + QEN71_RS39440 0.41 -3.5
2,232,064 - QEN71_RS39440 0.41 -1.2

Or see this region's nucleotide sequence