Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39065

Experiment: Motility_outer_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS39060 and QEN71_RS39065 are separated by 170 nucleotidesQEN71_RS39065 and QEN71_RS39070 are separated by 250 nucleotides QEN71_RS39060: QEN71_RS39060 - helix-turn-helix domain-containing protein, at 2,143,198 to 2,144,133 _RS39060 QEN71_RS39065: QEN71_RS39065 - ATP-binding protein, at 2,144,304 to 2,146,370 _RS39065 QEN71_RS39070: QEN71_RS39070 - YbdK family carboxylate-amine ligase, at 2,146,621 to 2,147,748 _RS39070 Position (kb) 2144 2145 2146 2147Strain fitness (log2 ratio) -3 -2 -1 0 1at 2143.304 kb on + strand, within QEN71_RS39060at 2143.305 kb on - strand, within QEN71_RS39060at 2143.962 kb on - strand, within QEN71_RS39060at 2144.144 kb on - strandat 2144.154 kb on - strandat 2144.251 kb on - strandat 2144.334 kb on + strandat 2145.571 kb on + strand, within QEN71_RS39065at 2145.572 kb on - strand, within QEN71_RS39065at 2145.955 kb on + strand, within QEN71_RS39065at 2145.956 kb on - strand, within QEN71_RS39065at 2145.988 kb on + strand, within QEN71_RS39065at 2145.989 kb on - strand, within QEN71_RS39065at 2146.213 kb on - strandat 2146.213 kb on - strandat 2146.250 kb on - strandat 2146.578 kb on + strandat 2146.578 kb on + strandat 2146.587 kb on + strandat 2146.658 kb on - strandat 2146.658 kb on - strandat 2146.658 kb on - strandat 2146.687 kb on - strandat 2146.739 kb on - strand, within QEN71_RS39070at 2146.756 kb on - strand, within QEN71_RS39070at 2146.832 kb on - strand, within QEN71_RS39070at 2146.984 kb on - strand, within QEN71_RS39070at 2146.986 kb on - strand, within QEN71_RS39070at 2147.038 kb on + strand, within QEN71_RS39070at 2147.071 kb on + strand, within QEN71_RS39070at 2147.072 kb on - strand, within QEN71_RS39070at 2147.072 kb on - strand, within QEN71_RS39070at 2147.081 kb on + strand, within QEN71_RS39070at 2147.132 kb on + strand, within QEN71_RS39070at 2147.133 kb on - strand, within QEN71_RS39070at 2147.133 kb on - strand, within QEN71_RS39070at 2147.243 kb on + strand, within QEN71_RS39070at 2147.243 kb on + strand, within QEN71_RS39070at 2147.244 kb on - strand, within QEN71_RS39070at 2147.244 kb on - strand, within QEN71_RS39070

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample
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2,143,304 + QEN71_RS39060 0.11 -0.7
2,143,305 - QEN71_RS39060 0.11 -0.2
2,143,962 - QEN71_RS39060 0.82 -2.0
2,144,144 - -1.2
2,144,154 - -0.0
2,144,251 - +1.3
2,144,334 + -0.7
2,145,571 + QEN71_RS39065 0.61 +0.9
2,145,572 - QEN71_RS39065 0.61 -0.4
2,145,955 + QEN71_RS39065 0.80 +0.2
2,145,956 - QEN71_RS39065 0.80 -0.5
2,145,988 + QEN71_RS39065 0.81 +0.4
2,145,989 - QEN71_RS39065 0.82 -0.7
2,146,213 - -1.0
2,146,213 - +1.0
2,146,250 - -1.5
2,146,578 + -1.1
2,146,578 + -0.8
2,146,587 + +0.5
2,146,658 - -0.7
2,146,658 - -0.3
2,146,658 - -0.9
2,146,687 - -2.2
2,146,739 - QEN71_RS39070 0.10 -0.2
2,146,756 - QEN71_RS39070 0.12 -2.2
2,146,832 - QEN71_RS39070 0.19 -2.9
2,146,984 - QEN71_RS39070 0.32 -0.4
2,146,986 - QEN71_RS39070 0.32 -0.7
2,147,038 + QEN71_RS39070 0.37 +0.8
2,147,071 + QEN71_RS39070 0.40 -1.0
2,147,072 - QEN71_RS39070 0.40 +0.5
2,147,072 - QEN71_RS39070 0.40 -0.2
2,147,081 + QEN71_RS39070 0.41 -0.5
2,147,132 + QEN71_RS39070 0.45 +1.0
2,147,133 - QEN71_RS39070 0.45 -1.4
2,147,133 - QEN71_RS39070 0.45 +0.6
2,147,243 + QEN71_RS39070 0.55 +1.0
2,147,243 + QEN71_RS39070 0.55 -0.9
2,147,244 - QEN71_RS39070 0.55 -2.5
2,147,244 - QEN71_RS39070 0.55 -0.2

Or see this region's nucleotide sequence