Experiment: Motility_outer_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS35310 and QEN71_RS35315 are separated by 147 nucleotides QEN71_RS35315 and QEN71_RS35320 are separated by 287 nucleotides QEN71_RS35320 and QEN71_RS35325 are separated by 369 nucleotides
QEN71_RS35310: QEN71_RS35310 - TonB-dependent receptor, at 1,272,985 to 1,275,198
_RS35310
QEN71_RS35315: QEN71_RS35315 - SET domain-containing protein-lysine N-methyltransferase, at 1,275,346 to 1,275,783
_RS35315
QEN71_RS35320: QEN71_RS35320 - HU family DNA-binding protein, at 1,276,071 to 1,276,349
_RS35320
QEN71_RS35325: QEN71_RS35325 - hypothetical protein, at 1,276,719 to 1,279,082
_RS35325
Position (kb)
1276
1277 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1275.118 kb on + strand at 1275.119 kb on - strand at 1275.133 kb on + strand at 1275.134 kb on - strand at 1275.249 kb on - strand at 1275.249 kb on - strand at 1275.408 kb on - strand, within QEN71_RS35315 at 1275.416 kb on + strand, within QEN71_RS35315 at 1275.416 kb on + strand, within QEN71_RS35315 at 1275.416 kb on + strand, within QEN71_RS35315 at 1275.464 kb on + strand, within QEN71_RS35315 at 1275.464 kb on + strand, within QEN71_RS35315 at 1275.699 kb on + strand, within QEN71_RS35315 at 1275.699 kb on + strand, within QEN71_RS35315 at 1275.701 kb on + strand, within QEN71_RS35315 at 1275.701 kb on + strand, within QEN71_RS35315 at 1275.701 kb on + strand, within QEN71_RS35315 at 1275.702 kb on - strand, within QEN71_RS35315 at 1275.702 kb on - strand, within QEN71_RS35315 at 1275.702 kb on - strand, within QEN71_RS35315 at 1275.702 kb on - strand, within QEN71_RS35315 at 1275.853 kb on + strand at 1275.854 kb on - strand at 1276.045 kb on + strand at 1276.046 kb on - strand at 1276.046 kb on - strand at 1276.056 kb on + strand at 1276.056 kb on + strand at 1276.277 kb on + strand, within QEN71_RS35320 at 1276.278 kb on - strand, within QEN71_RS35320 at 1276.642 kb on - strand at 1276.683 kb on + strand at 1276.683 kb on + strand at 1276.683 kb on + strand at 1276.743 kb on + strand at 1276.743 kb on + strand at 1276.744 kb on - strand at 1276.874 kb on + strand at 1276.874 kb on + strand at 1276.874 kb on + strand at 1276.874 kb on + strand at 1276.874 kb on + strand at 1276.874 kb on + strand at 1276.874 kb on + strand at 1276.874 kb on + strand at 1276.875 kb on - strand at 1276.875 kb on - strand at 1276.875 kb on - strand at 1276.875 kb on - strand at 1277.015 kb on - strand, within QEN71_RS35325 at 1277.021 kb on + strand, within QEN71_RS35325 at 1277.021 kb on + strand, within QEN71_RS35325 at 1277.021 kb on + strand, within QEN71_RS35325 at 1277.022 kb on - strand, within QEN71_RS35325 at 1277.022 kb on - strand, within QEN71_RS35325 at 1277.022 kb on - strand, within QEN71_RS35325 at 1277.054 kb on + strand, within QEN71_RS35325 at 1277.055 kb on - strand, within QEN71_RS35325 at 1277.112 kb on + strand, within QEN71_RS35325 at 1277.112 kb on + strand, within QEN71_RS35325 at 1277.112 kb on + strand, within QEN71_RS35325 at 1277.113 kb on - strand, within QEN71_RS35325 at 1277.113 kb on - strand, within QEN71_RS35325 at 1277.113 kb on - strand, within QEN71_RS35325 at 1277.113 kb on - strand, within QEN71_RS35325 at 1277.113 kb on - strand, within QEN71_RS35325 at 1277.172 kb on + strand, within QEN71_RS35325
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample remove 1,275,118 + -0.8 1,275,119 - +0.8 1,275,133 + -2.2 1,275,134 - -0.0 1,275,249 - +1.0 1,275,249 - +0.6 1,275,408 - QEN71_RS35315 0.14 -1.0 1,275,416 + QEN71_RS35315 0.16 -1.6 1,275,416 + QEN71_RS35315 0.16 -0.2 1,275,416 + QEN71_RS35315 0.16 +0.2 1,275,464 + QEN71_RS35315 0.27 -1.1 1,275,464 + QEN71_RS35315 0.27 +0.7 1,275,699 + QEN71_RS35315 0.81 -0.4 1,275,699 + QEN71_RS35315 0.81 +2.4 1,275,701 + QEN71_RS35315 0.81 -0.2 1,275,701 + QEN71_RS35315 0.81 -0.4 1,275,701 + QEN71_RS35315 0.81 -0.3 1,275,702 - QEN71_RS35315 0.81 -0.2 1,275,702 - QEN71_RS35315 0.81 -0.5 1,275,702 - QEN71_RS35315 0.81 -0.4 1,275,702 - QEN71_RS35315 0.81 -1.3 1,275,853 + -0.5 1,275,854 - +0.5 1,276,045 + +0.1 1,276,046 - -0.3 1,276,046 - +1.1 1,276,056 + +1.6 1,276,056 + -0.1 1,276,277 + QEN71_RS35320 0.74 -0.5 1,276,278 - QEN71_RS35320 0.74 +0.2 1,276,642 - -2.5 1,276,683 + +1.2 1,276,683 + +0.4 1,276,683 + -1.0 1,276,743 + +1.5 1,276,743 + +0.2 1,276,744 - -0.5 1,276,874 + -0.2 1,276,874 + -1.1 1,276,874 + -1.5 1,276,874 + -1.2 1,276,874 + -1.2 1,276,874 + -0.3 1,276,874 + +0.0 1,276,874 + -1.5 1,276,875 - -0.9 1,276,875 - -0.3 1,276,875 - -0.8 1,276,875 - +2.6 1,277,015 - QEN71_RS35325 0.13 +1.8 1,277,021 + QEN71_RS35325 0.13 -0.3 1,277,021 + QEN71_RS35325 0.13 +1.2 1,277,021 + QEN71_RS35325 0.13 +0.4 1,277,022 - QEN71_RS35325 0.13 +2.0 1,277,022 - QEN71_RS35325 0.13 +0.6 1,277,022 - QEN71_RS35325 0.13 -1.4 1,277,054 + QEN71_RS35325 0.14 -2.1 1,277,055 - QEN71_RS35325 0.14 -1.4 1,277,112 + QEN71_RS35325 0.17 -0.2 1,277,112 + QEN71_RS35325 0.17 +0.2 1,277,112 + QEN71_RS35325 0.17 -0.6 1,277,113 - QEN71_RS35325 0.17 -1.3 1,277,113 - QEN71_RS35325 0.17 -1.9 1,277,113 - QEN71_RS35325 0.17 -0.2 1,277,113 - QEN71_RS35325 0.17 +0.2 1,277,113 - QEN71_RS35325 0.17 -0.5 1,277,172 + QEN71_RS35325 0.19 -2.3
Or see this region's nucleotide sequence