Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS35320

Experiment: Motility_outer_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS35310 and QEN71_RS35315 are separated by 147 nucleotidesQEN71_RS35315 and QEN71_RS35320 are separated by 287 nucleotidesQEN71_RS35320 and QEN71_RS35325 are separated by 369 nucleotides QEN71_RS35310: QEN71_RS35310 - TonB-dependent receptor, at 1,272,985 to 1,275,198 _RS35310 QEN71_RS35315: QEN71_RS35315 - SET domain-containing protein-lysine N-methyltransferase, at 1,275,346 to 1,275,783 _RS35315 QEN71_RS35320: QEN71_RS35320 - HU family DNA-binding protein, at 1,276,071 to 1,276,349 _RS35320 QEN71_RS35325: QEN71_RS35325 - hypothetical protein, at 1,276,719 to 1,279,082 _RS35325 Position (kb) 1276 1277Strain fitness (log2 ratio) -2 -1 0 1 2at 1275.118 kb on + strandat 1275.119 kb on - strandat 1275.133 kb on + strandat 1275.134 kb on - strandat 1275.249 kb on - strandat 1275.249 kb on - strandat 1275.408 kb on - strand, within QEN71_RS35315at 1275.416 kb on + strand, within QEN71_RS35315at 1275.416 kb on + strand, within QEN71_RS35315at 1275.416 kb on + strand, within QEN71_RS35315at 1275.464 kb on + strand, within QEN71_RS35315at 1275.464 kb on + strand, within QEN71_RS35315at 1275.699 kb on + strand, within QEN71_RS35315at 1275.699 kb on + strand, within QEN71_RS35315at 1275.701 kb on + strand, within QEN71_RS35315at 1275.701 kb on + strand, within QEN71_RS35315at 1275.701 kb on + strand, within QEN71_RS35315at 1275.702 kb on - strand, within QEN71_RS35315at 1275.702 kb on - strand, within QEN71_RS35315at 1275.702 kb on - strand, within QEN71_RS35315at 1275.702 kb on - strand, within QEN71_RS35315at 1275.853 kb on + strandat 1275.854 kb on - strandat 1276.045 kb on + strandat 1276.046 kb on - strandat 1276.046 kb on - strandat 1276.056 kb on + strandat 1276.056 kb on + strandat 1276.277 kb on + strand, within QEN71_RS35320at 1276.278 kb on - strand, within QEN71_RS35320at 1276.642 kb on - strandat 1276.683 kb on + strandat 1276.683 kb on + strandat 1276.683 kb on + strandat 1276.743 kb on + strandat 1276.743 kb on + strandat 1276.744 kb on - strandat 1276.874 kb on + strandat 1276.874 kb on + strandat 1276.874 kb on + strandat 1276.874 kb on + strandat 1276.874 kb on + strandat 1276.874 kb on + strandat 1276.874 kb on + strandat 1276.874 kb on + strandat 1276.875 kb on - strandat 1276.875 kb on - strandat 1276.875 kb on - strandat 1276.875 kb on - strandat 1277.015 kb on - strand, within QEN71_RS35325at 1277.021 kb on + strand, within QEN71_RS35325at 1277.021 kb on + strand, within QEN71_RS35325at 1277.021 kb on + strand, within QEN71_RS35325at 1277.022 kb on - strand, within QEN71_RS35325at 1277.022 kb on - strand, within QEN71_RS35325at 1277.022 kb on - strand, within QEN71_RS35325at 1277.054 kb on + strand, within QEN71_RS35325at 1277.055 kb on - strand, within QEN71_RS35325at 1277.112 kb on + strand, within QEN71_RS35325at 1277.112 kb on + strand, within QEN71_RS35325at 1277.112 kb on + strand, within QEN71_RS35325at 1277.113 kb on - strand, within QEN71_RS35325at 1277.113 kb on - strand, within QEN71_RS35325at 1277.113 kb on - strand, within QEN71_RS35325at 1277.113 kb on - strand, within QEN71_RS35325at 1277.113 kb on - strand, within QEN71_RS35325at 1277.172 kb on + strand, within QEN71_RS35325

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample
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1,275,118 + -0.8
1,275,119 - +0.8
1,275,133 + -2.2
1,275,134 - -0.0
1,275,249 - +1.0
1,275,249 - +0.6
1,275,408 - QEN71_RS35315 0.14 -1.0
1,275,416 + QEN71_RS35315 0.16 -1.6
1,275,416 + QEN71_RS35315 0.16 -0.2
1,275,416 + QEN71_RS35315 0.16 +0.2
1,275,464 + QEN71_RS35315 0.27 -1.1
1,275,464 + QEN71_RS35315 0.27 +0.7
1,275,699 + QEN71_RS35315 0.81 -0.4
1,275,699 + QEN71_RS35315 0.81 +2.4
1,275,701 + QEN71_RS35315 0.81 -0.2
1,275,701 + QEN71_RS35315 0.81 -0.4
1,275,701 + QEN71_RS35315 0.81 -0.3
1,275,702 - QEN71_RS35315 0.81 -0.2
1,275,702 - QEN71_RS35315 0.81 -0.5
1,275,702 - QEN71_RS35315 0.81 -0.4
1,275,702 - QEN71_RS35315 0.81 -1.3
1,275,853 + -0.5
1,275,854 - +0.5
1,276,045 + +0.1
1,276,046 - -0.3
1,276,046 - +1.1
1,276,056 + +1.6
1,276,056 + -0.1
1,276,277 + QEN71_RS35320 0.74 -0.5
1,276,278 - QEN71_RS35320 0.74 +0.2
1,276,642 - -2.5
1,276,683 + +1.2
1,276,683 + +0.4
1,276,683 + -1.0
1,276,743 + +1.5
1,276,743 + +0.2
1,276,744 - -0.5
1,276,874 + -0.2
1,276,874 + -1.1
1,276,874 + -1.5
1,276,874 + -1.2
1,276,874 + -1.2
1,276,874 + -0.3
1,276,874 + +0.0
1,276,874 + -1.5
1,276,875 - -0.9
1,276,875 - -0.3
1,276,875 - -0.8
1,276,875 - +2.6
1,277,015 - QEN71_RS35325 0.13 +1.8
1,277,021 + QEN71_RS35325 0.13 -0.3
1,277,021 + QEN71_RS35325 0.13 +1.2
1,277,021 + QEN71_RS35325 0.13 +0.4
1,277,022 - QEN71_RS35325 0.13 +2.0
1,277,022 - QEN71_RS35325 0.13 +0.6
1,277,022 - QEN71_RS35325 0.13 -1.4
1,277,054 + QEN71_RS35325 0.14 -2.1
1,277,055 - QEN71_RS35325 0.14 -1.4
1,277,112 + QEN71_RS35325 0.17 -0.2
1,277,112 + QEN71_RS35325 0.17 +0.2
1,277,112 + QEN71_RS35325 0.17 -0.6
1,277,113 - QEN71_RS35325 0.17 -1.3
1,277,113 - QEN71_RS35325 0.17 -1.9
1,277,113 - QEN71_RS35325 0.17 -0.2
1,277,113 - QEN71_RS35325 0.17 +0.2
1,277,113 - QEN71_RS35325 0.17 -0.5
1,277,172 + QEN71_RS35325 0.19 -2.3

Or see this region's nucleotide sequence