Experiment: Motility_outer_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS34690 and QEN71_RS34695 are separated by 109 nucleotides QEN71_RS34695 and QEN71_RS34700 are separated by 15 nucleotides QEN71_RS34700 and QEN71_RS34705 are separated by 195 nucleotides
QEN71_RS34690: QEN71_RS34690 - hypothetical protein, at 1,099,522 to 1,102,035
_RS34690
QEN71_RS34695: QEN71_RS34695 - hypothetical protein, at 1,102,145 to 1,102,996
_RS34695
QEN71_RS34700: QEN71_RS34700 - PAAR domain-containing protein, at 1,103,012 to 1,103,266
_RS34700
QEN71_RS34705: QEN71_RS34705 - hypothetical protein, at 1,103,462 to 1,103,719
_RS34705
Position (kb)
1102
1103 Strain fitness (log2 ratio)
-1
0
1
2 at 1101.341 kb on + strand, within QEN71_RS34690 at 1101.422 kb on - strand, within QEN71_RS34690 at 1101.478 kb on - strand, within QEN71_RS34690 at 1101.504 kb on + strand, within QEN71_RS34690 at 1101.527 kb on + strand, within QEN71_RS34690 at 1101.566 kb on + strand, within QEN71_RS34690 at 1101.566 kb on + strand, within QEN71_RS34690 at 1101.566 kb on + strand, within QEN71_RS34690 at 1101.567 kb on - strand, within QEN71_RS34690 at 1101.774 kb on + strand, within QEN71_RS34690 at 1102.053 kb on - strand at 1102.153 kb on + strand at 1102.172 kb on - strand at 1102.354 kb on + strand, within QEN71_RS34695 at 1102.374 kb on - strand, within QEN71_RS34695 at 1102.559 kb on + strand, within QEN71_RS34695 at 1102.560 kb on - strand, within QEN71_RS34695 at 1102.572 kb on - strand, within QEN71_RS34695 at 1102.653 kb on - strand, within QEN71_RS34695 at 1102.688 kb on + strand, within QEN71_RS34695 at 1102.827 kb on - strand, within QEN71_RS34695 at 1103.083 kb on + strand, within QEN71_RS34700 at 1103.134 kb on - strand, within QEN71_RS34700 at 1103.155 kb on + strand, within QEN71_RS34700 at 1103.155 kb on + strand, within QEN71_RS34700 at 1103.155 kb on + strand, within QEN71_RS34700 at 1103.272 kb on + strand at 1103.424 kb on - strand at 1103.532 kb on - strand, within QEN71_RS34705
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample remove 1,101,341 + QEN71_RS34690 0.72 +1.0 1,101,422 - QEN71_RS34690 0.76 +0.1 1,101,478 - QEN71_RS34690 0.78 -0.2 1,101,504 + QEN71_RS34690 0.79 +0.9 1,101,527 + QEN71_RS34690 0.80 +1.2 1,101,566 + QEN71_RS34690 0.81 +1.2 1,101,566 + QEN71_RS34690 0.81 +1.8 1,101,566 + QEN71_RS34690 0.81 +1.5 1,101,567 - QEN71_RS34690 0.81 -0.3 1,101,774 + QEN71_RS34690 0.90 +1.1 1,102,053 - -0.2 1,102,153 + -0.2 1,102,172 - -0.3 1,102,354 + QEN71_RS34695 0.25 +0.4 1,102,374 - QEN71_RS34695 0.27 +0.4 1,102,559 + QEN71_RS34695 0.49 +1.2 1,102,560 - QEN71_RS34695 0.49 -0.6 1,102,572 - QEN71_RS34695 0.50 +0.7 1,102,653 - QEN71_RS34695 0.60 +1.3 1,102,688 + QEN71_RS34695 0.64 +2.1 1,102,827 - QEN71_RS34695 0.80 -0.1 1,103,083 + QEN71_RS34700 0.28 +0.0 1,103,134 - QEN71_RS34700 0.48 +0.8 1,103,155 + QEN71_RS34700 0.56 +1.0 1,103,155 + QEN71_RS34700 0.56 +2.3 1,103,155 + QEN71_RS34700 0.56 +1.1 1,103,272 + +1.4 1,103,424 - +0.8 1,103,532 - QEN71_RS34705 0.27 -0.5
Or see this region's nucleotide sequence