Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS31900

Experiment: Motility_outer_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS31895 and QEN71_RS31900 are separated by 67 nucleotidesQEN71_RS31900 and QEN71_RS31905 overlap by 4 nucleotidesQEN71_RS31905 and QEN71_RS31910 overlap by 4 nucleotides QEN71_RS31895: QEN71_RS31895 - ABC transporter substrate-binding protein, at 507,901 to 509,523 _RS31895 QEN71_RS31900: QEN71_RS31900 - ABC transporter permease, at 509,591 to 510,547 _RS31900 QEN71_RS31905: QEN71_RS31905 - ABC transporter permease, at 510,544 to 511,503 _RS31905 QEN71_RS31910: QEN71_RS31910 - ABC transporter ATP-binding protein, at 511,500 to 513,329 _RS31910 Position (kb) 509 510 511Strain fitness (log2 ratio) -2 -1 0 1 2at 508.801 kb on + strand, within QEN71_RS31895at 508.802 kb on - strand, within QEN71_RS31895at 508.960 kb on + strand, within QEN71_RS31895at 508.961 kb on - strand, within QEN71_RS31895at 508.961 kb on - strand, within QEN71_RS31895at 508.961 kb on - strand, within QEN71_RS31895at 509.057 kb on - strand, within QEN71_RS31895at 509.057 kb on - strand, within QEN71_RS31895at 509.057 kb on - strand, within QEN71_RS31895at 509.359 kb on + strand, within QEN71_RS31895at 509.688 kb on + strand, within QEN71_RS31900at 509.689 kb on - strand, within QEN71_RS31900at 509.795 kb on + strand, within QEN71_RS31900at 509.796 kb on - strand, within QEN71_RS31900at 510.143 kb on + strand, within QEN71_RS31900at 510.144 kb on - strand, within QEN71_RS31900at 510.144 kb on - strand, within QEN71_RS31900at 510.236 kb on + strand, within QEN71_RS31900at 510.236 kb on + strand, within QEN71_RS31900at 510.236 kb on + strand, within QEN71_RS31900at 510.237 kb on - strand, within QEN71_RS31900at 510.237 kb on - strand, within QEN71_RS31900at 510.305 kb on - strand, within QEN71_RS31900at 510.347 kb on + strand, within QEN71_RS31900at 510.348 kb on - strand, within QEN71_RS31900at 510.390 kb on - strand, within QEN71_RS31900at 510.480 kb on - strandat 510.480 kb on - strandat 510.775 kb on + strand, within QEN71_RS31905at 510.775 kb on + strand, within QEN71_RS31905at 510.776 kb on - strand, within QEN71_RS31905at 510.776 kb on - strand, within QEN71_RS31905at 510.817 kb on + strand, within QEN71_RS31905at 510.818 kb on - strand, within QEN71_RS31905at 510.818 kb on - strand, within QEN71_RS31905at 510.892 kb on + strand, within QEN71_RS31905at 511.089 kb on + strand, within QEN71_RS31905at 511.168 kb on + strand, within QEN71_RS31905at 511.207 kb on + strand, within QEN71_RS31905at 511.209 kb on + strand, within QEN71_RS31905

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample
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508,801 + QEN71_RS31895 0.55 +0.5
508,802 - QEN71_RS31895 0.56 +0.1
508,960 + QEN71_RS31895 0.65 -0.6
508,961 - QEN71_RS31895 0.65 -1.1
508,961 - QEN71_RS31895 0.65 -0.5
508,961 - QEN71_RS31895 0.65 +2.5
509,057 - QEN71_RS31895 0.71 +0.2
509,057 - QEN71_RS31895 0.71 +0.7
509,057 - QEN71_RS31895 0.71 +1.0
509,359 + QEN71_RS31895 0.90 -1.3
509,688 + QEN71_RS31900 0.10 -0.7
509,689 - QEN71_RS31900 0.10 -0.2
509,795 + QEN71_RS31900 0.21 -0.8
509,796 - QEN71_RS31900 0.21 -0.1
510,143 + QEN71_RS31900 0.58 -0.7
510,144 - QEN71_RS31900 0.58 +0.6
510,144 - QEN71_RS31900 0.58 -1.0
510,236 + QEN71_RS31900 0.67 -2.2
510,236 + QEN71_RS31900 0.67 -0.1
510,236 + QEN71_RS31900 0.67 -2.3
510,237 - QEN71_RS31900 0.68 +0.4
510,237 - QEN71_RS31900 0.68 +1.4
510,305 - QEN71_RS31900 0.75 -1.4
510,347 + QEN71_RS31900 0.79 -0.1
510,348 - QEN71_RS31900 0.79 +0.0
510,390 - QEN71_RS31900 0.83 -0.8
510,480 - +0.5
510,480 - -2.1
510,775 + QEN71_RS31905 0.24 -1.6
510,775 + QEN71_RS31905 0.24 -0.2
510,776 - QEN71_RS31905 0.24 -0.1
510,776 - QEN71_RS31905 0.24 +0.0
510,817 + QEN71_RS31905 0.28 -0.5
510,818 - QEN71_RS31905 0.29 -0.9
510,818 - QEN71_RS31905 0.29 -0.4
510,892 + QEN71_RS31905 0.36 -0.4
511,089 + QEN71_RS31905 0.57 +0.7
511,168 + QEN71_RS31905 0.65 -0.9
511,207 + QEN71_RS31905 0.69 -0.5
511,209 + QEN71_RS31905 0.69 -0.4

Or see this region's nucleotide sequence