Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS31500

Experiment: Motility_outer_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS31490 and QEN71_RS31495 overlap by 1 nucleotidesQEN71_RS31495 and QEN71_RS31500 are separated by 51 nucleotidesQEN71_RS31500 and QEN71_RS31505 are separated by 22 nucleotides QEN71_RS31490: QEN71_RS31490 - ABC transporter permease, at 415,473 to 416,417 _RS31490 QEN71_RS31495: QEN71_RS31495 - ABC transporter permease, at 416,417 to 417,301 _RS31495 QEN71_RS31500: QEN71_RS31500 - gamma-glutamyltransferase family protein, at 417,353 to 418,990 _RS31500 QEN71_RS31505: QEN71_RS31505 - response regulator, at 419,013 to 419,933 _RS31505 Position (kb) 417 418 419Strain fitness (log2 ratio) -2 -1 0 1at 416.382 kb on + strandat 416.382 kb on + strandat 416.382 kb on + strandat 416.382 kb on + strandat 416.382 kb on + strandat 416.382 kb on + strandat 416.382 kb on + strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.383 kb on - strandat 416.384 kb on + strandat 416.385 kb on - strandat 416.423 kb on - strandat 416.423 kb on - strandat 416.429 kb on - strandat 416.429 kb on - strandat 416.975 kb on + strand, within QEN71_RS31495at 416.975 kb on + strand, within QEN71_RS31495at 416.975 kb on + strand, within QEN71_RS31495at 416.975 kb on + strand, within QEN71_RS31495at 416.976 kb on - strand, within QEN71_RS31495at 416.976 kb on - strand, within QEN71_RS31495at 417.029 kb on + strand, within QEN71_RS31495at 417.517 kb on + strand, within QEN71_RS31500at 417.518 kb on - strand, within QEN71_RS31500at 417.995 kb on + strand, within QEN71_RS31500at 417.995 kb on + strand, within QEN71_RS31500at 417.995 kb on + strand, within QEN71_RS31500at 417.996 kb on - strand, within QEN71_RS31500at 418.076 kb on + strand, within QEN71_RS31500at 418.076 kb on + strand, within QEN71_RS31500at 418.077 kb on - strand, within QEN71_RS31500at 418.112 kb on + strand, within QEN71_RS31500at 418.122 kb on - strand, within QEN71_RS31500at 418.277 kb on + strand, within QEN71_RS31500at 418.278 kb on - strand, within QEN71_RS31500at 418.278 kb on - strand, within QEN71_RS31500at 418.283 kb on + strand, within QEN71_RS31500at 418.283 kb on + strand, within QEN71_RS31500at 418.340 kb on + strand, within QEN71_RS31500at 418.341 kb on - strand, within QEN71_RS31500at 418.424 kb on + strand, within QEN71_RS31500at 418.424 kb on + strand, within QEN71_RS31500at 418.478 kb on + strand, within QEN71_RS31500at 418.478 kb on + strand, within QEN71_RS31500at 418.478 kb on + strand, within QEN71_RS31500at 418.478 kb on + strand, within QEN71_RS31500at 418.478 kb on + strand, within QEN71_RS31500at 418.478 kb on + strand, within QEN71_RS31500at 418.478 kb on + strand, within QEN71_RS31500at 418.478 kb on + strand, within QEN71_RS31500at 418.479 kb on - strand, within QEN71_RS31500at 418.479 kb on - strand, within QEN71_RS31500at 418.479 kb on - strand, within QEN71_RS31500at 418.479 kb on - strand, within QEN71_RS31500at 418.479 kb on - strand, within QEN71_RS31500at 418.731 kb on - strand, within QEN71_RS31500at 418.877 kb on + strandat 418.877 kb on + strandat 418.877 kb on + strandat 418.877 kb on + strandat 418.877 kb on + strandat 418.877 kb on + strandat 418.878 kb on - strandat 418.878 kb on - strandat 418.879 kb on + strandat 418.940 kb on + strandat 418.941 kb on - strandat 419.219 kb on - strand, within QEN71_RS31505at 419.550 kb on + strand, within QEN71_RS31505at 419.550 kb on + strand, within QEN71_RS31505at 419.550 kb on + strand, within QEN71_RS31505at 419.550 kb on + strand, within QEN71_RS31505at 419.551 kb on - strand, within QEN71_RS31505at 419.623 kb on + strand, within QEN71_RS31505at 419.923 kb on + strandat 419.923 kb on + strandat 419.941 kb on + strandat 419.941 kb on + strandat 419.941 kb on + strandat 419.941 kb on + strandat 419.941 kb on + strandat 419.942 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample
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416,382 + -0.5
416,382 + -2.5
416,382 + -0.6
416,382 + -0.0
416,382 + +0.4
416,382 + -1.0
416,382 + +0.3
416,383 - -0.1
416,383 - +0.1
416,383 - -0.2
416,383 - +0.2
416,383 - +0.7
416,383 - +0.9
416,383 - -0.0
416,383 - -1.1
416,383 - -0.1
416,384 + -2.1
416,385 - +0.3
416,423 - +0.3
416,423 - +1.2
416,429 - -0.6
416,429 - -0.5
416,975 + QEN71_RS31495 0.63 -0.1
416,975 + QEN71_RS31495 0.63 -0.3
416,975 + QEN71_RS31495 0.63 -0.1
416,975 + QEN71_RS31495 0.63 -0.4
416,976 - QEN71_RS31495 0.63 -0.1
416,976 - QEN71_RS31495 0.63 -0.7
417,029 + QEN71_RS31495 0.69 -1.5
417,517 + QEN71_RS31500 0.10 -0.1
417,518 - QEN71_RS31500 0.10 +0.5
417,995 + QEN71_RS31500 0.39 +0.1
417,995 + QEN71_RS31500 0.39 +0.4
417,995 + QEN71_RS31500 0.39 -1.0
417,996 - QEN71_RS31500 0.39 -0.5
418,076 + QEN71_RS31500 0.44 -0.1
418,076 + QEN71_RS31500 0.44 +0.6
418,077 - QEN71_RS31500 0.44 -0.3
418,112 + QEN71_RS31500 0.46 -1.1
418,122 - QEN71_RS31500 0.47 -0.1
418,277 + QEN71_RS31500 0.56 +0.2
418,278 - QEN71_RS31500 0.56 -1.1
418,278 - QEN71_RS31500 0.56 +1.3
418,283 + QEN71_RS31500 0.57 -0.5
418,283 + QEN71_RS31500 0.57 -1.4
418,340 + QEN71_RS31500 0.60 -0.6
418,341 - QEN71_RS31500 0.60 +0.5
418,424 + QEN71_RS31500 0.65 -0.6
418,424 + QEN71_RS31500 0.65 -1.5
418,478 + QEN71_RS31500 0.69 -0.1
418,478 + QEN71_RS31500 0.69 -1.5
418,478 + QEN71_RS31500 0.69 +0.5
418,478 + QEN71_RS31500 0.69 -0.8
418,478 + QEN71_RS31500 0.69 +1.6
418,478 + QEN71_RS31500 0.69 +0.6
418,478 + QEN71_RS31500 0.69 +0.3
418,478 + QEN71_RS31500 0.69 -0.2
418,479 - QEN71_RS31500 0.69 -1.5
418,479 - QEN71_RS31500 0.69 -0.5
418,479 - QEN71_RS31500 0.69 -0.7
418,479 - QEN71_RS31500 0.69 -2.1
418,479 - QEN71_RS31500 0.69 +0.5
418,731 - QEN71_RS31500 0.84 -0.0
418,877 + -1.3
418,877 + -0.6
418,877 + +0.4
418,877 + +0.7
418,877 + +0.5
418,877 + -1.7
418,878 - -1.4
418,878 - +0.0
418,879 + -0.5
418,940 + -0.2
418,941 - -0.5
419,219 - QEN71_RS31505 0.22 +0.5
419,550 + QEN71_RS31505 0.58 -0.8
419,550 + QEN71_RS31505 0.58 -1.3
419,550 + QEN71_RS31505 0.58 +0.4
419,550 + QEN71_RS31505 0.58 -1.3
419,551 - QEN71_RS31505 0.58 -0.5
419,623 + QEN71_RS31505 0.66 +0.6
419,923 + +0.5
419,923 + -0.4
419,941 + -0.5
419,941 + -0.0
419,941 + +0.9
419,941 + -0.1
419,941 + +1.5
419,942 - -0.7

Or see this region's nucleotide sequence