Experiment: Motility_outer_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS29830 and QEN71_RS29835 are separated by 7 nucleotides QEN71_RS29835 and QEN71_RS29840 are separated by 128 nucleotides QEN71_RS29840 and QEN71_RS29845 overlap by 4 nucleotides
QEN71_RS29830: QEN71_RS29830 - amino acid ABC transporter permease, at 32,905 to 33,636
_RS29830
QEN71_RS29835: QEN71_RS29835 - ABC transporter substrate-binding protein, at 33,644 to 34,462
_RS29835
QEN71_RS29840: QEN71_RS29840 - efflux transporter outer membrane subunit, at 34,591 to 36,084
_RS29840
QEN71_RS29845: QEN71_RS29845 - efflux RND transporter permease subunit, at 36,081 to 39,173
_RS29845
Position (kb) 34
35
36
37 Strain fitness (log2 ratio) -2
-1
0
1 at 33.611 kb on + strand at 33.764 kb on - strand, within QEN71_RS29835 at 33.967 kb on - strand, within QEN71_RS29835 at 34.113 kb on + strand, within QEN71_RS29835 at 34.275 kb on + strand, within QEN71_RS29835 at 34.482 kb on + strand at 34.509 kb on + strand at 34.569 kb on + strand at 34.569 kb on + strand at 34.570 kb on - strand at 34.570 kb on - strand at 34.592 kb on + strand at 34.592 kb on + strand at 34.592 kb on + strand at 34.593 kb on - strand at 34.688 kb on + strand at 34.688 kb on + strand at 34.865 kb on + strand, within QEN71_RS29840 at 34.866 kb on - strand, within QEN71_RS29840 at 34.928 kb on + strand, within QEN71_RS29840 at 35.079 kb on + strand, within QEN71_RS29840 at 35.079 kb on + strand, within QEN71_RS29840 at 35.093 kb on + strand, within QEN71_RS29840 at 35.094 kb on - strand, within QEN71_RS29840 at 35.126 kb on + strand, within QEN71_RS29840 at 35.126 kb on + strand, within QEN71_RS29840 at 35.127 kb on - strand, within QEN71_RS29840 at 35.291 kb on + strand, within QEN71_RS29840 at 35.372 kb on + strand, within QEN71_RS29840 at 35.486 kb on + strand, within QEN71_RS29840 at 35.648 kb on + strand, within QEN71_RS29840 at 36.139 kb on + strand at 36.139 kb on + strand at 36.361 kb on + strand at 36.466 kb on + strand, within QEN71_RS29845 at 36.737 kb on - strand, within QEN71_RS29845 at 36.747 kb on + strand, within QEN71_RS29845 at 36.886 kb on + strand, within QEN71_RS29845 at 36.887 kb on - strand, within QEN71_RS29845 at 36.919 kb on + strand, within QEN71_RS29845
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample remove 33,611 + -0.8 33,764 - QEN71_RS29835 0.15 -1.3 33,967 - QEN71_RS29835 0.39 +0.2 34,113 + QEN71_RS29835 0.57 +1.4 34,275 + QEN71_RS29835 0.77 +0.3 34,482 + +0.5 34,509 + -2.0 34,569 + -0.6 34,569 + +0.5 34,570 - -1.7 34,570 - +0.1 34,592 + +0.3 34,592 + +0.0 34,592 + -0.1 34,593 - -0.1 34,688 + +0.4 34,688 + -1.2 34,865 + QEN71_RS29840 0.18 -0.3 34,866 - QEN71_RS29840 0.18 -0.1 34,928 + QEN71_RS29840 0.23 +0.7 35,079 + QEN71_RS29840 0.33 +1.2 35,079 + QEN71_RS29840 0.33 -0.1 35,093 + QEN71_RS29840 0.34 +0.9 35,094 - QEN71_RS29840 0.34 -1.1 35,126 + QEN71_RS29840 0.36 +1.4 35,126 + QEN71_RS29840 0.36 -0.1 35,127 - QEN71_RS29840 0.36 +0.7 35,291 + QEN71_RS29840 0.47 +0.4 35,372 + QEN71_RS29840 0.52 +0.0 35,486 + QEN71_RS29840 0.60 +0.0 35,648 + QEN71_RS29840 0.71 -1.0 36,139 + -0.2 36,139 + +0.4 36,361 + -0.3 36,466 + QEN71_RS29845 0.12 -0.1 36,737 - QEN71_RS29845 0.21 +0.5 36,747 + QEN71_RS29845 0.22 +0.7 36,886 + QEN71_RS29845 0.26 -0.1 36,887 - QEN71_RS29845 0.26 -0.8 36,919 + QEN71_RS29845 0.27 +0.9
Or see this region's nucleotide sequence