Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS27940

Experiment: Motility_outer_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS27930 and QEN71_RS27935 are separated by 42 nucleotidesQEN71_RS27935 and QEN71_RS27940 are separated by 10 nucleotidesQEN71_RS27940 and QEN71_RS27945 are separated by 647 nucleotides QEN71_RS27930: QEN71_RS27930 - thiazole synthase, at 6,210,638 to 6,211,462 _RS27930 QEN71_RS27935: QEN71_RS27935 - sulfur carrier protein ThiS, at 6,211,505 to 6,211,702 _RS27935 QEN71_RS27940: QEN71_RS27940 - FAD-dependent oxidoreductase, at 6,211,713 to 6,212,861 _RS27940 QEN71_RS27945: QEN71_RS27945 - ABC transporter ATP-binding protein/permease, at 6,213,509 to 6,215,242 _RS27945 Position (kb) 6211 6212 6213Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 6211.703 kb on - strandat 6211.703 kb on - strandat 6211.703 kb on - strandat 6211.703 kb on - strandat 6211.703 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.709 kb on - strandat 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.886 kb on - strand, within QEN71_RS27940at 6211.898 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.111 kb on - strand, within QEN71_RS27940at 6212.138 kb on - strand, within QEN71_RS27940at 6212.138 kb on - strand, within QEN71_RS27940at 6212.138 kb on - strand, within QEN71_RS27940at 6212.138 kb on - strand, within QEN71_RS27940at 6212.138 kb on - strand, within QEN71_RS27940at 6212.138 kb on - strand, within QEN71_RS27940at 6212.138 kb on - strand, within QEN71_RS27940at 6212.138 kb on - strand, within QEN71_RS27940at 6212.399 kb on - strand, within QEN71_RS27940at 6212.948 kb on - strandat 6212.948 kb on - strandat 6212.948 kb on - strandat 6212.948 kb on - strandat 6212.948 kb on - strandat 6212.948 kb on - strandat 6212.948 kb on - strandat 6212.948 kb on - strandat 6212.977 kb on - strandat 6212.977 kb on - strandat 6213.002 kb on - strandat 6213.099 kb on - strandat 6213.099 kb on - strandat 6213.099 kb on - strandat 6213.099 kb on - strandat 6213.099 kb on - strandat 6213.099 kb on - strandat 6213.099 kb on - strandat 6213.125 kb on - strandat 6213.125 kb on - strandat 6213.128 kb on - strandat 6213.213 kb on - strandat 6213.213 kb on - strandat 6213.220 kb on - strandat 6213.220 kb on - strandat 6213.220 kb on - strandat 6213.220 kb on - strandat 6213.220 kb on - strandat 6213.245 kb on + strandat 6213.245 kb on + strandat 6213.378 kb on + strandat 6213.379 kb on - strandat 6213.379 kb on - strandat 6213.379 kb on - strandat 6213.379 kb on - strandat 6213.394 kb on + strandat 6213.394 kb on + strandat 6213.395 kb on - strandat 6213.395 kb on - strandat 6213.395 kb on - strandat 6213.395 kb on - strandat 6213.395 kb on - strandat 6213.405 kb on + strandat 6213.405 kb on + strandat 6213.405 kb on + strandat 6213.405 kb on + strandat 6213.405 kb on + strandat 6213.405 kb on + strandat 6213.405 kb on + strandat 6213.406 kb on - strandat 6213.494 kb on + strandat 6213.494 kb on + strandat 6213.494 kb on + strandat 6213.495 kb on - strandat 6213.495 kb on - strandat 6213.495 kb on - strandat 6213.508 kb on + strandat 6213.508 kb on + strandat 6213.508 kb on + strandat 6213.508 kb on + strandat 6213.508 kb on + strandat 6213.508 kb on + strandat 6213.508 kb on + strandat 6213.508 kb on + strandat 6213.508 kb on + strandat 6213.509 kb on - strandat 6213.509 kb on - strandat 6213.509 kb on - strandat 6213.509 kb on - strandat 6213.509 kb on - strandat 6213.509 kb on - strandat 6213.538 kb on + strandat 6213.566 kb on + strandat 6213.567 kb on - strandat 6213.567 kb on - strandat 6213.698 kb on + strand, within QEN71_RS27945at 6213.698 kb on + strand, within QEN71_RS27945at 6213.698 kb on + strand, within QEN71_RS27945at 6213.698 kb on + strand, within QEN71_RS27945at 6213.698 kb on + strand, within QEN71_RS27945at 6213.699 kb on - strand, within QEN71_RS27945at 6213.699 kb on - strand, within QEN71_RS27945at 6213.699 kb on - strand, within QEN71_RS27945at 6213.699 kb on - strand, within QEN71_RS27945at 6213.699 kb on - strand, within QEN71_RS27945at 6213.699 kb on - strand, within QEN71_RS27945at 6213.699 kb on - strand, within QEN71_RS27945at 6213.699 kb on - strand, within QEN71_RS27945at 6213.699 kb on - strand, within QEN71_RS27945at 6213.699 kb on - strand, within QEN71_RS27945at 6213.699 kb on - strand, within QEN71_RS27945at 6213.699 kb on - strand, within QEN71_RS27945at 6213.699 kb on - strand, within QEN71_RS27945at 6213.699 kb on - strand, within QEN71_RS27945at 6213.704 kb on + strand, within QEN71_RS27945at 6213.704 kb on + strand, within QEN71_RS27945at 6213.704 kb on + strand, within QEN71_RS27945at 6213.704 kb on + strand, within QEN71_RS27945at 6213.705 kb on - strand, within QEN71_RS27945at 6213.705 kb on - strand, within QEN71_RS27945at 6213.705 kb on - strand, within QEN71_RS27945at 6213.782 kb on + strand, within QEN71_RS27945at 6213.782 kb on + strand, within QEN71_RS27945at 6213.782 kb on + strand, within QEN71_RS27945at 6213.782 kb on + strand, within QEN71_RS27945at 6213.782 kb on + strand, within QEN71_RS27945at 6213.782 kb on + strand, within QEN71_RS27945at 6213.782 kb on + strand, within QEN71_RS27945at 6213.782 kb on + strand, within QEN71_RS27945at 6213.782 kb on + strand, within QEN71_RS27945at 6213.782 kb on + strand, within QEN71_RS27945at 6213.782 kb on + strand, within QEN71_RS27945at 6213.783 kb on - strand, within QEN71_RS27945at 6213.783 kb on - strand, within QEN71_RS27945at 6213.783 kb on - strand, within QEN71_RS27945at 6213.783 kb on - strand, within QEN71_RS27945at 6213.783 kb on - strand, within QEN71_RS27945at 6213.783 kb on - strand, within QEN71_RS27945at 6213.783 kb on - strand, within QEN71_RS27945at 6213.783 kb on - strand, within QEN71_RS27945at 6213.833 kb on + strand, within QEN71_RS27945

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample
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6,211,703 - -0.6
6,211,703 - +0.2
6,211,703 - +1.2
6,211,703 - +0.0
6,211,703 - -0.1
6,211,709 - +1.2
6,211,709 - -0.1
6,211,709 - -1.1
6,211,709 - -0.7
6,211,709 - +0.3
6,211,709 - -1.1
6,211,709 - +0.5
6,211,709 - -1.0
6,211,709 - -2.5
6,211,709 - +0.1
6,211,709 - -0.5
6,211,709 - -0.6
6,211,709 - -1.0
6,211,709 - -0.8
6,211,709 - -0.9
6,211,709 - +1.9
6,211,709 - +0.7
6,211,709 - +0.9
6,211,709 - +1.6
6,211,709 - +0.3
6,211,886 - QEN71_RS27940 0.15 -0.1
6,211,886 - QEN71_RS27940 0.15 -0.5
6,211,886 - QEN71_RS27940 0.15 -0.5
6,211,886 - QEN71_RS27940 0.15 -1.2
6,211,886 - QEN71_RS27940 0.15 -0.5
6,211,886 - QEN71_RS27940 0.15 -0.8
6,211,886 - QEN71_RS27940 0.15 +0.6
6,211,886 - QEN71_RS27940 0.15 -0.1
6,211,886 - QEN71_RS27940 0.15 -2.3
6,211,886 - QEN71_RS27940 0.15 -0.5
6,211,886 - QEN71_RS27940 0.15 -1.5
6,211,886 - QEN71_RS27940 0.15 -0.9
6,211,886 - QEN71_RS27940 0.15 -0.4
6,211,886 - QEN71_RS27940 0.15 +0.3
6,211,886 - QEN71_RS27940 0.15 -1.8
6,211,898 - QEN71_RS27940 0.16 +0.3
6,212,111 - QEN71_RS27940 0.35 -0.1
6,212,111 - QEN71_RS27940 0.35 -0.9
6,212,111 - QEN71_RS27940 0.35 -1.6
6,212,111 - QEN71_RS27940 0.35 -1.7
6,212,111 - QEN71_RS27940 0.35 -0.9
6,212,111 - QEN71_RS27940 0.35 -0.5
6,212,111 - QEN71_RS27940 0.35 -0.7
6,212,111 - QEN71_RS27940 0.35 -0.4
6,212,111 - QEN71_RS27940 0.35 -0.2
6,212,111 - QEN71_RS27940 0.35 +2.1
6,212,111 - QEN71_RS27940 0.35 -2.1
6,212,111 - QEN71_RS27940 0.35 -0.1
6,212,138 - QEN71_RS27940 0.37 +0.3
6,212,138 - QEN71_RS27940 0.37 -0.6
6,212,138 - QEN71_RS27940 0.37 +1.3
6,212,138 - QEN71_RS27940 0.37 +1.4
6,212,138 - QEN71_RS27940 0.37 +0.6
6,212,138 - QEN71_RS27940 0.37 -1.2
6,212,138 - QEN71_RS27940 0.37 -2.4
6,212,138 - QEN71_RS27940 0.37 -1.9
6,212,399 - QEN71_RS27940 0.60 -0.7
6,212,948 - +1.7
6,212,948 - -0.4
6,212,948 - +0.1
6,212,948 - +0.7
6,212,948 - -0.3
6,212,948 - +0.8
6,212,948 - -1.6
6,212,948 - +0.6
6,212,977 - -1.3
6,212,977 - -0.2
6,213,002 - +0.3
6,213,099 - -1.8
6,213,099 - +0.6
6,213,099 - +1.0
6,213,099 - +1.5
6,213,099 - -1.1
6,213,099 - +2.1
6,213,099 - +0.6
6,213,125 - +0.8
6,213,125 - +0.3
6,213,128 - -0.9
6,213,213 - +0.8
6,213,213 - -0.2
6,213,220 - -0.1
6,213,220 - +0.2
6,213,220 - +0.4
6,213,220 - +0.8
6,213,220 - -0.3
6,213,245 + -0.2
6,213,245 + -0.7
6,213,378 + -1.4
6,213,379 - -0.6
6,213,379 - +1.4
6,213,379 - -0.7
6,213,379 - +0.3
6,213,394 + -0.9
6,213,394 + -1.6
6,213,395 - +0.2
6,213,395 - +0.4
6,213,395 - +0.3
6,213,395 - -1.1
6,213,395 - -0.4
6,213,405 + +0.3
6,213,405 + -0.6
6,213,405 + -0.8
6,213,405 + +0.4
6,213,405 + +1.1
6,213,405 + +1.5
6,213,405 + +1.1
6,213,406 - +0.1
6,213,494 + -0.7
6,213,494 + -1.9
6,213,494 + -0.5
6,213,495 - -2.5
6,213,495 - -0.3
6,213,495 - -0.6
6,213,508 + +0.9
6,213,508 + +0.9
6,213,508 + +0.3
6,213,508 + +1.0
6,213,508 + +0.2
6,213,508 + -0.1
6,213,508 + +0.9
6,213,508 + -0.7
6,213,508 + -0.1
6,213,509 - -1.0
6,213,509 - -1.7
6,213,509 - -2.4
6,213,509 - -4.0
6,213,509 - -1.3
6,213,509 - -3.5
6,213,538 + -1.3
6,213,566 + -4.4
6,213,567 - -1.8
6,213,567 - -1.3
6,213,698 + QEN71_RS27945 0.11 +0.4
6,213,698 + QEN71_RS27945 0.11 -1.4
6,213,698 + QEN71_RS27945 0.11 -1.8
6,213,698 + QEN71_RS27945 0.11 -1.2
6,213,698 + QEN71_RS27945 0.11 -2.6
6,213,699 - QEN71_RS27945 0.11 -3.1
6,213,699 - QEN71_RS27945 0.11 -0.7
6,213,699 - QEN71_RS27945 0.11 -1.1
6,213,699 - QEN71_RS27945 0.11 -4.0
6,213,699 - QEN71_RS27945 0.11 -1.8
6,213,699 - QEN71_RS27945 0.11 -0.6
6,213,699 - QEN71_RS27945 0.11 -1.5
6,213,699 - QEN71_RS27945 0.11 -1.1
6,213,699 - QEN71_RS27945 0.11 -2.7
6,213,699 - QEN71_RS27945 0.11 -3.3
6,213,699 - QEN71_RS27945 0.11 -2.1
6,213,699 - QEN71_RS27945 0.11 -0.7
6,213,699 - QEN71_RS27945 0.11 -1.4
6,213,699 - QEN71_RS27945 0.11 -0.9
6,213,704 + QEN71_RS27945 0.11 -1.4
6,213,704 + QEN71_RS27945 0.11 -1.6
6,213,704 + QEN71_RS27945 0.11 -1.1
6,213,704 + QEN71_RS27945 0.11 -0.7
6,213,705 - QEN71_RS27945 0.11 -2.2
6,213,705 - QEN71_RS27945 0.11 -2.7
6,213,705 - QEN71_RS27945 0.11 -2.3
6,213,782 + QEN71_RS27945 0.16 -1.0
6,213,782 + QEN71_RS27945 0.16 -0.3
6,213,782 + QEN71_RS27945 0.16 +0.6
6,213,782 + QEN71_RS27945 0.16 -1.9
6,213,782 + QEN71_RS27945 0.16 -1.5
6,213,782 + QEN71_RS27945 0.16 -2.7
6,213,782 + QEN71_RS27945 0.16 -0.5
6,213,782 + QEN71_RS27945 0.16 -1.9
6,213,782 + QEN71_RS27945 0.16 -1.8
6,213,782 + QEN71_RS27945 0.16 -1.1
6,213,782 + QEN71_RS27945 0.16 -2.3
6,213,783 - QEN71_RS27945 0.16 -0.8
6,213,783 - QEN71_RS27945 0.16 -2.4
6,213,783 - QEN71_RS27945 0.16 -1.0
6,213,783 - QEN71_RS27945 0.16 -2.3
6,213,783 - QEN71_RS27945 0.16 -2.3
6,213,783 - QEN71_RS27945 0.16 +0.1
6,213,783 - QEN71_RS27945 0.16 -1.3
6,213,783 - QEN71_RS27945 0.16 -1.7
6,213,833 + QEN71_RS27945 0.19 -1.0

Or see this region's nucleotide sequence