Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS21795

Experiment: Motility_outer_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS21790 and QEN71_RS21795 are separated by 253 nucleotidesQEN71_RS21795 and QEN71_RS21800 are separated by 118 nucleotidesQEN71_RS21800 and QEN71_RS21805 are separated by 51 nucleotides QEN71_RS21790: QEN71_RS21790 - alpha,alpha-trehalose-phosphate synthase (UDP-forming), at 4,834,355 to 4,835,785 _RS21790 QEN71_RS21795: QEN71_RS21795 - Rap1a/Tai family immunity protein, at 4,836,039 to 4,836,395 _RS21795 QEN71_RS21800: QEN71_RS21800 - ankyrin repeat domain-containing protein, at 4,836,514 to 4,837,260 _RS21800 QEN71_RS21805: QEN71_RS21805 - TatD family hydrolase, at 4,837,312 to 4,838,103 _RS21805 Position (kb) 4836 4837Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4835.187 kb on + strand, within QEN71_RS21790at 4835.187 kb on + strand, within QEN71_RS21790at 4835.238 kb on + strand, within QEN71_RS21790at 4835.238 kb on + strand, within QEN71_RS21790at 4835.238 kb on + strand, within QEN71_RS21790at 4835.238 kb on + strand, within QEN71_RS21790at 4835.238 kb on + strand, within QEN71_RS21790at 4835.238 kb on + strand, within QEN71_RS21790at 4835.239 kb on - strand, within QEN71_RS21790at 4835.239 kb on - strand, within QEN71_RS21790at 4835.382 kb on + strand, within QEN71_RS21790at 4835.382 kb on + strand, within QEN71_RS21790at 4835.383 kb on - strand, within QEN71_RS21790at 4835.469 kb on + strand, within QEN71_RS21790at 4835.469 kb on + strand, within QEN71_RS21790at 4835.470 kb on - strand, within QEN71_RS21790at 4835.470 kb on - strand, within QEN71_RS21790at 4835.470 kb on - strand, within QEN71_RS21790at 4835.470 kb on - strand, within QEN71_RS21790at 4835.470 kb on - strand, within QEN71_RS21790at 4835.470 kb on - strand, within QEN71_RS21790at 4835.470 kb on - strand, within QEN71_RS21790at 4835.470 kb on - strand, within QEN71_RS21790at 4835.470 kb on - strand, within QEN71_RS21790at 4835.547 kb on + strand, within QEN71_RS21790at 4835.548 kb on - strand, within QEN71_RS21790at 4835.548 kb on - strand, within QEN71_RS21790at 4835.550 kb on + strand, within QEN71_RS21790at 4835.551 kb on - strand, within QEN71_RS21790at 4835.559 kb on + strand, within QEN71_RS21790at 4835.559 kb on + strand, within QEN71_RS21790at 4835.559 kb on + strand, within QEN71_RS21790at 4835.560 kb on - strand, within QEN71_RS21790at 4835.560 kb on - strand, within QEN71_RS21790at 4835.560 kb on - strand, within QEN71_RS21790at 4835.708 kb on + strandat 4835.914 kb on + strandat 4835.933 kb on + strandat 4835.934 kb on - strandat 4835.934 kb on - strandat 4835.976 kb on - strandat 4835.976 kb on - strandat 4836.030 kb on + strandat 4836.101 kb on + strand, within QEN71_RS21795at 4836.102 kb on - strand, within QEN71_RS21795at 4836.103 kb on + strand, within QEN71_RS21795at 4836.103 kb on + strand, within QEN71_RS21795at 4836.103 kb on + strand, within QEN71_RS21795at 4836.103 kb on + strand, within QEN71_RS21795at 4836.103 kb on + strand, within QEN71_RS21795at 4836.103 kb on + strand, within QEN71_RS21795at 4836.104 kb on - strand, within QEN71_RS21795at 4836.104 kb on - strand, within QEN71_RS21795at 4836.133 kb on + strand, within QEN71_RS21795at 4836.133 kb on + strand, within QEN71_RS21795at 4836.133 kb on + strand, within QEN71_RS21795at 4836.133 kb on + strand, within QEN71_RS21795at 4836.133 kb on + strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.134 kb on - strand, within QEN71_RS21795at 4836.190 kb on + strand, within QEN71_RS21795at 4836.191 kb on - strand, within QEN71_RS21795at 4836.191 kb on - strand, within QEN71_RS21795at 4836.267 kb on - strand, within QEN71_RS21795at 4836.267 kb on - strand, within QEN71_RS21795at 4836.268 kb on + strand, within QEN71_RS21795at 4836.268 kb on + strand, within QEN71_RS21795at 4836.268 kb on + strand, within QEN71_RS21795at 4836.269 kb on - strand, within QEN71_RS21795at 4836.269 kb on - strand, within QEN71_RS21795at 4836.269 kb on - strand, within QEN71_RS21795at 4836.269 kb on - strand, within QEN71_RS21795at 4836.269 kb on - strand, within QEN71_RS21795at 4836.269 kb on - strand, within QEN71_RS21795at 4836.269 kb on - strand, within QEN71_RS21795at 4836.269 kb on - strand, within QEN71_RS21795at 4836.284 kb on + strand, within QEN71_RS21795at 4836.515 kb on + strandat 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.618 kb on - strand, within QEN71_RS21800at 4836.618 kb on - strand, within QEN71_RS21800at 4836.618 kb on - strand, within QEN71_RS21800at 4836.618 kb on - strand, within QEN71_RS21800at 4836.618 kb on - strand, within QEN71_RS21800at 4836.618 kb on - strand, within QEN71_RS21800at 4836.768 kb on + strand, within QEN71_RS21800at 4836.768 kb on + strand, within QEN71_RS21800at 4836.768 kb on + strand, within QEN71_RS21800at 4836.769 kb on - strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.827 kb on + strand, within QEN71_RS21800at 4836.827 kb on + strand, within QEN71_RS21800at 4836.827 kb on + strand, within QEN71_RS21800at 4836.828 kb on - strand, within QEN71_RS21800at 4836.828 kb on - strand, within QEN71_RS21800at 4836.828 kb on - strand, within QEN71_RS21800at 4837.261 kb on - strandat 4837.295 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample
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4,835,187 + QEN71_RS21790 0.58 -0.5
4,835,187 + QEN71_RS21790 0.58 +0.9
4,835,238 + QEN71_RS21790 0.62 -0.9
4,835,238 + QEN71_RS21790 0.62 +0.4
4,835,238 + QEN71_RS21790 0.62 +0.5
4,835,238 + QEN71_RS21790 0.62 -0.3
4,835,238 + QEN71_RS21790 0.62 +0.4
4,835,238 + QEN71_RS21790 0.62 +1.7
4,835,239 - QEN71_RS21790 0.62 -3.3
4,835,239 - QEN71_RS21790 0.62 +0.5
4,835,382 + QEN71_RS21790 0.72 +0.9
4,835,382 + QEN71_RS21790 0.72 -1.1
4,835,383 - QEN71_RS21790 0.72 -2.3
4,835,469 + QEN71_RS21790 0.78 +0.3
4,835,469 + QEN71_RS21790 0.78 -0.3
4,835,470 - QEN71_RS21790 0.78 +1.2
4,835,470 - QEN71_RS21790 0.78 +0.5
4,835,470 - QEN71_RS21790 0.78 +0.2
4,835,470 - QEN71_RS21790 0.78 +1.8
4,835,470 - QEN71_RS21790 0.78 -0.3
4,835,470 - QEN71_RS21790 0.78 +1.1
4,835,470 - QEN71_RS21790 0.78 +0.1
4,835,470 - QEN71_RS21790 0.78 -0.3
4,835,470 - QEN71_RS21790 0.78 -1.9
4,835,547 + QEN71_RS21790 0.83 -1.1
4,835,548 - QEN71_RS21790 0.83 -0.2
4,835,548 - QEN71_RS21790 0.83 +0.7
4,835,550 + QEN71_RS21790 0.84 -0.4
4,835,551 - QEN71_RS21790 0.84 -0.3
4,835,559 + QEN71_RS21790 0.84 -0.2
4,835,559 + QEN71_RS21790 0.84 +1.5
4,835,559 + QEN71_RS21790 0.84 +0.9
4,835,560 - QEN71_RS21790 0.84 +0.1
4,835,560 - QEN71_RS21790 0.84 -0.6
4,835,560 - QEN71_RS21790 0.84 -2.0
4,835,708 + +0.1
4,835,914 + -1.8
4,835,933 + -0.1
4,835,934 - -1.3
4,835,934 - +0.6
4,835,976 - -0.1
4,835,976 - -0.1
4,836,030 + -0.7
4,836,101 + QEN71_RS21795 0.17 +0.5
4,836,102 - QEN71_RS21795 0.18 +0.9
4,836,103 + QEN71_RS21795 0.18 -0.5
4,836,103 + QEN71_RS21795 0.18 +1.2
4,836,103 + QEN71_RS21795 0.18 -0.4
4,836,103 + QEN71_RS21795 0.18 -1.1
4,836,103 + QEN71_RS21795 0.18 +0.0
4,836,103 + QEN71_RS21795 0.18 -0.3
4,836,104 - QEN71_RS21795 0.18 -1.9
4,836,104 - QEN71_RS21795 0.18 -0.2
4,836,133 + QEN71_RS21795 0.26 -1.2
4,836,133 + QEN71_RS21795 0.26 +0.5
4,836,133 + QEN71_RS21795 0.26 -0.4
4,836,133 + QEN71_RS21795 0.26 +1.6
4,836,133 + QEN71_RS21795 0.26 -1.6
4,836,134 - QEN71_RS21795 0.27 -0.1
4,836,134 - QEN71_RS21795 0.27 +0.1
4,836,134 - QEN71_RS21795 0.27 +0.3
4,836,134 - QEN71_RS21795 0.27 +1.1
4,836,134 - QEN71_RS21795 0.27 -0.3
4,836,134 - QEN71_RS21795 0.27 -0.9
4,836,134 - QEN71_RS21795 0.27 +0.1
4,836,134 - QEN71_RS21795 0.27 +0.1
4,836,134 - QEN71_RS21795 0.27 +0.5
4,836,134 - QEN71_RS21795 0.27 +1.3
4,836,134 - QEN71_RS21795 0.27 -0.5
4,836,190 + QEN71_RS21795 0.42 +0.5
4,836,191 - QEN71_RS21795 0.43 +1.2
4,836,191 - QEN71_RS21795 0.43 +1.1
4,836,267 - QEN71_RS21795 0.64 -0.1
4,836,267 - QEN71_RS21795 0.64 -1.1
4,836,268 + QEN71_RS21795 0.64 -0.2
4,836,268 + QEN71_RS21795 0.64 +0.7
4,836,268 + QEN71_RS21795 0.64 -0.4
4,836,269 - QEN71_RS21795 0.64 -0.3
4,836,269 - QEN71_RS21795 0.64 +0.3
4,836,269 - QEN71_RS21795 0.64 -3.0
4,836,269 - QEN71_RS21795 0.64 +1.1
4,836,269 - QEN71_RS21795 0.64 +1.1
4,836,269 - QEN71_RS21795 0.64 +0.5
4,836,269 - QEN71_RS21795 0.64 -2.1
4,836,269 - QEN71_RS21795 0.64 -0.9
4,836,284 + QEN71_RS21795 0.69 -1.8
4,836,515 + -0.2
4,836,617 + QEN71_RS21800 0.14 -0.8
4,836,617 + QEN71_RS21800 0.14 -1.0
4,836,617 + QEN71_RS21800 0.14 +1.1
4,836,617 + QEN71_RS21800 0.14 -1.6
4,836,617 + QEN71_RS21800 0.14 -0.9
4,836,617 + QEN71_RS21800 0.14 -0.3
4,836,617 + QEN71_RS21800 0.14 -1.1
4,836,617 + QEN71_RS21800 0.14 -1.6
4,836,618 - QEN71_RS21800 0.14 -0.6
4,836,618 - QEN71_RS21800 0.14 -0.3
4,836,618 - QEN71_RS21800 0.14 -0.6
4,836,618 - QEN71_RS21800 0.14 -0.8
4,836,618 - QEN71_RS21800 0.14 -0.3
4,836,618 - QEN71_RS21800 0.14 -1.3
4,836,768 + QEN71_RS21800 0.34 -1.3
4,836,768 + QEN71_RS21800 0.34 -3.5
4,836,768 + QEN71_RS21800 0.34 -3.0
4,836,769 - QEN71_RS21800 0.34 -1.8
4,836,770 + QEN71_RS21800 0.34 -0.4
4,836,770 + QEN71_RS21800 0.34 -3.8
4,836,770 + QEN71_RS21800 0.34 -4.0
4,836,770 + QEN71_RS21800 0.34 -3.1
4,836,770 + QEN71_RS21800 0.34 -1.3
4,836,770 + QEN71_RS21800 0.34 -3.6
4,836,770 + QEN71_RS21800 0.34 -2.2
4,836,770 + QEN71_RS21800 0.34 -3.6
4,836,770 + QEN71_RS21800 0.34 -0.1
4,836,770 + QEN71_RS21800 0.34 -1.3
4,836,770 + QEN71_RS21800 0.34 -1.2
4,836,770 + QEN71_RS21800 0.34 -0.7
4,836,771 - QEN71_RS21800 0.34 -0.7
4,836,771 - QEN71_RS21800 0.34 -1.0
4,836,771 - QEN71_RS21800 0.34 -3.9
4,836,771 - QEN71_RS21800 0.34 -4.6
4,836,771 - QEN71_RS21800 0.34 -0.5
4,836,771 - QEN71_RS21800 0.34 -2.0
4,836,771 - QEN71_RS21800 0.34 -2.0
4,836,771 - QEN71_RS21800 0.34 -0.9
4,836,771 - QEN71_RS21800 0.34 -2.3
4,836,827 + QEN71_RS21800 0.42 -3.4
4,836,827 + QEN71_RS21800 0.42 -1.1
4,836,827 + QEN71_RS21800 0.42 -2.8
4,836,828 - QEN71_RS21800 0.42 -1.9
4,836,828 - QEN71_RS21800 0.42 -2.3
4,836,828 - QEN71_RS21800 0.42 -2.7
4,837,261 - +0.3
4,837,295 - +0.4

Or see this region's nucleotide sequence