Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS12585

Experiment: Motility_outer_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS12580 and QEN71_RS12585 are separated by 6 nucleotidesQEN71_RS12585 and QEN71_RS12590 are separated by 70 nucleotidesQEN71_RS12590 and QEN71_RS12595 are separated by 446 nucleotides QEN71_RS12580: QEN71_RS12580 - IlvD/Edd family dehydratase, at 2,814,833 to 2,816,545 _RS12580 QEN71_RS12585: QEN71_RS12585 - dihydrodipicolinate synthase family protein, at 2,816,552 to 2,817,484 _RS12585 QEN71_RS12590: QEN71_RS12590 - hypothetical protein, at 2,817,555 to 2,817,776 _RS12590 QEN71_RS12595: QEN71_RS12595 - response regulator transcription factor, at 2,818,223 to 2,818,876 _RS12595 Position (kb) 2816 2817 2818Strain fitness (log2 ratio) -1 0 1 2 3at 2815.585 kb on + strand, within QEN71_RS12580at 2815.761 kb on - strand, within QEN71_RS12580at 2815.782 kb on - strand, within QEN71_RS12580at 2815.881 kb on + strand, within QEN71_RS12580at 2815.881 kb on + strand, within QEN71_RS12580at 2815.881 kb on + strand, within QEN71_RS12580at 2815.881 kb on + strand, within QEN71_RS12580at 2815.882 kb on - strand, within QEN71_RS12580at 2816.258 kb on + strand, within QEN71_RS12580at 2816.466 kb on + strandat 2816.467 kb on - strandat 2816.690 kb on - strand, within QEN71_RS12585at 2816.847 kb on - strand, within QEN71_RS12585at 2816.919 kb on - strand, within QEN71_RS12585at 2817.097 kb on - strand, within QEN71_RS12585at 2817.288 kb on + strand, within QEN71_RS12585at 2817.289 kb on - strand, within QEN71_RS12585at 2818.101 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample
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2,815,585 + QEN71_RS12580 0.44 -0.3
2,815,761 - QEN71_RS12580 0.54 +0.4
2,815,782 - QEN71_RS12580 0.55 +0.6
2,815,881 + QEN71_RS12580 0.61 -0.9
2,815,881 + QEN71_RS12580 0.61 -0.5
2,815,881 + QEN71_RS12580 0.61 -0.5
2,815,881 + QEN71_RS12580 0.61 +1.6
2,815,882 - QEN71_RS12580 0.61 +0.2
2,816,258 + QEN71_RS12580 0.83 -0.9
2,816,466 + -0.4
2,816,467 - +1.0
2,816,690 - QEN71_RS12585 0.15 +0.6
2,816,847 - QEN71_RS12585 0.32 +3.2
2,816,919 - QEN71_RS12585 0.39 +0.2
2,817,097 - QEN71_RS12585 0.58 -0.9
2,817,288 + QEN71_RS12585 0.79 -0.4
2,817,289 - QEN71_RS12585 0.79 -0.1
2,818,101 + -0.9

Or see this region's nucleotide sequence