Experiment: Motility_outer_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS10180 and QEN71_RS10185 are separated by 85 nucleotides QEN71_RS10185 and QEN71_RS10190 overlap by 1 nucleotides QEN71_RS10190 and QEN71_RS10195 overlap by 8 nucleotides QEN71_RS10195 and QEN71_RS10200 overlap by 1 nucleotides
QEN71_RS10180: QEN71_RS10180 - ABC transporter substrate-binding protein, at 2,269,722 to 2,271,464
_RS10180
QEN71_RS10185: QEN71_RS10185 - DUF2160 domain-containing protein, at 2,271,550 to 2,271,831
_RS10185
QEN71_RS10190: QEN71_RS10190 - carbohydrate ABC transporter permease, at 2,271,831 to 2,272,643
_RS10190
QEN71_RS10195: QEN71_RS10195 - sugar ABC transporter permease, at 2,272,636 to 2,273,529
_RS10195
QEN71_RS10200: QEN71_RS10200 - ABC transporter ATP-binding protein, at 2,273,529 to 2,274,638
_RS10200
Position (kb)
2271
2272
2273 Strain fitness (log2 ratio)
-2
-1
0
1 at 2271.014 kb on - strand, within QEN71_RS10180 at 2271.040 kb on + strand, within QEN71_RS10180 at 2271.089 kb on - strand, within QEN71_RS10180 at 2271.214 kb on + strand, within QEN71_RS10180 at 2271.214 kb on + strand, within QEN71_RS10180 at 2271.215 kb on - strand, within QEN71_RS10180 at 2271.215 kb on - strand, within QEN71_RS10180 at 2271.250 kb on - strand, within QEN71_RS10180 at 2271.250 kb on - strand, within QEN71_RS10180 at 2271.250 kb on - strand, within QEN71_RS10180 at 2271.491 kb on - strand at 2271.552 kb on - strand at 2271.816 kb on - strand at 2271.884 kb on + strand at 2272.218 kb on - strand, within QEN71_RS10190 at 2272.241 kb on - strand, within QEN71_RS10190 at 2272.426 kb on + strand, within QEN71_RS10190 at 2272.427 kb on - strand, within QEN71_RS10190 at 2272.597 kb on + strand at 2272.608 kb on + strand at 2272.698 kb on - strand at 2272.796 kb on + strand, within QEN71_RS10195 at 2272.934 kb on + strand, within QEN71_RS10195 at 2272.983 kb on - strand, within QEN71_RS10195 at 2273.016 kb on - strand, within QEN71_RS10195 at 2273.099 kb on + strand, within QEN71_RS10195 at 2273.099 kb on + strand, within QEN71_RS10195 at 2273.106 kb on - strand, within QEN71_RS10195 at 2273.185 kb on + strand, within QEN71_RS10195 at 2273.185 kb on + strand, within QEN71_RS10195 at 2273.429 kb on + strand, within QEN71_RS10195 at 2273.482 kb on + strand at 2273.640 kb on - strand, within QEN71_RS10200
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample remove 2,271,014 - QEN71_RS10180 0.74 -0.9 2,271,040 + QEN71_RS10180 0.76 -0.1 2,271,089 - QEN71_RS10180 0.78 +0.2 2,271,214 + QEN71_RS10180 0.86 +0.5 2,271,214 + QEN71_RS10180 0.86 +0.5 2,271,215 - QEN71_RS10180 0.86 -0.2 2,271,215 - QEN71_RS10180 0.86 -2.5 2,271,250 - QEN71_RS10180 0.88 +0.9 2,271,250 - QEN71_RS10180 0.88 +0.7 2,271,250 - QEN71_RS10180 0.88 -0.4 2,271,491 - -0.3 2,271,552 - -0.2 2,271,816 - -0.3 2,271,884 + -0.1 2,272,218 - QEN71_RS10190 0.48 -0.5 2,272,241 - QEN71_RS10190 0.50 -0.7 2,272,426 + QEN71_RS10190 0.73 -2.0 2,272,427 - QEN71_RS10190 0.73 -0.4 2,272,597 + -0.7 2,272,608 + +0.2 2,272,698 - -0.7 2,272,796 + QEN71_RS10195 0.18 -0.3 2,272,934 + QEN71_RS10195 0.33 +0.2 2,272,983 - QEN71_RS10195 0.39 -1.1 2,273,016 - QEN71_RS10195 0.43 +0.2 2,273,099 + QEN71_RS10195 0.52 -0.7 2,273,099 + QEN71_RS10195 0.52 +0.5 2,273,106 - QEN71_RS10195 0.53 -1.5 2,273,185 + QEN71_RS10195 0.61 -0.6 2,273,185 + QEN71_RS10195 0.61 +1.0 2,273,429 + QEN71_RS10195 0.89 +0.5 2,273,482 + +1.1 2,273,640 - QEN71_RS10200 0.10 +0.3
Or see this region's nucleotide sequence