Experiment: Motility_outer_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS07985 and QEN71_RS07990 are separated by 721 nucleotides QEN71_RS07990 and QEN71_RS07995 are separated by 193 nucleotides
QEN71_RS07985: QEN71_RS07985 - FAD-binding oxidoreductase, at 1,769,111 to 1,770,451
_RS07985
QEN71_RS07990: QEN71_RS07990 - GntR family transcriptional regulator, at 1,771,173 to 1,771,913
_RS07990
QEN71_RS07995: QEN71_RS07995 - proline racemase family protein, at 1,772,107 to 1,773,114
_RS07995
Position (kb)
1771
1772 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1770.190 kb on + strand, within QEN71_RS07985 at 1770.190 kb on + strand, within QEN71_RS07985 at 1770.191 kb on - strand, within QEN71_RS07985 at 1770.346 kb on + strand at 1770.346 kb on + strand at 1770.346 kb on + strand at 1770.347 kb on - strand at 1770.347 kb on - strand at 1770.424 kb on + strand at 1770.424 kb on + strand at 1770.424 kb on + strand at 1770.424 kb on + strand at 1770.424 kb on + strand at 1770.425 kb on - strand at 1770.425 kb on - strand at 1770.425 kb on - strand at 1770.425 kb on - strand at 1770.425 kb on - strand at 1770.442 kb on + strand at 1770.442 kb on + strand at 1770.442 kb on + strand at 1770.442 kb on + strand at 1770.442 kb on + strand at 1770.442 kb on + strand at 1770.443 kb on - strand at 1770.443 kb on - strand at 1770.450 kb on - strand at 1770.450 kb on - strand at 1770.450 kb on - strand at 1770.450 kb on - strand at 1770.450 kb on - strand at 1770.450 kb on - strand at 1770.450 kb on - strand at 1770.528 kb on + strand at 1770.529 kb on - strand at 1770.529 kb on - strand at 1770.529 kb on - strand at 1770.529 kb on - strand at 1770.529 kb on - strand at 1770.721 kb on - strand at 1770.825 kb on - strand at 1770.882 kb on - strand at 1771.046 kb on + strand at 1771.174 kb on + strand at 1771.178 kb on + strand at 1771.178 kb on + strand at 1771.179 kb on - strand at 1771.222 kb on + strand at 1771.223 kb on - strand at 1771.223 kb on - strand at 1771.223 kb on - strand at 1771.256 kb on + strand, within QEN71_RS07990 at 1771.264 kb on + strand, within QEN71_RS07990 at 1771.265 kb on - strand, within QEN71_RS07990 at 1771.265 kb on - strand, within QEN71_RS07990 at 1771.288 kb on + strand, within QEN71_RS07990 at 1771.288 kb on + strand, within QEN71_RS07990 at 1771.288 kb on + strand, within QEN71_RS07990 at 1771.289 kb on - strand, within QEN71_RS07990 at 1771.289 kb on - strand, within QEN71_RS07990 at 1771.362 kb on - strand, within QEN71_RS07990 at 1771.449 kb on + strand, within QEN71_RS07990 at 1771.504 kb on + strand, within QEN71_RS07990 at 1771.505 kb on - strand, within QEN71_RS07990 at 1771.505 kb on - strand, within QEN71_RS07990 at 1771.505 kb on - strand, within QEN71_RS07990 at 1771.505 kb on - strand, within QEN71_RS07990 at 1771.505 kb on - strand, within QEN71_RS07990 at 1771.505 kb on - strand, within QEN71_RS07990 at 1771.539 kb on - strand, within QEN71_RS07990 at 1771.539 kb on - strand, within QEN71_RS07990 at 1771.678 kb on + strand, within QEN71_RS07990 at 1771.678 kb on + strand, within QEN71_RS07990 at 1771.678 kb on + strand, within QEN71_RS07990 at 1771.678 kb on + strand, within QEN71_RS07990 at 1771.678 kb on + strand, within QEN71_RS07990 at 1771.679 kb on - strand, within QEN71_RS07990 at 1771.679 kb on - strand, within QEN71_RS07990 at 1771.679 kb on - strand, within QEN71_RS07990 at 1771.679 kb on - strand, within QEN71_RS07990 at 1771.679 kb on - strand, within QEN71_RS07990 at 1771.679 kb on - strand, within QEN71_RS07990 at 1771.679 kb on - strand, within QEN71_RS07990 at 1771.679 kb on - strand, within QEN71_RS07990 at 1771.701 kb on - strand, within QEN71_RS07990 at 1771.861 kb on + strand at 1771.861 kb on + strand at 1771.862 kb on - strand at 1771.862 kb on - strand at 1771.862 kb on - strand at 1771.914 kb on - strand at 1772.003 kb on + strand at 1772.130 kb on + strand at 1772.130 kb on + strand at 1772.135 kb on + strand at 1772.136 kb on - strand at 1772.136 kb on - strand at 1772.136 kb on - strand at 1772.293 kb on + strand, within QEN71_RS07995 at 1772.293 kb on + strand, within QEN71_RS07995 at 1772.293 kb on + strand, within QEN71_RS07995 at 1772.294 kb on - strand, within QEN71_RS07995 at 1772.294 kb on - strand, within QEN71_RS07995 at 1772.294 kb on - strand, within QEN71_RS07995 at 1772.303 kb on - strand, within QEN71_RS07995 at 1772.365 kb on + strand, within QEN71_RS07995 at 1772.365 kb on + strand, within QEN71_RS07995 at 1772.366 kb on - strand, within QEN71_RS07995 at 1772.366 kb on - strand, within QEN71_RS07995 at 1772.629 kb on + strand, within QEN71_RS07995 at 1772.629 kb on + strand, within QEN71_RS07995 at 1772.629 kb on + strand, within QEN71_RS07995 at 1772.630 kb on - strand, within QEN71_RS07995 at 1772.630 kb on - strand, within QEN71_RS07995 at 1772.630 kb on - strand, within QEN71_RS07995 at 1772.630 kb on - strand, within QEN71_RS07995 at 1772.635 kb on + strand, within QEN71_RS07995 at 1772.636 kb on - strand, within QEN71_RS07995 at 1772.636 kb on - strand, within QEN71_RS07995 at 1772.636 kb on - strand, within QEN71_RS07995 at 1772.636 kb on - strand, within QEN71_RS07995 at 1772.636 kb on - strand, within QEN71_RS07995 at 1772.636 kb on - strand, within QEN71_RS07995 at 1772.776 kb on + strand, within QEN71_RS07995 at 1772.776 kb on + strand, within QEN71_RS07995 at 1772.776 kb on + strand, within QEN71_RS07995 at 1772.776 kb on + strand, within QEN71_RS07995 at 1772.776 kb on + strand, within QEN71_RS07995 at 1772.776 kb on + strand, within QEN71_RS07995 at 1772.776 kb on + strand, within QEN71_RS07995 at 1772.776 kb on + strand, within QEN71_RS07995 at 1772.777 kb on - strand, within QEN71_RS07995 at 1772.777 kb on - strand, within QEN71_RS07995 at 1772.777 kb on - strand, within QEN71_RS07995 at 1772.777 kb on - strand, within QEN71_RS07995 at 1772.777 kb on - strand, within QEN71_RS07995 at 1772.905 kb on + strand, within QEN71_RS07995
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample remove 1,770,190 + QEN71_RS07985 0.80 -0.1 1,770,190 + QEN71_RS07985 0.80 -0.0 1,770,191 - QEN71_RS07985 0.81 +0.2 1,770,346 + -1.0 1,770,346 + -0.4 1,770,346 + +0.3 1,770,347 - -0.4 1,770,347 - +0.1 1,770,424 + +0.9 1,770,424 + +0.0 1,770,424 + -0.1 1,770,424 + +1.1 1,770,424 + +0.6 1,770,425 - +0.3 1,770,425 - -0.2 1,770,425 - -0.6 1,770,425 - -0.6 1,770,425 - -0.8 1,770,442 + -1.6 1,770,442 + -1.5 1,770,442 + -2.4 1,770,442 + +1.5 1,770,442 + -0.7 1,770,442 + +0.5 1,770,443 - -1.9 1,770,443 - +0.4 1,770,450 - -0.7 1,770,450 - -0.1 1,770,450 - +1.6 1,770,450 - -0.5 1,770,450 - +0.6 1,770,450 - -0.9 1,770,450 - -1.5 1,770,528 + -0.1 1,770,529 - -0.5 1,770,529 - -0.1 1,770,529 - -1.0 1,770,529 - -0.3 1,770,529 - +0.7 1,770,721 - -0.3 1,770,825 - +0.0 1,770,882 - +0.7 1,771,046 + -1.7 1,771,174 + -0.7 1,771,178 + -0.3 1,771,178 + +1.9 1,771,179 - -0.4 1,771,222 + +0.3 1,771,223 - +0.2 1,771,223 - -0.6 1,771,223 - +0.1 1,771,256 + QEN71_RS07990 0.11 +0.2 1,771,264 + QEN71_RS07990 0.12 -0.7 1,771,265 - QEN71_RS07990 0.12 +0.1 1,771,265 - QEN71_RS07990 0.12 -0.7 1,771,288 + QEN71_RS07990 0.16 -1.5 1,771,288 + QEN71_RS07990 0.16 -1.1 1,771,288 + QEN71_RS07990 0.16 +0.6 1,771,289 - QEN71_RS07990 0.16 +0.8 1,771,289 - QEN71_RS07990 0.16 -0.1 1,771,362 - QEN71_RS07990 0.26 -0.9 1,771,449 + QEN71_RS07990 0.37 +0.1 1,771,504 + QEN71_RS07990 0.45 -1.1 1,771,505 - QEN71_RS07990 0.45 +1.4 1,771,505 - QEN71_RS07990 0.45 +1.1 1,771,505 - QEN71_RS07990 0.45 -0.2 1,771,505 - QEN71_RS07990 0.45 -0.4 1,771,505 - QEN71_RS07990 0.45 -1.0 1,771,505 - QEN71_RS07990 0.45 -0.4 1,771,539 - QEN71_RS07990 0.49 +0.2 1,771,539 - QEN71_RS07990 0.49 -2.8 1,771,678 + QEN71_RS07990 0.68 +2.8 1,771,678 + QEN71_RS07990 0.68 -1.4 1,771,678 + QEN71_RS07990 0.68 -0.2 1,771,678 + QEN71_RS07990 0.68 -0.1 1,771,678 + QEN71_RS07990 0.68 -0.4 1,771,679 - QEN71_RS07990 0.68 -2.8 1,771,679 - QEN71_RS07990 0.68 -0.0 1,771,679 - QEN71_RS07990 0.68 -0.7 1,771,679 - QEN71_RS07990 0.68 +1.0 1,771,679 - QEN71_RS07990 0.68 -0.0 1,771,679 - QEN71_RS07990 0.68 -0.7 1,771,679 - QEN71_RS07990 0.68 -1.1 1,771,679 - QEN71_RS07990 0.68 -1.7 1,771,701 - QEN71_RS07990 0.71 -0.9 1,771,861 + +0.6 1,771,861 + -0.7 1,771,862 - -0.7 1,771,862 - +1.0 1,771,862 - -0.4 1,771,914 - -0.4 1,772,003 + +1.2 1,772,130 + -0.7 1,772,130 + -0.8 1,772,135 + -0.1 1,772,136 - +0.0 1,772,136 - -0.1 1,772,136 - +0.5 1,772,293 + QEN71_RS07995 0.18 +0.1 1,772,293 + QEN71_RS07995 0.18 -0.2 1,772,293 + QEN71_RS07995 0.18 +0.6 1,772,294 - QEN71_RS07995 0.19 +0.8 1,772,294 - QEN71_RS07995 0.19 -1.2 1,772,294 - QEN71_RS07995 0.19 +1.8 1,772,303 - QEN71_RS07995 0.19 +0.9 1,772,365 + QEN71_RS07995 0.26 +0.9 1,772,365 + QEN71_RS07995 0.26 -0.9 1,772,366 - QEN71_RS07995 0.26 +0.5 1,772,366 - QEN71_RS07995 0.26 -0.1 1,772,629 + QEN71_RS07995 0.52 -1.4 1,772,629 + QEN71_RS07995 0.52 -1.1 1,772,629 + QEN71_RS07995 0.52 +0.3 1,772,630 - QEN71_RS07995 0.52 +0.7 1,772,630 - QEN71_RS07995 0.52 -0.7 1,772,630 - QEN71_RS07995 0.52 -0.3 1,772,630 - QEN71_RS07995 0.52 -0.6 1,772,635 + QEN71_RS07995 0.52 +0.4 1,772,636 - QEN71_RS07995 0.52 +1.9 1,772,636 - QEN71_RS07995 0.52 -0.8 1,772,636 - QEN71_RS07995 0.52 +0.3 1,772,636 - QEN71_RS07995 0.52 +0.7 1,772,636 - QEN71_RS07995 0.52 -1.5 1,772,636 - QEN71_RS07995 0.52 -0.1 1,772,776 + QEN71_RS07995 0.66 +0.9 1,772,776 + QEN71_RS07995 0.66 -0.8 1,772,776 + QEN71_RS07995 0.66 -0.3 1,772,776 + QEN71_RS07995 0.66 -1.7 1,772,776 + QEN71_RS07995 0.66 -0.9 1,772,776 + QEN71_RS07995 0.66 -1.1 1,772,776 + QEN71_RS07995 0.66 +0.5 1,772,776 + QEN71_RS07995 0.66 -0.3 1,772,777 - QEN71_RS07995 0.66 -0.4 1,772,777 - QEN71_RS07995 0.66 -0.4 1,772,777 - QEN71_RS07995 0.66 +2.2 1,772,777 - QEN71_RS07995 0.66 -1.7 1,772,777 - QEN71_RS07995 0.66 +0.0 1,772,905 + QEN71_RS07995 0.79 -1.9
Or see this region's nucleotide sequence