Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS05840

Experiment: Motility_outer_sample

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS05835 and QEN71_RS05840 are separated by 28 nucleotidesQEN71_RS05840 and QEN71_RS05845 are separated by 306 nucleotides QEN71_RS05835: QEN71_RS05835 - single-stranded-DNA-specific exonuclease RecJ, at 1,294,219 to 1,295,925 _RS05835 QEN71_RS05840: QEN71_RS05840 - regulator, at 1,295,954 to 1,297,048 _RS05840 QEN71_RS05845: QEN71_RS05845 - lipoprotein-releasing ABC transporter permease subunit, at 1,297,355 to 1,298,608 _RS05845 Position (kb) 1295 1296 1297 1298Strain fitness (log2 ratio) -3 -2 -1 0 1at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.330 kb on + strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.331 kb on - strand, within QEN71_RS05835at 1295.517 kb on + strand, within QEN71_RS05835at 1295.591 kb on + strand, within QEN71_RS05835at 1295.592 kb on - strand, within QEN71_RS05835at 1295.615 kb on + strand, within QEN71_RS05835at 1295.615 kb on + strand, within QEN71_RS05835at 1295.616 kb on - strand, within QEN71_RS05835at 1295.616 kb on - strand, within QEN71_RS05835at 1295.616 kb on - strand, within QEN71_RS05835at 1295.616 kb on - strand, within QEN71_RS05835at 1295.687 kb on + strand, within QEN71_RS05835at 1295.687 kb on + strand, within QEN71_RS05835at 1295.688 kb on - strand, within QEN71_RS05835at 1295.688 kb on - strand, within QEN71_RS05835at 1295.963 kb on - strandat 1296.579 kb on + strand, within QEN71_RS05840at 1296.580 kb on - strand, within QEN71_RS05840at 1296.792 kb on + strand, within QEN71_RS05840at 1296.792 kb on + strand, within QEN71_RS05840at 1296.792 kb on + strand, within QEN71_RS05840at 1296.793 kb on - strand, within QEN71_RS05840at 1296.963 kb on + strandat 1296.963 kb on + strandat 1296.964 kb on - strandat 1296.964 kb on - strandat 1296.964 kb on - strandat 1297.008 kb on - strandat 1297.051 kb on + strandat 1297.051 kb on + strandat 1297.051 kb on + strandat 1297.051 kb on + strandat 1297.051 kb on + strandat 1297.051 kb on + strandat 1297.052 kb on - strandat 1297.052 kb on - strandat 1297.119 kb on + strandat 1297.119 kb on + strandat 1297.119 kb on + strandat 1297.120 kb on - strandat 1297.120 kb on - strandat 1297.120 kb on - strandat 1297.242 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample
remove
1,295,330 + QEN71_RS05835 0.65 +0.4
1,295,330 + QEN71_RS05835 0.65 +1.4
1,295,330 + QEN71_RS05835 0.65 +0.4
1,295,330 + QEN71_RS05835 0.65 +0.4
1,295,330 + QEN71_RS05835 0.65 +0.5
1,295,330 + QEN71_RS05835 0.65 -1.5
1,295,330 + QEN71_RS05835 0.65 +0.6
1,295,330 + QEN71_RS05835 0.65 +0.4
1,295,330 + QEN71_RS05835 0.65 -1.9
1,295,330 + QEN71_RS05835 0.65 -0.3
1,295,330 + QEN71_RS05835 0.65 +0.5
1,295,330 + QEN71_RS05835 0.65 -0.1
1,295,330 + QEN71_RS05835 0.65 -1.4
1,295,330 + QEN71_RS05835 0.65 +1.2
1,295,330 + QEN71_RS05835 0.65 -1.7
1,295,330 + QEN71_RS05835 0.65 +0.5
1,295,330 + QEN71_RS05835 0.65 -0.5
1,295,330 + QEN71_RS05835 0.65 +1.1
1,295,330 + QEN71_RS05835 0.65 -1.1
1,295,330 + QEN71_RS05835 0.65 -0.8
1,295,330 + QEN71_RS05835 0.65 -0.1
1,295,330 + QEN71_RS05835 0.65 -0.1
1,295,330 + QEN71_RS05835 0.65 -1.0
1,295,331 - QEN71_RS05835 0.65 -1.1
1,295,331 - QEN71_RS05835 0.65 -0.1
1,295,331 - QEN71_RS05835 0.65 -0.0
1,295,331 - QEN71_RS05835 0.65 -1.1
1,295,331 - QEN71_RS05835 0.65 +0.8
1,295,331 - QEN71_RS05835 0.65 -0.8
1,295,331 - QEN71_RS05835 0.65 -0.0
1,295,331 - QEN71_RS05835 0.65 +0.5
1,295,331 - QEN71_RS05835 0.65 -0.8
1,295,331 - QEN71_RS05835 0.65 -0.2
1,295,331 - QEN71_RS05835 0.65 -2.8
1,295,331 - QEN71_RS05835 0.65 +0.1
1,295,517 + QEN71_RS05835 0.76 +1.3
1,295,591 + QEN71_RS05835 0.80 -1.1
1,295,592 - QEN71_RS05835 0.80 -0.2
1,295,615 + QEN71_RS05835 0.82 -1.4
1,295,615 + QEN71_RS05835 0.82 +1.2
1,295,616 - QEN71_RS05835 0.82 -0.2
1,295,616 - QEN71_RS05835 0.82 -0.1
1,295,616 - QEN71_RS05835 0.82 +0.3
1,295,616 - QEN71_RS05835 0.82 +0.5
1,295,687 + QEN71_RS05835 0.86 +0.0
1,295,687 + QEN71_RS05835 0.86 +0.4
1,295,688 - QEN71_RS05835 0.86 +1.1
1,295,688 - QEN71_RS05835 0.86 -0.1
1,295,963 - +0.0
1,296,579 + QEN71_RS05840 0.57 -1.2
1,296,580 - QEN71_RS05840 0.57 -1.4
1,296,792 + QEN71_RS05840 0.77 -0.8
1,296,792 + QEN71_RS05840 0.77 -2.2
1,296,792 + QEN71_RS05840 0.77 -1.4
1,296,793 - QEN71_RS05840 0.77 -0.5
1,296,963 + -0.2
1,296,963 + -0.2
1,296,964 - -2.0
1,296,964 - -1.8
1,296,964 - -0.5
1,297,008 - -2.1
1,297,051 + -3.4
1,297,051 + -0.1
1,297,051 + -1.7
1,297,051 + -0.2
1,297,051 + -0.5
1,297,051 + -0.6
1,297,052 - -0.6
1,297,052 - -1.6
1,297,119 + -1.4
1,297,119 + +0.4
1,297,119 + +1.1
1,297,120 - +0.5
1,297,120 - -0.1
1,297,120 - -0.2
1,297,242 + -2.3

Or see this region's nucleotide sequence