Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS04775

Experiment: Motility_outer_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS04770 and QEN71_RS04775 are separated by 452 nucleotidesQEN71_RS04775 and QEN71_RS04780 are separated by 133 nucleotides QEN71_RS04770: QEN71_RS04770 - MFS transporter, at 1,040,249 to 1,041,493 _RS04770 QEN71_RS04775: QEN71_RS04775 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 1,041,946 to 1,043,100 _RS04775 QEN71_RS04780: QEN71_RS04780 - carbamoyl-phosphate synthase large subunit, at 1,043,234 to 1,046,488 _RS04780 Position (kb) 1041 1042 1043 1044Strain fitness (log2 ratio) -2 -1 0 1at 1041.000 kb on + strand, within QEN71_RS04770at 1041.000 kb on + strand, within QEN71_RS04770at 1041.001 kb on - strand, within QEN71_RS04770at 1041.086 kb on + strand, within QEN71_RS04770at 1041.183 kb on - strand, within QEN71_RS04770at 1041.215 kb on + strand, within QEN71_RS04770at 1041.215 kb on + strand, within QEN71_RS04770at 1041.215 kb on + strand, within QEN71_RS04770at 1041.215 kb on + strand, within QEN71_RS04770at 1041.215 kb on + strand, within QEN71_RS04770at 1041.215 kb on + strand, within QEN71_RS04770at 1041.215 kb on + strand, within QEN71_RS04770at 1041.215 kb on + strand, within QEN71_RS04770at 1041.215 kb on + strand, within QEN71_RS04770at 1041.215 kb on + strand, within QEN71_RS04770at 1041.215 kb on + strand, within QEN71_RS04770at 1041.215 kb on + strand, within QEN71_RS04770at 1041.215 kb on + strand, within QEN71_RS04770at 1041.216 kb on - strand, within QEN71_RS04770at 1041.216 kb on - strand, within QEN71_RS04770at 1041.216 kb on - strand, within QEN71_RS04770at 1041.216 kb on - strand, within QEN71_RS04770at 1041.216 kb on - strand, within QEN71_RS04770at 1041.265 kb on + strand, within QEN71_RS04770at 1041.266 kb on - strand, within QEN71_RS04770at 1041.266 kb on - strand, within QEN71_RS04770at 1041.266 kb on - strand, within QEN71_RS04770at 1041.360 kb on - strand, within QEN71_RS04770at 1041.428 kb on + strandat 1041.428 kb on + strandat 1041.428 kb on + strandat 1041.428 kb on + strandat 1041.428 kb on + strandat 1041.428 kb on + strandat 1041.428 kb on + strandat 1041.428 kb on + strandat 1041.428 kb on + strandat 1041.428 kb on + strandat 1041.428 kb on + strandat 1041.428 kb on + strandat 1041.428 kb on + strandat 1041.428 kb on + strandat 1041.428 kb on + strandat 1041.429 kb on - strandat 1041.429 kb on - strandat 1041.429 kb on - strandat 1041.429 kb on - strandat 1041.429 kb on - strandat 1041.491 kb on + strandat 1041.491 kb on + strandat 1041.491 kb on + strandat 1041.491 kb on + strandat 1041.491 kb on + strandat 1041.492 kb on - strandat 1041.492 kb on - strandat 1041.492 kb on - strandat 1041.492 kb on - strandat 1041.492 kb on - strandat 1041.492 kb on - strandat 1041.505 kb on + strandat 1041.506 kb on - strandat 1041.513 kb on + strandat 1041.587 kb on + strandat 1041.587 kb on + strandat 1041.587 kb on + strandat 1041.587 kb on + strandat 1041.588 kb on - strandat 1041.637 kb on + strandat 1041.658 kb on + strandat 1041.658 kb on + strandat 1041.658 kb on + strandat 1041.680 kb on + strandat 1043.098 kb on + strandat 1043.098 kb on + strandat 1043.098 kb on + strandat 1043.104 kb on + strandat 1043.104 kb on + strandat 1043.104 kb on + strandat 1043.104 kb on + strandat 1043.104 kb on + strandat 1043.104 kb on + strandat 1043.104 kb on + strandat 1043.104 kb on + strandat 1043.104 kb on + strandat 1043.104 kb on + strandat 1043.104 kb on + strandat 1043.104 kb on + strandat 1043.104 kb on + strandat 1043.104 kb on + strandat 1043.115 kb on + strandat 1043.216 kb on + strandat 1043.216 kb on + strandat 1043.216 kb on + strandat 1043.216 kb on + strandat 1043.216 kb on + strandat 1043.216 kb on + strandat 1043.216 kb on + strandat 1043.254 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample
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1,041,000 + QEN71_RS04770 0.60 -0.7
1,041,000 + QEN71_RS04770 0.60 -0.3
1,041,001 - QEN71_RS04770 0.60 +1.0
1,041,086 + QEN71_RS04770 0.67 +1.0
1,041,183 - QEN71_RS04770 0.75 +0.4
1,041,215 + QEN71_RS04770 0.78 -0.5
1,041,215 + QEN71_RS04770 0.78 -0.1
1,041,215 + QEN71_RS04770 0.78 +0.2
1,041,215 + QEN71_RS04770 0.78 -0.2
1,041,215 + QEN71_RS04770 0.78 -0.2
1,041,215 + QEN71_RS04770 0.78 +0.5
1,041,215 + QEN71_RS04770 0.78 -0.7
1,041,215 + QEN71_RS04770 0.78 +0.9
1,041,215 + QEN71_RS04770 0.78 -0.2
1,041,215 + QEN71_RS04770 0.78 -0.8
1,041,215 + QEN71_RS04770 0.78 -0.2
1,041,215 + QEN71_RS04770 0.78 -0.1
1,041,215 + QEN71_RS04770 0.78 +0.6
1,041,216 - QEN71_RS04770 0.78 +0.6
1,041,216 - QEN71_RS04770 0.78 -1.1
1,041,216 - QEN71_RS04770 0.78 -0.6
1,041,216 - QEN71_RS04770 0.78 +0.6
1,041,216 - QEN71_RS04770 0.78 +0.9
1,041,265 + QEN71_RS04770 0.82 -0.2
1,041,266 - QEN71_RS04770 0.82 +0.0
1,041,266 - QEN71_RS04770 0.82 -0.2
1,041,266 - QEN71_RS04770 0.82 -1.4
1,041,360 - QEN71_RS04770 0.89 +1.4
1,041,428 + -1.2
1,041,428 + +0.8
1,041,428 + -1.5
1,041,428 + +0.7
1,041,428 + +0.1
1,041,428 + +0.3
1,041,428 + -1.3
1,041,428 + -0.5
1,041,428 + +1.6
1,041,428 + -0.2
1,041,428 + -0.7
1,041,428 + -0.2
1,041,428 + -0.1
1,041,428 + -0.6
1,041,428 + +0.2
1,041,429 - -0.2
1,041,429 - +0.5
1,041,429 - +0.6
1,041,429 - -0.5
1,041,429 - -1.9
1,041,491 + -0.2
1,041,491 + -0.5
1,041,491 + -1.8
1,041,491 + -0.0
1,041,491 + -1.0
1,041,492 - +1.0
1,041,492 - -0.1
1,041,492 - +0.0
1,041,492 - -0.2
1,041,492 - +0.6
1,041,492 - -1.6
1,041,505 + -1.4
1,041,506 - -0.5
1,041,513 + -1.4
1,041,587 + +0.1
1,041,587 + +1.5
1,041,587 + -1.5
1,041,587 + +0.2
1,041,588 - -1.0
1,041,637 + -1.9
1,041,658 + +0.1
1,041,658 + -1.0
1,041,658 + +0.2
1,041,680 + -0.2
1,043,098 + -1.3
1,043,098 + +0.0
1,043,098 + -1.4
1,043,104 + -0.6
1,043,104 + -1.2
1,043,104 + -0.4
1,043,104 + -1.3
1,043,104 + +0.5
1,043,104 + -0.5
1,043,104 + +0.1
1,043,104 + -1.1
1,043,104 + +0.3
1,043,104 + -0.3
1,043,104 + +0.0
1,043,104 + +0.6
1,043,104 + +0.6
1,043,104 + -1.5
1,043,115 + +0.7
1,043,216 + -1.2
1,043,216 + +1.4
1,043,216 + -0.8
1,043,216 + +0.4
1,043,216 + -0.1
1,043,216 + +0.8
1,043,216 + +0.3
1,043,254 + -0.5

Or see this region's nucleotide sequence