Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS16385

Experiment: biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
3,605,009	+		LRK53_RS16375	0.71	-1.6
3,605,009	+		LRK53_RS16375	0.71	-2.4
3,605,010	-		LRK53_RS16375	0.71	-0.8
3,605,082	+		LRK53_RS16375	0.76	-1.4
3,605,082	+		LRK53_RS16375	0.76	-0.1
3,605,082	+		LRK53_RS16375	0.76	-0.7
3,605,083	-		LRK53_RS16375	0.76	-0.8
3,605,083	-		LRK53_RS16375	0.76	-0.4
3,605,083	-		LRK53_RS16375	0.76	-2.7
3,605,083	-		LRK53_RS16375	0.76	+0.6
3,605,083	-		LRK53_RS16375	0.76	+0.7
3,605,083	-		LRK53_RS16375	0.76	-0.6
3,605,252	+		LRK53_RS16375	0.88	-0.5
3,605,252	+		LRK53_RS16375	0.88	-0.0
3,605,310	-				-0.4
3,605,310	-				-2.2
3,605,310	-				-0.9
3,605,310	-				-0.4
3,605,310	-				+0.2
3,605,310	-				-1.1
3,605,310	-				-0.2
3,605,338	+				-0.4
3,605,338	+				+1.5
3,605,338	+				+0.2
3,605,338	+				-1.3
3,605,339	-				-0.2
3,605,339	-				+0.1
3,605,399	-				+0.9
3,605,426	-				-1.5
3,605,426	-				+1.4
3,605,426	-				+2.2
3,605,426	-				-1.5
3,605,429	+				-0.4
3,605,429	+				-2.4
3,605,429	+				-1.3
3,605,429	+				-0.5
3,605,429	+				-1.6
3,605,429	+				-1.3
3,605,429	+				-1.3
3,605,429	+				-0.3
3,605,430	-				-2.3
3,605,430	-				+0.6
3,605,430	-				-0.8
3,605,430	-				-0.9
3,605,430	-				-0.7
3,605,430	-				-0.1
3,605,431	+				-1.3
3,605,446	+				-1.2
3,605,446	+				-0.3
3,605,446	+				-1.3
3,605,447	-				-0.7
3,605,447	-				-2.1
3,605,447	-				-1.9
3,605,447	-				-1.0
3,605,488	+		LRK53_RS16380	0.17	+0.2
3,605,488	+		LRK53_RS16380	0.17	-0.8
3,605,488	+		LRK53_RS16380	0.17	-0.6
3,605,488	+		LRK53_RS16380	0.17	+1.1
3,605,488	+		LRK53_RS16380	0.17	+0.2
3,605,488	+		LRK53_RS16380	0.17	+0.1
3,605,488	+		LRK53_RS16380	0.17	-0.6
3,605,489	-		LRK53_RS16380	0.18	+0.3
3,605,489	-		LRK53_RS16380	0.18	-2.7
3,605,489	-		LRK53_RS16380	0.18	-0.3
3,605,489	-		LRK53_RS16380	0.18	-2.2
3,605,489	-		LRK53_RS16380	0.18	+1.0
3,605,489	-		LRK53_RS16380	0.18	+0.3
3,605,489	-		LRK53_RS16380	0.18	-1.4
3,605,489	-		LRK53_RS16380	0.18	+0.7
3,605,489	-		LRK53_RS16380	0.18	+0.2
3,605,489	-		LRK53_RS16380	0.18	+0.7
3,605,489	-		LRK53_RS16380	0.18	-0.0
3,605,489	-		LRK53_RS16380	0.18	-0.8
3,605,665	+		LRK53_RS16380	0.66	+1.1
3,605,665	+		LRK53_RS16380	0.66	+0.4
3,605,665	+		LRK53_RS16380	0.66	-0.1
3,605,665	+		LRK53_RS16380	0.66	-0.0
3,605,665	+		LRK53_RS16380	0.66	-1.4
3,605,665	+		LRK53_RS16380	0.66	-0.9
3,605,665	+		LRK53_RS16380	0.66	+1.2
3,605,665	+		LRK53_RS16380	0.66	-0.6
3,605,666	-		LRK53_RS16380	0.66	-2.0
3,605,666	-		LRK53_RS16380	0.66	+0.8
3,605,666	-		LRK53_RS16380	0.66	-0.1
3,605,666	-		LRK53_RS16380	0.66	-0.8
3,605,666	-		LRK53_RS16380	0.66	-0.1
3,605,666	-		LRK53_RS16380	0.66	+1.4
3,605,762	+				-1.5
3,605,763	-				-0.1
3,605,763	-				-0.9
3,605,810	+				-0.3
3,605,810	+				-0.1
3,605,810	+				-2.5
3,605,810	+				+0.1
3,605,810	+				+1.0
3,605,810	+				-0.2
3,605,810	+				-2.0
3,605,810	+				-0.9
3,605,810	+				-0.3
3,605,811	-				-0.7
3,605,811	-				-1.2
3,605,811	-				-0.4
3,605,811	-				-1.5
3,605,811	-				-0.5
3,605,811	-				-1.0
3,605,884	+		LRK53_RS16385	0.21	+0.5
3,605,884	+		LRK53_RS16385	0.21	+0.3
3,605,884	+		LRK53_RS16385	0.21	-0.4
3,605,884	+		LRK53_RS16385	0.21	-0.5
3,605,884	+		LRK53_RS16385	0.21	-0.7
3,605,884	+		LRK53_RS16385	0.21	-1.8
3,605,885	-		LRK53_RS16385	0.21	+0.7
3,605,885	-		LRK53_RS16385	0.21	-0.9
3,605,885	-		LRK53_RS16385	0.21	-0.7
3,605,885	-		LRK53_RS16385	0.21	+0.7
3,605,944	-		LRK53_RS16385	0.31	-1.2
3,605,944	-		LRK53_RS16385	0.31	-0.9
3,605,984	+		LRK53_RS16385	0.38	-0.5
3,605,984	+		LRK53_RS16385	0.38	-0.1
3,605,984	+		LRK53_RS16385	0.38	-0.6
3,605,984	+		LRK53_RS16385	0.38	-0.0
3,605,984	+		LRK53_RS16385	0.38	-1.6
3,605,985	-		LRK53_RS16385	0.38	-0.3
3,605,985	-		LRK53_RS16385	0.38	+2.6
3,606,136	+		LRK53_RS16385	0.63	-1.7
3,606,136	+		LRK53_RS16385	0.63	-1.3
3,606,161	+		LRK53_RS16385	0.67	-0.4
3,606,161	+		LRK53_RS16385	0.67	-0.8
3,606,161	+		LRK53_RS16385	0.67	-0.4
3,606,161	+		LRK53_RS16385	0.67	-1.7
3,606,161	+		LRK53_RS16385	0.67	-0.3
3,606,161	+		LRK53_RS16385	0.67	-1.4
3,606,161	+		LRK53_RS16385	0.67	-0.5
3,606,161	+		LRK53_RS16385	0.67	-1.0
3,606,161	+		LRK53_RS16385	0.67	-0.8
3,606,161	+		LRK53_RS16385	0.67	-1.6
3,606,161	+		LRK53_RS16385	0.67	-0.4
3,606,161	+		LRK53_RS16385	0.67	-1.2
3,606,162	-		LRK53_RS16385	0.68	-1.8
3,606,162	-		LRK53_RS16385	0.68	-0.7
3,606,162	-		LRK53_RS16385	0.68	+0.2
3,606,162	-		LRK53_RS16385	0.68	+1.6
3,606,162	-		LRK53_RS16385	0.68	+0.1
3,606,162	-		LRK53_RS16385	0.68	-0.6
3,606,162	-		LRK53_RS16385	0.68	-0.7
3,606,162	-		LRK53_RS16385	0.68	-3.9
3,606,162	-		LRK53_RS16385	0.68	-0.1
3,606,162	-		LRK53_RS16385	0.68	+0.7
3,606,162	-		LRK53_RS16385	0.68	-0.7
3,606,176	+		LRK53_RS16385	0.70	-0.8
3,606,176	+		LRK53_RS16385	0.70	+1.8
3,606,177	-		LRK53_RS16385	0.70	-2.0
3,606,268	+		LRK53_RS16385	0.85	-1.8
3,606,279	+		LRK53_RS16385	0.87	-1.0
3,606,387	+				-1.3
3,606,511	-				-2.7
3,606,589	+		LRK53_RS16390	0.12	-1.0
3,606,589	+		LRK53_RS16390	0.12	+1.7
3,606,589	+		LRK53_RS16390	0.12	-2.1
3,606,589	+		LRK53_RS16390	0.12	+0.3
3,606,589	+		LRK53_RS16390	0.12	-0.7
3,606,589	+		LRK53_RS16390	0.12	-0.6
3,606,589	+		LRK53_RS16390	0.12	-1.2
3,606,589	+		LRK53_RS16390	0.12	-1.6
3,606,590	-		LRK53_RS16390	0.12	-0.6
3,606,590	-		LRK53_RS16390	0.12	+0.1
3,606,590	-		LRK53_RS16390	0.12	+0.1
3,606,590	-		LRK53_RS16390	0.12	-0.5
3,606,590	-		LRK53_RS16390	0.12	-0.2
3,606,590	-		LRK53_RS16390	0.12	-3.2
3,606,590	-		LRK53_RS16390	0.12	-0.4
3,606,590	-		LRK53_RS16390	0.12	+0.7
3,606,590	-		LRK53_RS16390	0.12	-0.8
3,606,590	-		LRK53_RS16390	0.12	-0.3
3,606,590	-		LRK53_RS16390	0.12	-1.3
3,606,590	-		LRK53_RS16390	0.12	+0.5
3,606,590	-		LRK53_RS16390	0.12	+1.4
3,606,590	-		LRK53_RS16390	0.12	-0.5
3,606,590	-		LRK53_RS16390	0.12	-1.6
3,606,590	-		LRK53_RS16390	0.12	-1.6
3,606,590	-		LRK53_RS16390	0.12	-0.8
3,606,590	-		LRK53_RS16390	0.12	-0.1
3,606,590	-		LRK53_RS16390	0.12	-0.9
3,606,590	-		LRK53_RS16390	0.12	-0.8
3,606,590	-		LRK53_RS16390	0.12	+0.8
3,606,590	-		LRK53_RS16390	0.12	+0.2
3,606,601	+		LRK53_RS16390	0.12	-0.1
3,606,601	+		LRK53_RS16390	0.12	+0.3
3,606,602	-		LRK53_RS16390	0.13	+0.5
3,606,602	-		LRK53_RS16390	0.13	-1.3
3,606,602	-		LRK53_RS16390	0.13	-1.6
3,606,602	-		LRK53_RS16390	0.13	-0.6
3,606,602	-		LRK53_RS16390	0.13	-1.9
3,606,602	-		LRK53_RS16390	0.13	-1.0
3,606,654	+		LRK53_RS16390	0.15	-0.1
3,606,655	-		LRK53_RS16390	0.15	-0.5
3,606,655	-		LRK53_RS16390	0.15	-1.6
3,606,662	+		LRK53_RS16390	0.16	-0.2
3,606,723	+		LRK53_RS16390	0.19	+0.4
3,606,753	+		LRK53_RS16390	0.21	-1.5
3,606,754	-		LRK53_RS16390	0.21	-0.5
3,606,845	+		LRK53_RS16390	0.26	-1.1
3,606,846	-		LRK53_RS16390	0.26	-0.3
3,606,911	+		LRK53_RS16390	0.29	+1.5
3,606,911	+		LRK53_RS16390	0.29	+0.7
3,606,911	+		LRK53_RS16390	0.29	-0.6
3,606,912	-		LRK53_RS16390	0.29	-0.5
3,606,912	-		LRK53_RS16390	0.29	-1.1
3,606,912	-		LRK53_RS16390	0.29	-0.5
3,606,912	-		LRK53_RS16390	0.29	-3.4
3,606,912	-		LRK53_RS16390	0.29	-1.4
3,606,935	+		LRK53_RS16390	0.30	-1.1
3,606,935	+		LRK53_RS16390	0.30	-0.7
3,606,935	+		LRK53_RS16390	0.30	+1.6
3,606,936	-		LRK53_RS16390	0.31	+0.6
3,606,936	-		LRK53_RS16390	0.31	+0.2
3,606,936	-		LRK53_RS16390	0.31	+0.6
3,606,936	-		LRK53_RS16390	0.31	-0.9
3,606,958	+		LRK53_RS16390	0.32	-1.5
3,606,959	-		LRK53_RS16390	0.32	-1.4
3,607,023	+		LRK53_RS16390	0.35	-0.4
3,607,023	+		LRK53_RS16390	0.35	+1.5
3,607,024	-		LRK53_RS16390	0.35	+0.9
3,607,024	-		LRK53_RS16390	0.35	-1.4
3,607,073	+		LRK53_RS16390	0.38	+0.5
3,607,073	+		LRK53_RS16390	0.38	-0.3
3,607,082	+		LRK53_RS16390	0.38	-0.1
3,607,082	+		LRK53_RS16390	0.38	-1.0
3,607,082	+		LRK53_RS16390	0.38	-0.9
3,607,082	+		LRK53_RS16390	0.38	+0.5
3,607,083	-		LRK53_RS16390	0.38	-2.1
3,607,083	-		LRK53_RS16390	0.38	-0.3
3,607,083	-		LRK53_RS16390	0.38	-0.9
3,607,083	-		LRK53_RS16390	0.38	-0.4
3,607,262	+		LRK53_RS16390	0.48	+1.7
3,607,262	+		LRK53_RS16390	0.48	-0.6
3,607,262	+		LRK53_RS16390	0.48	-1.3
3,607,263	-		LRK53_RS16390	0.48	-0.3
3,607,263	-		LRK53_RS16390	0.48	-3.0
3,607,263	-		LRK53_RS16390	0.48	-0.2
3,607,263	-		LRK53_RS16390	0.48	-2.9
3,607,349	+		LRK53_RS16390	0.53	-0.5
3,607,349	+		LRK53_RS16390	0.53	-1.3
3,607,349	+		LRK53_RS16390	0.53	+0.4
3,607,349	+		LRK53_RS16390	0.53	+0.1
3,607,349	+		LRK53_RS16390	0.53	+0.2
3,607,349	+		LRK53_RS16390	0.53	-0.7