Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03820

Experiment: biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03810 and LRK53_RS03815 overlap by 4 nucleotidesLRK53_RS03815 and LRK53_RS03820 overlap by 4 nucleotidesLRK53_RS03820 and LRK53_RS03825 overlap by 4 nucleotides LRK53_RS03810: LRK53_RS03810 - thiazole synthase, at 894,037 to 894,816 _RS03810 LRK53_RS03815: LRK53_RS03815 - thiamine phosphate synthase, at 894,813 to 895,421 _RS03815 LRK53_RS03820: LRK53_RS03820 - ThiF family adenylyltransferase, at 895,418 to 896,395 _RS03820 LRK53_RS03825: LRK53_RS03825 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 896,392 to 897,186 _RS03825 Position (kb) 895 896 897Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 894.430 kb on + strand, within LRK53_RS03810at 894.430 kb on + strand, within LRK53_RS03810at 894.430 kb on + strand, within LRK53_RS03810at 894.430 kb on + strand, within LRK53_RS03810at 894.430 kb on + strand, within LRK53_RS03810at 894.430 kb on + strand, within LRK53_RS03810at 894.431 kb on - strand, within LRK53_RS03810at 894.431 kb on - strand, within LRK53_RS03810at 894.431 kb on - strand, within LRK53_RS03810at 894.431 kb on - strand, within LRK53_RS03810at 894.431 kb on - strand, within LRK53_RS03810at 894.431 kb on - strand, within LRK53_RS03810at 894.640 kb on + strand, within LRK53_RS03810at 894.640 kb on + strand, within LRK53_RS03810at 894.640 kb on + strand, within LRK53_RS03810at 894.641 kb on - strand, within LRK53_RS03810at 894.641 kb on - strand, within LRK53_RS03810at 894.834 kb on + strandat 894.834 kb on + strandat 894.835 kb on - strandat 894.835 kb on - strandat 894.835 kb on - strandat 895.032 kb on + strand, within LRK53_RS03815at 895.032 kb on + strand, within LRK53_RS03815at 895.032 kb on + strand, within LRK53_RS03815at 895.032 kb on + strand, within LRK53_RS03815at 895.032 kb on + strand, within LRK53_RS03815at 895.032 kb on + strand, within LRK53_RS03815at 895.033 kb on - strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.626 kb on - strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 896.350 kb on + strandat 896.350 kb on + strandat 896.485 kb on + strand, within LRK53_RS03825at 896.485 kb on + strand, within LRK53_RS03825at 896.534 kb on + strand, within LRK53_RS03825at 896.535 kb on - strand, within LRK53_RS03825at 896.579 kb on + strand, within LRK53_RS03825at 896.579 kb on + strand, within LRK53_RS03825at 896.579 kb on + strand, within LRK53_RS03825at 896.579 kb on + strand, within LRK53_RS03825at 896.579 kb on + strand, within LRK53_RS03825at 896.579 kb on + strand, within LRK53_RS03825at 896.579 kb on + strand, within LRK53_RS03825at 896.579 kb on + strand, within LRK53_RS03825at 896.580 kb on - strand, within LRK53_RS03825at 896.580 kb on - strand, within LRK53_RS03825at 896.580 kb on - strand, within LRK53_RS03825at 896.580 kb on - strand, within LRK53_RS03825at 896.650 kb on + strand, within LRK53_RS03825at 896.650 kb on + strand, within LRK53_RS03825at 896.651 kb on - strand, within LRK53_RS03825at 896.651 kb on - strand, within LRK53_RS03825at 896.651 kb on - strand, within LRK53_RS03825at 896.651 kb on - strand, within LRK53_RS03825at 896.651 kb on - strand, within LRK53_RS03825at 896.997 kb on - strand, within LRK53_RS03825at 896.997 kb on - strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.100 kb on + strand, within LRK53_RS03825at 897.101 kb on - strand, within LRK53_RS03825at 897.101 kb on - strand, within LRK53_RS03825at 897.101 kb on - strand, within LRK53_RS03825at 897.101 kb on - strand, within LRK53_RS03825at 897.101 kb on - strand, within LRK53_RS03825at 897.101 kb on - strand, within LRK53_RS03825at 897.101 kb on - strand, within LRK53_RS03825

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
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894,430 + LRK53_RS03810 0.50 -2.2
894,430 + LRK53_RS03810 0.50 +2.0
894,430 + LRK53_RS03810 0.50 -1.7
894,430 + LRK53_RS03810 0.50 -0.7
894,430 + LRK53_RS03810 0.50 -1.3
894,430 + LRK53_RS03810 0.50 +0.8
894,431 - LRK53_RS03810 0.51 -0.3
894,431 - LRK53_RS03810 0.51 +0.1
894,431 - LRK53_RS03810 0.51 -1.1
894,431 - LRK53_RS03810 0.51 +0.9
894,431 - LRK53_RS03810 0.51 +1.0
894,431 - LRK53_RS03810 0.51 +0.0
894,640 + LRK53_RS03810 0.77 -1.8
894,640 + LRK53_RS03810 0.77 -1.3
894,640 + LRK53_RS03810 0.77 -1.0
894,641 - LRK53_RS03810 0.77 -1.5
894,641 - LRK53_RS03810 0.77 -2.8
894,834 + +0.6
894,834 + -0.6
894,835 - -1.5
894,835 - +0.5
894,835 - -2.0
895,032 + LRK53_RS03815 0.36 -1.3
895,032 + LRK53_RS03815 0.36 -0.3
895,032 + LRK53_RS03815 0.36 -0.7
895,032 + LRK53_RS03815 0.36 -0.8
895,032 + LRK53_RS03815 0.36 -0.7
895,032 + LRK53_RS03815 0.36 -0.9
895,033 - LRK53_RS03815 0.36 -2.0
895,161 + LRK53_RS03815 0.57 +0.5
895,161 + LRK53_RS03815 0.57 -0.1
895,161 + LRK53_RS03815 0.57 -0.2
895,161 + LRK53_RS03815 0.57 +0.5
895,161 + LRK53_RS03815 0.57 +1.0
895,161 + LRK53_RS03815 0.57 +0.2
895,161 + LRK53_RS03815 0.57 -1.0
895,161 + LRK53_RS03815 0.57 -0.5
895,161 + LRK53_RS03815 0.57 -3.9
895,162 - LRK53_RS03815 0.57 -1.0
895,162 - LRK53_RS03815 0.57 +0.7
895,162 - LRK53_RS03815 0.57 +0.0
895,162 - LRK53_RS03815 0.57 -2.4
895,162 - LRK53_RS03815 0.57 -1.9
895,162 - LRK53_RS03815 0.57 -0.6
895,162 - LRK53_RS03815 0.57 -2.1
895,162 - LRK53_RS03815 0.57 +0.1
895,162 - LRK53_RS03815 0.57 -0.3
895,162 - LRK53_RS03815 0.57 -0.6
895,162 - LRK53_RS03815 0.57 -1.3
895,626 - LRK53_RS03820 0.21 -1.8
895,698 + LRK53_RS03820 0.29 -2.2
895,698 + LRK53_RS03820 0.29 -1.4
895,698 + LRK53_RS03820 0.29 -0.9
895,698 + LRK53_RS03820 0.29 -1.1
895,698 + LRK53_RS03820 0.29 -0.9
895,698 + LRK53_RS03820 0.29 -0.6
895,698 + LRK53_RS03820 0.29 +0.0
895,698 + LRK53_RS03820 0.29 +0.9
895,698 + LRK53_RS03820 0.29 -1.2
895,699 - LRK53_RS03820 0.29 +2.3
895,699 - LRK53_RS03820 0.29 -0.2
895,699 - LRK53_RS03820 0.29 -1.7
895,699 - LRK53_RS03820 0.29 +0.3
895,699 - LRK53_RS03820 0.29 +0.5
895,699 - LRK53_RS03820 0.29 -0.6
895,699 - LRK53_RS03820 0.29 -1.7
895,699 - LRK53_RS03820 0.29 -0.3
895,802 + LRK53_RS03820 0.39 +0.0
895,802 + LRK53_RS03820 0.39 +0.2
895,802 + LRK53_RS03820 0.39 +1.6
895,802 + LRK53_RS03820 0.39 -1.6
895,802 + LRK53_RS03820 0.39 +0.1
895,802 + LRK53_RS03820 0.39 +0.7
895,802 + LRK53_RS03820 0.39 +1.0
895,802 + LRK53_RS03820 0.39 +1.3
895,802 + LRK53_RS03820 0.39 +0.7
895,802 + LRK53_RS03820 0.39 +1.1
895,802 + LRK53_RS03820 0.39 -1.9
895,802 + LRK53_RS03820 0.39 -1.0
895,803 - LRK53_RS03820 0.39 +0.2
895,803 - LRK53_RS03820 0.39 +0.2
895,803 - LRK53_RS03820 0.39 +1.4
895,803 - LRK53_RS03820 0.39 +0.5
895,803 - LRK53_RS03820 0.39 -1.5
895,803 - LRK53_RS03820 0.39 -0.7
895,803 - LRK53_RS03820 0.39 -0.9
895,803 - LRK53_RS03820 0.39 -0.3
896,350 + +0.1
896,350 + -0.1
896,485 + LRK53_RS03825 0.12 -0.3
896,485 + LRK53_RS03825 0.12 +0.5
896,534 + LRK53_RS03825 0.18 -0.6
896,535 - LRK53_RS03825 0.18 -1.9
896,579 + LRK53_RS03825 0.24 +1.0
896,579 + LRK53_RS03825 0.24 -0.7
896,579 + LRK53_RS03825 0.24 -0.8
896,579 + LRK53_RS03825 0.24 +1.0
896,579 + LRK53_RS03825 0.24 -1.3
896,579 + LRK53_RS03825 0.24 -2.0
896,579 + LRK53_RS03825 0.24 -0.5
896,579 + LRK53_RS03825 0.24 -2.3
896,580 - LRK53_RS03825 0.24 -0.7
896,580 - LRK53_RS03825 0.24 -1.4
896,580 - LRK53_RS03825 0.24 +0.5
896,580 - LRK53_RS03825 0.24 -3.2
896,650 + LRK53_RS03825 0.32 -0.4
896,650 + LRK53_RS03825 0.32 -0.3
896,651 - LRK53_RS03825 0.33 +0.6
896,651 - LRK53_RS03825 0.33 +0.5
896,651 - LRK53_RS03825 0.33 -0.6
896,651 - LRK53_RS03825 0.33 -0.8
896,651 - LRK53_RS03825 0.33 -1.8
896,997 - LRK53_RS03825 0.76 -2.7
896,997 - LRK53_RS03825 0.76 -0.4
897,100 + LRK53_RS03825 0.89 +1.4
897,100 + LRK53_RS03825 0.89 -0.4
897,100 + LRK53_RS03825 0.89 -0.3
897,100 + LRK53_RS03825 0.89 +0.5
897,100 + LRK53_RS03825 0.89 -0.3
897,100 + LRK53_RS03825 0.89 -0.1
897,100 + LRK53_RS03825 0.89 -0.3
897,100 + LRK53_RS03825 0.89 +0.2
897,100 + LRK53_RS03825 0.89 +0.3
897,100 + LRK53_RS03825 0.89 +0.1
897,100 + LRK53_RS03825 0.89 -0.6
897,101 - LRK53_RS03825 0.89 -0.2
897,101 - LRK53_RS03825 0.89 +0.4
897,101 - LRK53_RS03825 0.89 -0.6
897,101 - LRK53_RS03825 0.89 -0.3
897,101 - LRK53_RS03825 0.89 -1.0
897,101 - LRK53_RS03825 0.89 -1.5
897,101 - LRK53_RS03825 0.89 -0.1

Or see this region's nucleotide sequence