Experiment: biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03000 and LRK53_RS03005 are separated by 79 nucleotides LRK53_RS03005 and LRK53_RS03010 are separated by 303 nucleotides
LRK53_RS03000: LRK53_RS03000 - DMT family transporter, at 698,554 to 699,435
_RS03000
LRK53_RS03005: LRK53_RS03005 - DNA-3-methyladenine glycosylase I, at 699,515 to 700,093
_RS03005
LRK53_RS03010: LRK53_RS03010 - hypothetical protein, at 700,397 to 701,170
_RS03010
Position (kb) 699
700
701 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 698.522 kb on + strand at 698.522 kb on + strand at 698.522 kb on + strand at 698.523 kb on - strand at 698.523 kb on - strand at 698.523 kb on - strand at 698.523 kb on - strand at 698.523 kb on - strand at 698.783 kb on + strand, within LRK53_RS03000 at 698.783 kb on + strand, within LRK53_RS03000 at 698.783 kb on + strand, within LRK53_RS03000 at 698.783 kb on + strand, within LRK53_RS03000 at 698.783 kb on + strand, within LRK53_RS03000 at 698.783 kb on + strand, within LRK53_RS03000 at 698.783 kb on + strand, within LRK53_RS03000 at 698.783 kb on + strand, within LRK53_RS03000 at 698.783 kb on + strand, within LRK53_RS03000 at 698.784 kb on - strand, within LRK53_RS03000 at 698.784 kb on - strand, within LRK53_RS03000 at 698.784 kb on - strand, within LRK53_RS03000 at 698.784 kb on - strand, within LRK53_RS03000 at 698.784 kb on - strand, within LRK53_RS03000 at 698.784 kb on - strand, within LRK53_RS03000 at 698.784 kb on - strand, within LRK53_RS03000 at 699.131 kb on + strand, within LRK53_RS03000 at 699.131 kb on + strand, within LRK53_RS03000 at 699.131 kb on + strand, within LRK53_RS03000 at 699.131 kb on + strand, within LRK53_RS03000 at 699.131 kb on + strand, within LRK53_RS03000 at 699.131 kb on + strand, within LRK53_RS03000 at 699.131 kb on + strand, within LRK53_RS03000 at 699.131 kb on + strand, within LRK53_RS03000 at 699.131 kb on + strand, within LRK53_RS03000 at 699.132 kb on - strand, within LRK53_RS03000 at 699.132 kb on - strand, within LRK53_RS03000 at 699.132 kb on - strand, within LRK53_RS03000 at 699.338 kb on + strand, within LRK53_RS03000 at 699.338 kb on + strand, within LRK53_RS03000 at 699.338 kb on + strand, within LRK53_RS03000 at 699.338 kb on + strand, within LRK53_RS03000 at 699.339 kb on - strand, within LRK53_RS03000 at 699.339 kb on - strand, within LRK53_RS03000 at 699.339 kb on - strand, within LRK53_RS03000 at 699.339 kb on - strand, within LRK53_RS03000 at 699.339 kb on - strand, within LRK53_RS03000 at 699.371 kb on + strand at 699.371 kb on + strand at 699.371 kb on + strand at 699.371 kb on + strand at 699.371 kb on + strand at 699.372 kb on - strand at 699.372 kb on - strand at 699.372 kb on - strand at 699.372 kb on - strand at 699.372 kb on - strand at 699.372 kb on - strand at 699.467 kb on + strand at 699.480 kb on + strand at 699.480 kb on + strand at 699.481 kb on - strand at 699.481 kb on - strand at 699.481 kb on - strand at 699.481 kb on - strand at 699.581 kb on + strand, within LRK53_RS03005 at 699.581 kb on + strand, within LRK53_RS03005 at 699.581 kb on + strand, within LRK53_RS03005 at 699.581 kb on + strand, within LRK53_RS03005 at 699.581 kb on + strand, within LRK53_RS03005 at 699.582 kb on - strand, within LRK53_RS03005 at 699.701 kb on + strand, within LRK53_RS03005 at 699.701 kb on + strand, within LRK53_RS03005 at 699.701 kb on + strand, within LRK53_RS03005 at 699.701 kb on + strand, within LRK53_RS03005 at 699.701 kb on + strand, within LRK53_RS03005 at 699.701 kb on + strand, within LRK53_RS03005 at 699.702 kb on - strand, within LRK53_RS03005 at 699.702 kb on - strand, within LRK53_RS03005 at 699.702 kb on - strand, within LRK53_RS03005 at 699.702 kb on - strand, within LRK53_RS03005 at 699.878 kb on + strand, within LRK53_RS03005 at 699.878 kb on + strand, within LRK53_RS03005 at 699.878 kb on + strand, within LRK53_RS03005 at 699.879 kb on - strand, within LRK53_RS03005 at 699.879 kb on - strand, within LRK53_RS03005 at 700.023 kb on - strand, within LRK53_RS03005 at 700.111 kb on + strand at 700.111 kb on + strand at 700.112 kb on - strand at 700.112 kb on - strand at 700.198 kb on + strand at 700.199 kb on - strand at 700.508 kb on - strand, within LRK53_RS03010 at 700.679 kb on - strand, within LRK53_RS03010
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 698,522 + -1.7 698,522 + -2.2 698,522 + -1.6 698,523 - -1.1 698,523 - -1.1 698,523 - -0.4 698,523 - +1.1 698,523 - -1.2 698,783 + LRK53_RS03000 0.26 -1.1 698,783 + LRK53_RS03000 0.26 -1.1 698,783 + LRK53_RS03000 0.26 -1.9 698,783 + LRK53_RS03000 0.26 -0.4 698,783 + LRK53_RS03000 0.26 -0.8 698,783 + LRK53_RS03000 0.26 -1.7 698,783 + LRK53_RS03000 0.26 -2.0 698,783 + LRK53_RS03000 0.26 -1.2 698,783 + LRK53_RS03000 0.26 +1.4 698,784 - LRK53_RS03000 0.26 -0.8 698,784 - LRK53_RS03000 0.26 -2.6 698,784 - LRK53_RS03000 0.26 -0.4 698,784 - LRK53_RS03000 0.26 -0.3 698,784 - LRK53_RS03000 0.26 -2.3 698,784 - LRK53_RS03000 0.26 -1.6 698,784 - LRK53_RS03000 0.26 -0.5 699,131 + LRK53_RS03000 0.65 -0.5 699,131 + LRK53_RS03000 0.65 +0.2 699,131 + LRK53_RS03000 0.65 -0.4 699,131 + LRK53_RS03000 0.65 -0.7 699,131 + LRK53_RS03000 0.65 +0.0 699,131 + LRK53_RS03000 0.65 -1.9 699,131 + LRK53_RS03000 0.65 -0.6 699,131 + LRK53_RS03000 0.65 -0.2 699,131 + LRK53_RS03000 0.65 +0.3 699,132 - LRK53_RS03000 0.66 +0.7 699,132 - LRK53_RS03000 0.66 -2.2 699,132 - LRK53_RS03000 0.66 +0.4 699,338 + LRK53_RS03000 0.89 -0.4 699,338 + LRK53_RS03000 0.89 -0.1 699,338 + LRK53_RS03000 0.89 +0.0 699,338 + LRK53_RS03000 0.89 -1.6 699,339 - LRK53_RS03000 0.89 -0.2 699,339 - LRK53_RS03000 0.89 -2.5 699,339 - LRK53_RS03000 0.89 -0.2 699,339 - LRK53_RS03000 0.89 +2.7 699,339 - LRK53_RS03000 0.89 -0.2 699,371 + +0.4 699,371 + -1.4 699,371 + +0.5 699,371 + +1.1 699,371 + -0.4 699,372 - -0.4 699,372 - -0.9 699,372 - -1.6 699,372 - -0.7 699,372 - -0.7 699,372 - -2.0 699,467 + -2.0 699,480 + -1.0 699,480 + -1.2 699,481 - +0.3 699,481 - -0.2 699,481 - +0.1 699,481 - -0.6 699,581 + LRK53_RS03005 0.11 +1.0 699,581 + LRK53_RS03005 0.11 +1.0 699,581 + LRK53_RS03005 0.11 -0.3 699,581 + LRK53_RS03005 0.11 -1.2 699,581 + LRK53_RS03005 0.11 +0.2 699,582 - LRK53_RS03005 0.12 -1.1 699,701 + LRK53_RS03005 0.32 -0.8 699,701 + LRK53_RS03005 0.32 -0.6 699,701 + LRK53_RS03005 0.32 -0.4 699,701 + LRK53_RS03005 0.32 -1.8 699,701 + LRK53_RS03005 0.32 +0.0 699,701 + LRK53_RS03005 0.32 -1.8 699,702 - LRK53_RS03005 0.32 -1.1 699,702 - LRK53_RS03005 0.32 -0.5 699,702 - LRK53_RS03005 0.32 -2.2 699,702 - LRK53_RS03005 0.32 -0.2 699,878 + LRK53_RS03005 0.63 -3.1 699,878 + LRK53_RS03005 0.63 -0.2 699,878 + LRK53_RS03005 0.63 -2.2 699,879 - LRK53_RS03005 0.63 -1.0 699,879 - LRK53_RS03005 0.63 -1.9 700,023 - LRK53_RS03005 0.88 -0.2 700,111 + -0.9 700,111 + -3.0 700,112 - -2.2 700,112 - -1.2 700,198 + -1.7 700,199 - -2.5 700,508 - LRK53_RS03010 0.14 -0.3 700,679 - LRK53_RS03010 0.36 +0.0
Or see this region's nucleotide sequence