Experiment: biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00645 and LRK53_RS00650 are separated by 206 nucleotides LRK53_RS00650 and LRK53_RS00655 are separated by 84 nucleotides LRK53_RS00655 and LRK53_RS00660 are separated by 84 nucleotides LRK53_RS00660 and LRK53_RS00665 are separated by 145 nucleotides
LRK53_RS00645: LRK53_RS00645 - GTP cyclohydrolase I FolE, at 146,620 to 147,243
_RS00645
LRK53_RS00650: LRK53_RS00650 - RNA polymerase sigma factor, at 147,450 to 148,154
_RS00650
LRK53_RS00655: LRK53_RS00655 - TlpA family protein disulfide reductase, at 148,239 to 149,051
_RS00655
LRK53_RS00660: LRK53_RS00660 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 149,136 to 149,771
_RS00660
LRK53_RS00665: LRK53_RS00665 - phosphogluconate dehydratase, at 149,917 to 151,734
_RS00665
Position (kb) 148
149
150 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 147.256 kb on - strand at 147.435 kb on + strand at 147.435 kb on + strand at 147.435 kb on + strand at 147.435 kb on + strand at 147.435 kb on + strand at 147.435 kb on + strand at 147.435 kb on + strand at 147.436 kb on - strand at 147.436 kb on - strand at 147.436 kb on - strand at 147.436 kb on - strand at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.642 kb on + strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.643 kb on - strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.644 kb on + strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.645 kb on - strand, within LRK53_RS00650 at 147.654 kb on + strand, within LRK53_RS00650 at 147.654 kb on + strand, within LRK53_RS00650 at 147.655 kb on - strand, within LRK53_RS00650 at 147.655 kb on - strand, within LRK53_RS00650 at 147.655 kb on - strand, within LRK53_RS00650 at 147.924 kb on + strand, within LRK53_RS00650 at 147.924 kb on + strand, within LRK53_RS00650 at 147.924 kb on + strand, within LRK53_RS00650 at 147.924 kb on + strand, within LRK53_RS00650 at 147.924 kb on + strand, within LRK53_RS00650 at 147.925 kb on - strand, within LRK53_RS00650 at 147.925 kb on - strand, within LRK53_RS00650 at 147.925 kb on - strand, within LRK53_RS00650 at 147.925 kb on - strand, within LRK53_RS00650 at 147.925 kb on - strand, within LRK53_RS00650 at 147.925 kb on - strand, within LRK53_RS00650 at 147.925 kb on - strand, within LRK53_RS00650 at 147.925 kb on - strand, within LRK53_RS00650 at 147.925 kb on - strand, within LRK53_RS00650 at 148.011 kb on + strand, within LRK53_RS00650 at 148.011 kb on + strand, within LRK53_RS00650 at 148.163 kb on - strand at 148.163 kb on - strand at 148.163 kb on - strand at 148.163 kb on - strand at 148.372 kb on + strand, within LRK53_RS00655 at 148.372 kb on + strand, within LRK53_RS00655 at 148.372 kb on + strand, within LRK53_RS00655 at 148.372 kb on + strand, within LRK53_RS00655 at 148.372 kb on + strand, within LRK53_RS00655 at 148.372 kb on + strand, within LRK53_RS00655 at 148.372 kb on + strand, within LRK53_RS00655 at 148.372 kb on + strand, within LRK53_RS00655 at 148.372 kb on + strand, within LRK53_RS00655 at 148.372 kb on + strand, within LRK53_RS00655 at 148.372 kb on + strand, within LRK53_RS00655 at 148.372 kb on + strand, within LRK53_RS00655 at 148.372 kb on + strand, within LRK53_RS00655 at 148.373 kb on - strand, within LRK53_RS00655 at 148.373 kb on - strand, within LRK53_RS00655 at 148.373 kb on - strand, within LRK53_RS00655 at 148.373 kb on - strand, within LRK53_RS00655 at 148.373 kb on - strand, within LRK53_RS00655 at 148.373 kb on - strand, within LRK53_RS00655 at 148.373 kb on - strand, within LRK53_RS00655 at 148.373 kb on - strand, within LRK53_RS00655 at 148.505 kb on + strand, within LRK53_RS00655 at 148.505 kb on + strand, within LRK53_RS00655 at 148.505 kb on + strand, within LRK53_RS00655 at 148.505 kb on + strand, within LRK53_RS00655 at 148.505 kb on + strand, within LRK53_RS00655 at 148.505 kb on + strand, within LRK53_RS00655 at 148.505 kb on + strand, within LRK53_RS00655 at 148.505 kb on + strand, within LRK53_RS00655 at 148.505 kb on + strand, within LRK53_RS00655 at 148.505 kb on + strand, within LRK53_RS00655 at 148.506 kb on - strand, within LRK53_RS00655 at 148.506 kb on - strand, within LRK53_RS00655 at 148.506 kb on - strand, within LRK53_RS00655 at 148.506 kb on - strand, within LRK53_RS00655 at 148.506 kb on - strand, within LRK53_RS00655 at 148.506 kb on - strand, within LRK53_RS00655 at 148.506 kb on - strand, within LRK53_RS00655 at 148.678 kb on + strand, within LRK53_RS00655 at 148.678 kb on + strand, within LRK53_RS00655 at 148.678 kb on + strand, within LRK53_RS00655 at 148.679 kb on - strand, within LRK53_RS00655 at 148.679 kb on - strand, within LRK53_RS00655 at 148.679 kb on - strand, within LRK53_RS00655 at 148.679 kb on - strand, within LRK53_RS00655 at 148.679 kb on - strand, within LRK53_RS00655 at 148.679 kb on - strand, within LRK53_RS00655 at 148.861 kb on + strand, within LRK53_RS00655 at 148.861 kb on + strand, within LRK53_RS00655 at 148.861 kb on + strand, within LRK53_RS00655 at 148.861 kb on + strand, within LRK53_RS00655 at 148.861 kb on + strand, within LRK53_RS00655 at 148.862 kb on - strand, within LRK53_RS00655 at 148.862 kb on - strand, within LRK53_RS00655 at 148.862 kb on - strand, within LRK53_RS00655 at 148.885 kb on + strand, within LRK53_RS00655 at 148.885 kb on + strand, within LRK53_RS00655 at 148.885 kb on + strand, within LRK53_RS00655 at 148.886 kb on - strand, within LRK53_RS00655 at 148.886 kb on - strand, within LRK53_RS00655 at 148.886 kb on - strand, within LRK53_RS00655 at 148.927 kb on + strand, within LRK53_RS00655 at 148.927 kb on + strand, within LRK53_RS00655 at 148.927 kb on + strand, within LRK53_RS00655 at 148.927 kb on + strand, within LRK53_RS00655 at 148.927 kb on + strand, within LRK53_RS00655 at 148.927 kb on + strand, within LRK53_RS00655 at 148.928 kb on - strand, within LRK53_RS00655 at 148.928 kb on - strand, within LRK53_RS00655 at 148.928 kb on - strand, within LRK53_RS00655 at 148.928 kb on - strand, within LRK53_RS00655 at 148.928 kb on - strand, within LRK53_RS00655 at 148.928 kb on - strand, within LRK53_RS00655 at 148.928 kb on - strand, within LRK53_RS00655 at 149.112 kb on - strand at 149.859 kb on + strand at 149.859 kb on + strand at 149.859 kb on + strand at 149.860 kb on - strand at 149.860 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 147,256 - +0.9 147,435 + -0.6 147,435 + -0.7 147,435 + +3.1 147,435 + +0.8 147,435 + -0.8 147,435 + -1.1 147,435 + +0.1 147,436 - -1.7 147,436 - -1.9 147,436 - -1.7 147,436 - -1.2 147,642 + LRK53_RS00650 0.27 -0.1 147,642 + LRK53_RS00650 0.27 -1.3 147,642 + LRK53_RS00650 0.27 -0.1 147,642 + LRK53_RS00650 0.27 +2.0 147,642 + LRK53_RS00650 0.27 +2.9 147,642 + LRK53_RS00650 0.27 +0.8 147,642 + LRK53_RS00650 0.27 -2.1 147,642 + LRK53_RS00650 0.27 -0.6 147,642 + LRK53_RS00650 0.27 -0.4 147,642 + LRK53_RS00650 0.27 +2.1 147,642 + LRK53_RS00650 0.27 +0.7 147,642 + LRK53_RS00650 0.27 -2.3 147,642 + LRK53_RS00650 0.27 -0.7 147,643 - LRK53_RS00650 0.27 -0.9 147,643 - LRK53_RS00650 0.27 +0.8 147,643 - LRK53_RS00650 0.27 -0.4 147,643 - LRK53_RS00650 0.27 -1.7 147,643 - LRK53_RS00650 0.27 -0.9 147,643 - LRK53_RS00650 0.27 +2.3 147,643 - LRK53_RS00650 0.27 -0.9 147,643 - LRK53_RS00650 0.27 -0.9 147,643 - LRK53_RS00650 0.27 -0.6 147,643 - LRK53_RS00650 0.27 +1.1 147,643 - LRK53_RS00650 0.27 -0.7 147,643 - LRK53_RS00650 0.27 +0.9 147,643 - LRK53_RS00650 0.27 +1.2 147,643 - LRK53_RS00650 0.27 -0.2 147,643 - LRK53_RS00650 0.27 -2.1 147,643 - LRK53_RS00650 0.27 +1.7 147,643 - LRK53_RS00650 0.27 -1.6 147,643 - LRK53_RS00650 0.27 -0.7 147,643 - LRK53_RS00650 0.27 -1.1 147,643 - LRK53_RS00650 0.27 -0.8 147,643 - LRK53_RS00650 0.27 -2.7 147,643 - LRK53_RS00650 0.27 -0.8 147,643 - LRK53_RS00650 0.27 -0.8 147,644 + LRK53_RS00650 0.28 -0.6 147,644 + LRK53_RS00650 0.28 +2.7 147,644 + LRK53_RS00650 0.28 -0.6 147,644 + LRK53_RS00650 0.28 +0.1 147,644 + LRK53_RS00650 0.28 +1.6 147,644 + LRK53_RS00650 0.28 -0.2 147,644 + LRK53_RS00650 0.28 +0.5 147,644 + LRK53_RS00650 0.28 -1.2 147,644 + LRK53_RS00650 0.28 +1.1 147,644 + LRK53_RS00650 0.28 +1.9 147,644 + LRK53_RS00650 0.28 -1.4 147,644 + LRK53_RS00650 0.28 -0.8 147,645 - LRK53_RS00650 0.28 -0.5 147,645 - LRK53_RS00650 0.28 -1.3 147,645 - LRK53_RS00650 0.28 -1.3 147,645 - LRK53_RS00650 0.28 -1.0 147,645 - LRK53_RS00650 0.28 -0.1 147,645 - LRK53_RS00650 0.28 +1.2 147,645 - LRK53_RS00650 0.28 -2.4 147,645 - LRK53_RS00650 0.28 -0.9 147,645 - LRK53_RS00650 0.28 +0.8 147,645 - LRK53_RS00650 0.28 -0.5 147,645 - LRK53_RS00650 0.28 -0.1 147,645 - LRK53_RS00650 0.28 -0.7 147,645 - LRK53_RS00650 0.28 -2.4 147,645 - LRK53_RS00650 0.28 +0.1 147,654 + LRK53_RS00650 0.29 -1.2 147,654 + LRK53_RS00650 0.29 -0.6 147,655 - LRK53_RS00650 0.29 +1.4 147,655 - LRK53_RS00650 0.29 +2.3 147,655 - LRK53_RS00650 0.29 +0.1 147,924 + LRK53_RS00650 0.67 -0.2 147,924 + LRK53_RS00650 0.67 -0.7 147,924 + LRK53_RS00650 0.67 +1.1 147,924 + LRK53_RS00650 0.67 +0.6 147,924 + LRK53_RS00650 0.67 +0.7 147,925 - LRK53_RS00650 0.67 -1.0 147,925 - LRK53_RS00650 0.67 -0.8 147,925 - LRK53_RS00650 0.67 +0.1 147,925 - LRK53_RS00650 0.67 -1.1 147,925 - LRK53_RS00650 0.67 -1.4 147,925 - LRK53_RS00650 0.67 +0.3 147,925 - LRK53_RS00650 0.67 -0.1 147,925 - LRK53_RS00650 0.67 -0.9 147,925 - LRK53_RS00650 0.67 -2.1 148,011 + LRK53_RS00650 0.80 +0.9 148,011 + LRK53_RS00650 0.80 -0.4 148,163 - -1.0 148,163 - -1.4 148,163 - -1.2 148,163 - +1.3 148,372 + LRK53_RS00655 0.16 -1.1 148,372 + LRK53_RS00655 0.16 -0.4 148,372 + LRK53_RS00655 0.16 +1.1 148,372 + LRK53_RS00655 0.16 -1.1 148,372 + LRK53_RS00655 0.16 +1.4 148,372 + LRK53_RS00655 0.16 -0.3 148,372 + LRK53_RS00655 0.16 +0.4 148,372 + LRK53_RS00655 0.16 +0.8 148,372 + LRK53_RS00655 0.16 -0.9 148,372 + LRK53_RS00655 0.16 +1.0 148,372 + LRK53_RS00655 0.16 -2.0 148,372 + LRK53_RS00655 0.16 -0.7 148,372 + LRK53_RS00655 0.16 -1.2 148,373 - LRK53_RS00655 0.16 +0.6 148,373 - LRK53_RS00655 0.16 -0.1 148,373 - LRK53_RS00655 0.16 -1.3 148,373 - LRK53_RS00655 0.16 -1.1 148,373 - LRK53_RS00655 0.16 -0.9 148,373 - LRK53_RS00655 0.16 +0.2 148,373 - LRK53_RS00655 0.16 +0.0 148,373 - LRK53_RS00655 0.16 -1.6 148,505 + LRK53_RS00655 0.33 -0.1 148,505 + LRK53_RS00655 0.33 +0.9 148,505 + LRK53_RS00655 0.33 -0.5 148,505 + LRK53_RS00655 0.33 -2.4 148,505 + LRK53_RS00655 0.33 +0.9 148,505 + LRK53_RS00655 0.33 -2.3 148,505 + LRK53_RS00655 0.33 -1.7 148,505 + LRK53_RS00655 0.33 +0.8 148,505 + LRK53_RS00655 0.33 +1.0 148,505 + LRK53_RS00655 0.33 -0.0 148,506 - LRK53_RS00655 0.33 -0.9 148,506 - LRK53_RS00655 0.33 +0.1 148,506 - LRK53_RS00655 0.33 -1.8 148,506 - LRK53_RS00655 0.33 -0.1 148,506 - LRK53_RS00655 0.33 -1.3 148,506 - LRK53_RS00655 0.33 -0.3 148,506 - LRK53_RS00655 0.33 +0.7 148,678 + LRK53_RS00655 0.54 -0.2 148,678 + LRK53_RS00655 0.54 -0.8 148,678 + LRK53_RS00655 0.54 -1.6 148,679 - LRK53_RS00655 0.54 -0.1 148,679 - LRK53_RS00655 0.54 -0.5 148,679 - LRK53_RS00655 0.54 -1.8 148,679 - LRK53_RS00655 0.54 -0.8 148,679 - LRK53_RS00655 0.54 -0.2 148,679 - LRK53_RS00655 0.54 -0.1 148,861 + LRK53_RS00655 0.77 -2.2 148,861 + LRK53_RS00655 0.77 -0.2 148,861 + LRK53_RS00655 0.77 -0.4 148,861 + LRK53_RS00655 0.77 +0.2 148,861 + LRK53_RS00655 0.77 -1.1 148,862 - LRK53_RS00655 0.77 -0.9 148,862 - LRK53_RS00655 0.77 +2.6 148,862 - LRK53_RS00655 0.77 -2.2 148,885 + LRK53_RS00655 0.79 -1.6 148,885 + LRK53_RS00655 0.79 +0.1 148,885 + LRK53_RS00655 0.79 +0.1 148,886 - LRK53_RS00655 0.80 -1.8 148,886 - LRK53_RS00655 0.80 +2.3 148,886 - LRK53_RS00655 0.80 -0.9 148,927 + LRK53_RS00655 0.85 +0.5 148,927 + LRK53_RS00655 0.85 -0.9 148,927 + LRK53_RS00655 0.85 +0.6 148,927 + LRK53_RS00655 0.85 +0.1 148,927 + LRK53_RS00655 0.85 -1.0 148,927 + LRK53_RS00655 0.85 -0.8 148,928 - LRK53_RS00655 0.85 -0.4 148,928 - LRK53_RS00655 0.85 -2.6 148,928 - LRK53_RS00655 0.85 -1.0 148,928 - LRK53_RS00655 0.85 +0.6 148,928 - LRK53_RS00655 0.85 -1.6 148,928 - LRK53_RS00655 0.85 -1.2 148,928 - LRK53_RS00655 0.85 +1.1 149,112 - +1.1 149,859 + +0.8 149,859 + -1.2 149,859 + -0.4 149,860 - +0.9 149,860 - -0.4
Or see this region's nucleotide sequence