Experiment: biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00385 and LRK53_RS00390 are separated by 185 nucleotides LRK53_RS00390 and LRK53_RS00395 are separated by 217 nucleotides
LRK53_RS00385: LRK53_RS00385 - aldehyde dehydrogenase family protein, at 86,864 to 88,348
_RS00385
LRK53_RS00390: LRK53_RS00390 - 4,5-DOPA dioxygenase extradiol, at 88,534 to 89,331
_RS00390
LRK53_RS00395: LRK53_RS00395 - SDR family oxidoreductase, at 89,549 to 90,313
_RS00395
Position (kb) 88
89
90 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 87.678 kb on + strand, within LRK53_RS00385 at 87.678 kb on + strand, within LRK53_RS00385 at 87.678 kb on + strand, within LRK53_RS00385 at 87.678 kb on + strand, within LRK53_RS00385 at 87.679 kb on - strand, within LRK53_RS00385 at 87.679 kb on - strand, within LRK53_RS00385 at 87.679 kb on - strand, within LRK53_RS00385 at 87.679 kb on - strand, within LRK53_RS00385 at 87.679 kb on - strand, within LRK53_RS00385 at 87.679 kb on - strand, within LRK53_RS00385 at 87.966 kb on + strand, within LRK53_RS00385 at 88.236 kb on + strand at 88.237 kb on - strand at 88.237 kb on - strand at 88.317 kb on + strand at 88.317 kb on + strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.348 kb on + strand at 88.348 kb on + strand at 88.348 kb on + strand at 88.349 kb on - strand at 88.477 kb on - strand at 88.477 kb on - strand at 88.497 kb on + strand at 88.497 kb on + strand at 88.497 kb on + strand at 88.497 kb on + strand at 88.497 kb on + strand at 88.497 kb on + strand at 88.497 kb on + strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.505 kb on + strand at 88.505 kb on + strand at 88.505 kb on + strand at 88.505 kb on + strand at 88.505 kb on + strand at 88.505 kb on + strand at 88.506 kb on - strand at 88.506 kb on - strand at 88.506 kb on - strand at 88.548 kb on + strand at 88.548 kb on + strand at 88.549 kb on - strand at 88.696 kb on + strand, within LRK53_RS00390 at 88.696 kb on + strand, within LRK53_RS00390 at 88.697 kb on - strand, within LRK53_RS00390 at 88.697 kb on - strand, within LRK53_RS00390 at 88.697 kb on - strand, within LRK53_RS00390 at 88.697 kb on - strand, within LRK53_RS00390 at 88.697 kb on - strand, within LRK53_RS00390 at 88.786 kb on + strand, within LRK53_RS00390 at 88.787 kb on - strand, within LRK53_RS00390 at 88.787 kb on - strand, within LRK53_RS00390 at 88.909 kb on + strand, within LRK53_RS00390 at 88.910 kb on - strand, within LRK53_RS00390 at 88.910 kb on - strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.168 kb on - strand, within LRK53_RS00390 at 89.168 kb on - strand, within LRK53_RS00390 at 89.168 kb on - strand, within LRK53_RS00390 at 89.218 kb on + strand, within LRK53_RS00390 at 89.218 kb on + strand, within LRK53_RS00390 at 89.219 kb on - strand, within LRK53_RS00390 at 89.219 kb on - strand, within LRK53_RS00390 at 89.219 kb on - strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.287 kb on - strand at 89.343 kb on + strand at 89.343 kb on + strand at 89.344 kb on - strand at 89.344 kb on - strand at 89.484 kb on + strand at 89.484 kb on + strand at 89.485 kb on - strand at 89.485 kb on - strand at 89.485 kb on - strand at 89.485 kb on - strand at 89.748 kb on - strand, within LRK53_RS00395 at 89.748 kb on - strand, within LRK53_RS00395 at 89.872 kb on - strand, within LRK53_RS00395 at 89.872 kb on - strand, within LRK53_RS00395 at 89.872 kb on - strand, within LRK53_RS00395 at 89.952 kb on + strand, within LRK53_RS00395 at 89.953 kb on - strand, within LRK53_RS00395 at 89.953 kb on - strand, within LRK53_RS00395 at 90.077 kb on + strand, within LRK53_RS00395 at 90.078 kb on - strand, within LRK53_RS00395 at 90.078 kb on - strand, within LRK53_RS00395
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 87,678 + LRK53_RS00385 0.55 +0.4 87,678 + LRK53_RS00385 0.55 -0.8 87,678 + LRK53_RS00385 0.55 -1.6 87,678 + LRK53_RS00385 0.55 -1.1 87,679 - LRK53_RS00385 0.55 +0.4 87,679 - LRK53_RS00385 0.55 +2.4 87,679 - LRK53_RS00385 0.55 -0.1 87,679 - LRK53_RS00385 0.55 -1.1 87,679 - LRK53_RS00385 0.55 +2.6 87,679 - LRK53_RS00385 0.55 -0.0 87,966 + LRK53_RS00385 0.74 -1.6 88,236 + -0.1 88,237 - -0.2 88,237 - -1.8 88,317 + -1.7 88,317 + -1.3 88,318 - +1.1 88,318 - -3.3 88,318 - -0.2 88,318 - -2.4 88,318 - -1.6 88,318 - -1.7 88,318 - -3.0 88,318 - -1.2 88,348 + -0.7 88,348 + -2.1 88,348 + -0.4 88,349 - +2.1 88,477 - -3.2 88,477 - +0.3 88,497 + +0.5 88,497 + -2.5 88,497 + -0.8 88,497 + -1.6 88,497 + -0.1 88,497 + -1.1 88,497 + -0.5 88,498 - -3.0 88,498 - +0.5 88,498 - -1.3 88,498 - +0.1 88,498 - +0.3 88,498 - -0.4 88,498 - -0.4 88,498 - -0.6 88,498 - -1.0 88,505 + -1.1 88,505 + -0.3 88,505 + -0.2 88,505 + -0.9 88,505 + -1.8 88,505 + -1.1 88,506 - -1.5 88,506 - +0.1 88,506 - -1.7 88,548 + -0.8 88,548 + -1.6 88,549 - -1.8 88,696 + LRK53_RS00390 0.20 -1.7 88,696 + LRK53_RS00390 0.20 -2.2 88,697 - LRK53_RS00390 0.20 -1.2 88,697 - LRK53_RS00390 0.20 -1.6 88,697 - LRK53_RS00390 0.20 -2.4 88,697 - LRK53_RS00390 0.20 -0.1 88,697 - LRK53_RS00390 0.20 +0.0 88,786 + LRK53_RS00390 0.32 +0.6 88,787 - LRK53_RS00390 0.32 -1.3 88,787 - LRK53_RS00390 0.32 -1.2 88,909 + LRK53_RS00390 0.47 +1.3 88,910 - LRK53_RS00390 0.47 -1.5 88,910 - LRK53_RS00390 0.47 -0.1 89,062 + LRK53_RS00390 0.66 -0.5 89,062 + LRK53_RS00390 0.66 -1.4 89,062 + LRK53_RS00390 0.66 -0.3 89,062 + LRK53_RS00390 0.66 -1.1 89,062 + LRK53_RS00390 0.66 -0.6 89,062 + LRK53_RS00390 0.66 -1.3 89,062 + LRK53_RS00390 0.66 +0.8 89,062 + LRK53_RS00390 0.66 -0.8 89,062 + LRK53_RS00390 0.66 +1.9 89,062 + LRK53_RS00390 0.66 -1.5 89,062 + LRK53_RS00390 0.66 -0.2 89,062 + LRK53_RS00390 0.66 -1.4 89,062 + LRK53_RS00390 0.66 +0.2 89,062 + LRK53_RS00390 0.66 -0.2 89,062 + LRK53_RS00390 0.66 +1.0 89,062 + LRK53_RS00390 0.66 -0.5 89,062 + LRK53_RS00390 0.66 -1.1 89,062 + LRK53_RS00390 0.66 -1.1 89,062 + LRK53_RS00390 0.66 +0.9 89,062 + LRK53_RS00390 0.66 -2.0 89,062 + LRK53_RS00390 0.66 -1.9 89,062 + LRK53_RS00390 0.66 -0.4 89,062 + LRK53_RS00390 0.66 -0.2 89,062 + LRK53_RS00390 0.66 -1.5 89,062 + LRK53_RS00390 0.66 -0.8 89,062 + LRK53_RS00390 0.66 -0.2 89,062 + LRK53_RS00390 0.66 +0.1 89,062 + LRK53_RS00390 0.66 -0.1 89,062 + LRK53_RS00390 0.66 -1.3 89,062 + LRK53_RS00390 0.66 +0.1 89,062 + LRK53_RS00390 0.66 -0.2 89,062 + LRK53_RS00390 0.66 -0.5 89,062 + LRK53_RS00390 0.66 -1.8 89,062 + LRK53_RS00390 0.66 -1.3 89,063 - LRK53_RS00390 0.66 -2.4 89,063 - LRK53_RS00390 0.66 -0.2 89,063 - LRK53_RS00390 0.66 -0.9 89,063 - LRK53_RS00390 0.66 -1.3 89,063 - LRK53_RS00390 0.66 +0.2 89,063 - LRK53_RS00390 0.66 -2.8 89,063 - LRK53_RS00390 0.66 +0.9 89,063 - LRK53_RS00390 0.66 -0.8 89,063 - LRK53_RS00390 0.66 -0.2 89,063 - LRK53_RS00390 0.66 -1.7 89,063 - LRK53_RS00390 0.66 +0.1 89,063 - LRK53_RS00390 0.66 -1.6 89,063 - LRK53_RS00390 0.66 -1.0 89,063 - LRK53_RS00390 0.66 -1.0 89,063 - LRK53_RS00390 0.66 +2.8 89,063 - LRK53_RS00390 0.66 -1.5 89,063 - LRK53_RS00390 0.66 -1.0 89,063 - LRK53_RS00390 0.66 -0.1 89,063 - LRK53_RS00390 0.66 -1.4 89,063 - LRK53_RS00390 0.66 -0.2 89,167 + LRK53_RS00390 0.79 -1.1 89,167 + LRK53_RS00390 0.79 +1.9 89,167 + LRK53_RS00390 0.79 -0.7 89,167 + LRK53_RS00390 0.79 -0.2 89,167 + LRK53_RS00390 0.79 -2.1 89,167 + LRK53_RS00390 0.79 -0.2 89,167 + LRK53_RS00390 0.79 -0.6 89,168 - LRK53_RS00390 0.79 -1.5 89,168 - LRK53_RS00390 0.79 -1.2 89,168 - LRK53_RS00390 0.79 +0.6 89,218 + LRK53_RS00390 0.86 -0.4 89,218 + LRK53_RS00390 0.86 -1.4 89,219 - LRK53_RS00390 0.86 -0.2 89,219 - LRK53_RS00390 0.86 -0.6 89,219 - LRK53_RS00390 0.86 -1.4 89,233 + LRK53_RS00390 0.88 -1.1 89,233 + LRK53_RS00390 0.88 -0.1 89,233 + LRK53_RS00390 0.88 -0.6 89,233 + LRK53_RS00390 0.88 -1.4 89,233 + LRK53_RS00390 0.88 +0.3 89,233 + LRK53_RS00390 0.88 -1.0 89,233 + LRK53_RS00390 0.88 +0.1 89,234 - LRK53_RS00390 0.88 -2.9 89,234 - LRK53_RS00390 0.88 -4.4 89,234 - LRK53_RS00390 0.88 -1.4 89,234 - LRK53_RS00390 0.88 +1.5 89,234 - LRK53_RS00390 0.88 -1.5 89,234 - LRK53_RS00390 0.88 -0.7 89,234 - LRK53_RS00390 0.88 -1.6 89,234 - LRK53_RS00390 0.88 -1.1 89,234 - LRK53_RS00390 0.88 -0.1 89,234 - LRK53_RS00390 0.88 -2.0 89,234 - LRK53_RS00390 0.88 -0.5 89,234 - LRK53_RS00390 0.88 +0.3 89,234 - LRK53_RS00390 0.88 +0.8 89,234 - LRK53_RS00390 0.88 +1.1 89,287 - -0.9 89,343 + +1.8 89,343 + -2.0 89,344 - -1.3 89,344 - +0.3 89,484 + -3.1 89,484 + -0.8 89,485 - -0.1 89,485 - +0.4 89,485 - -1.3 89,485 - +0.1 89,748 - LRK53_RS00395 0.26 -2.5 89,748 - LRK53_RS00395 0.26 -0.8 89,872 - LRK53_RS00395 0.42 -1.3 89,872 - LRK53_RS00395 0.42 +0.8 89,872 - LRK53_RS00395 0.42 -0.1 89,952 + LRK53_RS00395 0.53 -1.7 89,953 - LRK53_RS00395 0.53 -0.2 89,953 - LRK53_RS00395 0.53 -0.5 90,077 + LRK53_RS00395 0.69 +1.8 90,078 - LRK53_RS00395 0.69 -0.2 90,078 - LRK53_RS00395 0.69 +0.3
Or see this region's nucleotide sequence