Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS43635 and QEN71_RS43640 overlap by 13 nucleotides QEN71_RS43640 and QEN71_RS43645 are separated by 217 nucleotides QEN71_RS43645 and QEN71_RS43650 are separated by 79 nucleotides QEN71_RS43650 and QEN71_RS43655 are separated by 12 nucleotides QEN71_RS43655 and QEN71_RS43660 are separated by 168 nucleotides
QEN71_RS43635: QEN71_RS43635 - SMC family ATPase, at 206,218 to 208,539
_RS43635
QEN71_RS43640: QEN71_RS43640 - hypothetical protein, at 208,527 to 209,060
_RS43640
QEN71_RS43645: QEN71_RS43645 - metallophosphatase family protein, at 209,278 to 210,609
_RS43645
QEN71_RS43650: QEN71_RS43650 - NADAR family protein, at 210,689 to 211,171
_RS43650
QEN71_RS43655: QEN71_RS43655 - hypothetical protein, at 211,184 to 211,393
_RS43655
QEN71_RS43660: QEN71_RS43660 - hypothetical protein, at 211,562 to 212,872
_RS43660
Position (kb) 209
210
211 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 208.505 kb on + strand at 209.121 kb on + strand at 209.149 kb on + strand at 209.159 kb on + strand at 209.160 kb on - strand at 209.280 kb on - strand at 209.370 kb on + strand at 209.370 kb on + strand at 209.370 kb on + strand at 209.515 kb on + strand, within QEN71_RS43645 at 209.516 kb on - strand, within QEN71_RS43645 at 209.728 kb on - strand, within QEN71_RS43645 at 209.907 kb on + strand, within QEN71_RS43645 at 210.223 kb on - strand, within QEN71_RS43645 at 210.423 kb on + strand, within QEN71_RS43645 at 210.424 kb on - strand, within QEN71_RS43645 at 210.441 kb on + strand, within QEN71_RS43645 at 210.493 kb on - strand at 210.814 kb on - strand, within QEN71_RS43650 at 210.907 kb on - strand, within QEN71_RS43650 at 210.907 kb on - strand, within QEN71_RS43650 at 210.907 kb on - strand, within QEN71_RS43650 at 211.092 kb on + strand, within QEN71_RS43650 at 211.146 kb on - strand at 211.161 kb on - strand at 211.186 kb on - strand at 211.186 kb on - strand at 211.393 kb on + strand at 211.394 kb on - strand at 211.402 kb on + strand at 211.403 kb on - strand at 211.563 kb on + strand at 211.569 kb on + strand at 211.570 kb on - strand at 211.570 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 208,505 + -0.5 209,121 + -0.1 209,149 + +0.6 209,159 + +0.1 209,160 - +0.8 209,280 - +0.0 209,370 + -0.1 209,370 + +0.1 209,370 + -0.4 209,515 + QEN71_RS43645 0.18 +1.0 209,516 - QEN71_RS43645 0.18 +2.1 209,728 - QEN71_RS43645 0.34 +0.3 209,907 + QEN71_RS43645 0.47 -4.0 210,223 - QEN71_RS43645 0.71 +0.0 210,423 + QEN71_RS43645 0.86 -0.2 210,424 - QEN71_RS43645 0.86 +0.0 210,441 + QEN71_RS43645 0.87 +1.2 210,493 - +0.1 210,814 - QEN71_RS43650 0.26 +1.4 210,907 - QEN71_RS43650 0.45 -1.1 210,907 - QEN71_RS43650 0.45 -1.5 210,907 - QEN71_RS43650 0.45 +0.3 211,092 + QEN71_RS43650 0.83 -0.2 211,146 - -0.1 211,161 - +1.2 211,186 - -1.6 211,186 - -0.0 211,393 + -0.3 211,394 - +0.1 211,402 + -0.3 211,403 - +0.1 211,563 + -0.7 211,569 + +0.1 211,570 - -0.0 211,570 - -1.4
Or see this region's nucleotide sequence