Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS41530 and QEN71_RS41535 are separated by 263 nucleotides QEN71_RS41535 and QEN71_RS41540 are separated by 123 nucleotides
QEN71_RS41530: QEN71_RS41530 - porin, at 391,313 to 392,488
_RS41530
QEN71_RS41535: QEN71_RS41535 - cupin domain-containing protein, at 392,752 to 393,876
_RS41535
QEN71_RS41540: QEN71_RS41540 - aminotransferase class V-fold PLP-dependent enzyme, at 394,000 to 395,133
_RS41540
Position (kb) 392
393
394 Strain fitness (log2 ratio) -1
0
1
2 at 391.752 kb on + strand, within QEN71_RS41530 at 391.798 kb on + strand, within QEN71_RS41530 at 391.798 kb on + strand, within QEN71_RS41530 at 391.798 kb on + strand, within QEN71_RS41530 at 391.799 kb on - strand, within QEN71_RS41530 at 391.840 kb on + strand, within QEN71_RS41530 at 391.840 kb on + strand, within QEN71_RS41530 at 391.846 kb on - strand, within QEN71_RS41530 at 391.902 kb on + strand, within QEN71_RS41530 at 391.983 kb on - strand, within QEN71_RS41530 at 392.012 kb on - strand, within QEN71_RS41530 at 392.013 kb on + strand, within QEN71_RS41530 at 392.013 kb on + strand, within QEN71_RS41530 at 392.091 kb on + strand, within QEN71_RS41530 at 392.188 kb on + strand, within QEN71_RS41530 at 392.188 kb on + strand, within QEN71_RS41530 at 392.188 kb on + strand, within QEN71_RS41530 at 392.189 kb on - strand, within QEN71_RS41530 at 392.189 kb on - strand, within QEN71_RS41530 at 392.189 kb on - strand, within QEN71_RS41530 at 392.190 kb on + strand, within QEN71_RS41530 at 392.190 kb on + strand, within QEN71_RS41530 at 392.190 kb on + strand, within QEN71_RS41530 at 392.190 kb on + strand, within QEN71_RS41530 at 392.191 kb on - strand, within QEN71_RS41530 at 392.191 kb on - strand, within QEN71_RS41530 at 392.191 kb on - strand, within QEN71_RS41530 at 392.191 kb on - strand, within QEN71_RS41530 at 392.191 kb on - strand, within QEN71_RS41530 at 392.191 kb on - strand, within QEN71_RS41530 at 392.191 kb on - strand, within QEN71_RS41530 at 392.351 kb on + strand, within QEN71_RS41530 at 392.380 kb on - strand at 392.426 kb on - strand at 392.599 kb on + strand at 392.599 kb on + strand at 392.599 kb on + strand at 392.599 kb on + strand at 392.743 kb on - strand at 393.128 kb on + strand, within QEN71_RS41535 at 393.128 kb on + strand, within QEN71_RS41535 at 393.129 kb on - strand, within QEN71_RS41535 at 393.368 kb on + strand, within QEN71_RS41535 at 393.662 kb on - strand, within QEN71_RS41535 at 393.662 kb on - strand, within QEN71_RS41535 at 393.662 kb on - strand, within QEN71_RS41535 at 393.814 kb on + strand at 393.814 kb on + strand at 393.989 kb on - strand at 394.373 kb on + strand, within QEN71_RS41540 at 394.733 kb on + strand, within QEN71_RS41540 at 394.733 kb on + strand, within QEN71_RS41540
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 391,752 + QEN71_RS41530 0.37 -0.2 391,798 + QEN71_RS41530 0.41 +0.5 391,798 + QEN71_RS41530 0.41 +1.7 391,798 + QEN71_RS41530 0.41 +0.1 391,799 - QEN71_RS41530 0.41 +0.3 391,840 + QEN71_RS41530 0.45 -0.2 391,840 + QEN71_RS41530 0.45 -0.7 391,846 - QEN71_RS41530 0.45 -0.5 391,902 + QEN71_RS41530 0.50 -0.6 391,983 - QEN71_RS41530 0.57 -0.2 392,012 - QEN71_RS41530 0.59 +0.1 392,013 + QEN71_RS41530 0.60 +2.0 392,013 + QEN71_RS41530 0.60 -0.3 392,091 + QEN71_RS41530 0.66 +0.6 392,188 + QEN71_RS41530 0.74 -0.9 392,188 + QEN71_RS41530 0.74 +0.2 392,188 + QEN71_RS41530 0.74 -0.3 392,189 - QEN71_RS41530 0.74 -0.3 392,189 - QEN71_RS41530 0.74 -1.1 392,189 - QEN71_RS41530 0.74 -0.4 392,190 + QEN71_RS41530 0.75 +0.1 392,190 + QEN71_RS41530 0.75 +0.9 392,190 + QEN71_RS41530 0.75 +0.6 392,190 + QEN71_RS41530 0.75 -0.3 392,191 - QEN71_RS41530 0.75 -0.3 392,191 - QEN71_RS41530 0.75 -0.4 392,191 - QEN71_RS41530 0.75 -1.4 392,191 - QEN71_RS41530 0.75 -0.1 392,191 - QEN71_RS41530 0.75 -1.2 392,191 - QEN71_RS41530 0.75 +0.0 392,191 - QEN71_RS41530 0.75 +0.3 392,351 + QEN71_RS41530 0.88 -0.9 392,380 - -0.6 392,426 - +0.1 392,599 + +0.7 392,599 + +0.2 392,599 + +1.6 392,599 + -0.7 392,743 - +0.1 393,128 + QEN71_RS41535 0.33 -1.2 393,128 + QEN71_RS41535 0.33 -0.4 393,129 - QEN71_RS41535 0.34 -0.4 393,368 + QEN71_RS41535 0.55 +1.3 393,662 - QEN71_RS41535 0.81 -0.2 393,662 - QEN71_RS41535 0.81 +0.1 393,662 - QEN71_RS41535 0.81 +0.0 393,814 + -0.4 393,814 + +0.3 393,989 - -0.0 394,373 + QEN71_RS41540 0.33 -0.7 394,733 + QEN71_RS41540 0.65 -0.5 394,733 + QEN71_RS41540 0.65 -0.3
Or see this region's nucleotide sequence