Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS34480

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS34475 and QEN71_RS34480 are separated by 162 nucleotidesQEN71_RS34480 and QEN71_RS34485 are separated by 184 nucleotides QEN71_RS34475: QEN71_RS34475 - APC family permease, at 1,048,570 to 1,050,018 _RS34475 QEN71_RS34480: QEN71_RS34480 - porin, at 1,050,181 to 1,051,395 _RS34480 QEN71_RS34485: QEN71_RS34485 - FAD-binding oxidoreductase, at 1,051,580 to 1,052,881 _RS34485 Position (kb) 1050 1051 1052Strain fitness (log2 ratio) -2 -1 0 1 2at 1049.242 kb on + strand, within QEN71_RS34475at 1049.290 kb on + strand, within QEN71_RS34475at 1049.290 kb on + strand, within QEN71_RS34475at 1049.290 kb on + strand, within QEN71_RS34475at 1049.290 kb on + strand, within QEN71_RS34475at 1049.290 kb on + strand, within QEN71_RS34475at 1049.291 kb on - strand, within QEN71_RS34475at 1049.291 kb on - strand, within QEN71_RS34475at 1049.291 kb on - strand, within QEN71_RS34475at 1049.292 kb on + strand, within QEN71_RS34475at 1049.292 kb on + strand, within QEN71_RS34475at 1049.414 kb on - strand, within QEN71_RS34475at 1049.485 kb on + strand, within QEN71_RS34475at 1049.530 kb on + strand, within QEN71_RS34475at 1049.531 kb on - strand, within QEN71_RS34475at 1049.589 kb on + strand, within QEN71_RS34475at 1049.589 kb on + strand, within QEN71_RS34475at 1049.590 kb on - strand, within QEN71_RS34475at 1049.590 kb on - strand, within QEN71_RS34475at 1049.906 kb on - strandat 1050.195 kb on - strandat 1050.195 kb on - strandat 1050.195 kb on - strandat 1050.274 kb on + strandat 1050.275 kb on - strandat 1050.552 kb on + strand, within QEN71_RS34480at 1050.599 kb on - strand, within QEN71_RS34480at 1050.629 kb on - strand, within QEN71_RS34480at 1050.629 kb on - strand, within QEN71_RS34480at 1050.654 kb on + strand, within QEN71_RS34480at 1050.800 kb on - strand, within QEN71_RS34480at 1050.833 kb on - strand, within QEN71_RS34480at 1050.923 kb on - strand, within QEN71_RS34480at 1050.923 kb on - strand, within QEN71_RS34480at 1050.982 kb on - strand, within QEN71_RS34480at 1051.009 kb on + strand, within QEN71_RS34480at 1051.040 kb on - strand, within QEN71_RS34480at 1051.105 kb on + strand, within QEN71_RS34480at 1051.106 kb on - strand, within QEN71_RS34480at 1051.107 kb on + strand, within QEN71_RS34480at 1051.142 kb on - strand, within QEN71_RS34480at 1051.214 kb on - strand, within QEN71_RS34480at 1051.214 kb on - strand, within QEN71_RS34480at 1051.240 kb on + strand, within QEN71_RS34480at 1051.240 kb on + strand, within QEN71_RS34480at 1051.456 kb on + strandat 1051.457 kb on - strandat 1051.458 kb on + strandat 1051.458 kb on + strandat 1051.458 kb on + strandat 1051.459 kb on - strandat 1051.459 kb on - strandat 1051.459 kb on - strandat 1051.459 kb on - strandat 1051.529 kb on - strandat 1051.605 kb on - strandat 1051.605 kb on - strandat 1051.605 kb on - strandat 1051.607 kb on + strandat 1051.926 kb on - strand, within QEN71_RS34485at 1051.961 kb on + strand, within QEN71_RS34485at 1051.971 kb on - strand, within QEN71_RS34485at 1052.037 kb on - strand, within QEN71_RS34485at 1052.048 kb on + strand, within QEN71_RS34485at 1052.093 kb on + strand, within QEN71_RS34485at 1052.114 kb on - strand, within QEN71_RS34485at 1052.202 kb on - strand, within QEN71_RS34485at 1052.202 kb on - strand, within QEN71_RS34485at 1052.202 kb on - strand, within QEN71_RS34485at 1052.225 kb on + strand, within QEN71_RS34485at 1052.348 kb on + strand, within QEN71_RS34485at 1052.355 kb on - strand, within QEN71_RS34485at 1052.355 kb on - strand, within QEN71_RS34485

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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1,049,242 + QEN71_RS34475 0.46 -0.7
1,049,290 + QEN71_RS34475 0.50 -0.9
1,049,290 + QEN71_RS34475 0.50 -0.3
1,049,290 + QEN71_RS34475 0.50 -0.3
1,049,290 + QEN71_RS34475 0.50 -0.6
1,049,290 + QEN71_RS34475 0.50 -0.9
1,049,291 - QEN71_RS34475 0.50 -1.1
1,049,291 - QEN71_RS34475 0.50 -0.1
1,049,291 - QEN71_RS34475 0.50 -0.7
1,049,292 + QEN71_RS34475 0.50 -1.5
1,049,292 + QEN71_RS34475 0.50 -0.2
1,049,414 - QEN71_RS34475 0.58 -0.6
1,049,485 + QEN71_RS34475 0.63 +0.9
1,049,530 + QEN71_RS34475 0.66 -0.8
1,049,531 - QEN71_RS34475 0.66 -1.1
1,049,589 + QEN71_RS34475 0.70 +1.7
1,049,589 + QEN71_RS34475 0.70 +0.2
1,049,590 - QEN71_RS34475 0.70 -1.1
1,049,590 - QEN71_RS34475 0.70 -0.3
1,049,906 - +0.1
1,050,195 - +0.3
1,050,195 - +0.4
1,050,195 - -0.6
1,050,274 + -0.3
1,050,275 - +1.2
1,050,552 + QEN71_RS34480 0.31 +1.2
1,050,599 - QEN71_RS34480 0.34 +0.6
1,050,629 - QEN71_RS34480 0.37 -0.5
1,050,629 - QEN71_RS34480 0.37 -1.5
1,050,654 + QEN71_RS34480 0.39 -0.1
1,050,800 - QEN71_RS34480 0.51 -0.8
1,050,833 - QEN71_RS34480 0.54 +1.2
1,050,923 - QEN71_RS34480 0.61 -0.3
1,050,923 - QEN71_RS34480 0.61 -0.2
1,050,982 - QEN71_RS34480 0.66 +0.0
1,051,009 + QEN71_RS34480 0.68 -0.6
1,051,040 - QEN71_RS34480 0.71 -0.6
1,051,105 + QEN71_RS34480 0.76 +0.8
1,051,106 - QEN71_RS34480 0.76 -0.8
1,051,107 + QEN71_RS34480 0.76 -0.4
1,051,142 - QEN71_RS34480 0.79 -1.3
1,051,214 - QEN71_RS34480 0.85 -0.1
1,051,214 - QEN71_RS34480 0.85 +1.0
1,051,240 + QEN71_RS34480 0.87 -0.4
1,051,240 + QEN71_RS34480 0.87 +0.1
1,051,456 + -0.1
1,051,457 - +0.3
1,051,458 + -1.5
1,051,458 + +0.5
1,051,458 + -0.1
1,051,459 - -0.3
1,051,459 - +0.3
1,051,459 - +0.4
1,051,459 - -2.5
1,051,529 - +0.2
1,051,605 - -0.9
1,051,605 - +2.3
1,051,605 - -0.2
1,051,607 + +1.4
1,051,926 - QEN71_RS34485 0.27 -1.0
1,051,961 + QEN71_RS34485 0.29 -0.7
1,051,971 - QEN71_RS34485 0.30 -1.1
1,052,037 - QEN71_RS34485 0.35 +1.1
1,052,048 + QEN71_RS34485 0.36 +0.6
1,052,093 + QEN71_RS34485 0.39 +0.1
1,052,114 - QEN71_RS34485 0.41 -0.6
1,052,202 - QEN71_RS34485 0.48 +0.3
1,052,202 - QEN71_RS34485 0.48 -0.8
1,052,202 - QEN71_RS34485 0.48 -0.1
1,052,225 + QEN71_RS34485 0.50 -0.1
1,052,348 + QEN71_RS34485 0.59 +1.1
1,052,355 - QEN71_RS34485 0.60 +1.0
1,052,355 - QEN71_RS34485 0.60 -0.1

Or see this region's nucleotide sequence