Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS34475 and QEN71_RS34480 are separated by 162 nucleotides QEN71_RS34480 and QEN71_RS34485 are separated by 184 nucleotides
QEN71_RS34475: QEN71_RS34475 - APC family permease, at 1,048,570 to 1,050,018
_RS34475
QEN71_RS34480: QEN71_RS34480 - porin, at 1,050,181 to 1,051,395
_RS34480
QEN71_RS34485: QEN71_RS34485 - FAD-binding oxidoreductase, at 1,051,580 to 1,052,881
_RS34485
Position (kb)
1050
1051
1052 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1049.242 kb on + strand, within QEN71_RS34475 at 1049.290 kb on + strand, within QEN71_RS34475 at 1049.290 kb on + strand, within QEN71_RS34475 at 1049.290 kb on + strand, within QEN71_RS34475 at 1049.290 kb on + strand, within QEN71_RS34475 at 1049.290 kb on + strand, within QEN71_RS34475 at 1049.291 kb on - strand, within QEN71_RS34475 at 1049.291 kb on - strand, within QEN71_RS34475 at 1049.291 kb on - strand, within QEN71_RS34475 at 1049.292 kb on + strand, within QEN71_RS34475 at 1049.292 kb on + strand, within QEN71_RS34475 at 1049.414 kb on - strand, within QEN71_RS34475 at 1049.485 kb on + strand, within QEN71_RS34475 at 1049.530 kb on + strand, within QEN71_RS34475 at 1049.531 kb on - strand, within QEN71_RS34475 at 1049.589 kb on + strand, within QEN71_RS34475 at 1049.589 kb on + strand, within QEN71_RS34475 at 1049.590 kb on - strand, within QEN71_RS34475 at 1049.590 kb on - strand, within QEN71_RS34475 at 1049.906 kb on - strand at 1050.195 kb on - strand at 1050.195 kb on - strand at 1050.195 kb on - strand at 1050.274 kb on + strand at 1050.275 kb on - strand at 1050.552 kb on + strand, within QEN71_RS34480 at 1050.599 kb on - strand, within QEN71_RS34480 at 1050.629 kb on - strand, within QEN71_RS34480 at 1050.629 kb on - strand, within QEN71_RS34480 at 1050.654 kb on + strand, within QEN71_RS34480 at 1050.800 kb on - strand, within QEN71_RS34480 at 1050.833 kb on - strand, within QEN71_RS34480 at 1050.923 kb on - strand, within QEN71_RS34480 at 1050.923 kb on - strand, within QEN71_RS34480 at 1050.982 kb on - strand, within QEN71_RS34480 at 1051.009 kb on + strand, within QEN71_RS34480 at 1051.040 kb on - strand, within QEN71_RS34480 at 1051.105 kb on + strand, within QEN71_RS34480 at 1051.106 kb on - strand, within QEN71_RS34480 at 1051.107 kb on + strand, within QEN71_RS34480 at 1051.142 kb on - strand, within QEN71_RS34480 at 1051.214 kb on - strand, within QEN71_RS34480 at 1051.214 kb on - strand, within QEN71_RS34480 at 1051.240 kb on + strand, within QEN71_RS34480 at 1051.240 kb on + strand, within QEN71_RS34480 at 1051.456 kb on + strand at 1051.457 kb on - strand at 1051.458 kb on + strand at 1051.458 kb on + strand at 1051.458 kb on + strand at 1051.459 kb on - strand at 1051.459 kb on - strand at 1051.459 kb on - strand at 1051.459 kb on - strand at 1051.529 kb on - strand at 1051.605 kb on - strand at 1051.605 kb on - strand at 1051.605 kb on - strand at 1051.607 kb on + strand at 1051.926 kb on - strand, within QEN71_RS34485 at 1051.961 kb on + strand, within QEN71_RS34485 at 1051.971 kb on - strand, within QEN71_RS34485 at 1052.037 kb on - strand, within QEN71_RS34485 at 1052.048 kb on + strand, within QEN71_RS34485 at 1052.093 kb on + strand, within QEN71_RS34485 at 1052.114 kb on - strand, within QEN71_RS34485 at 1052.202 kb on - strand, within QEN71_RS34485 at 1052.202 kb on - strand, within QEN71_RS34485 at 1052.202 kb on - strand, within QEN71_RS34485 at 1052.225 kb on + strand, within QEN71_RS34485 at 1052.348 kb on + strand, within QEN71_RS34485 at 1052.355 kb on - strand, within QEN71_RS34485 at 1052.355 kb on - strand, within QEN71_RS34485
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 1,049,242 + QEN71_RS34475 0.46 -0.7 1,049,290 + QEN71_RS34475 0.50 -0.9 1,049,290 + QEN71_RS34475 0.50 -0.3 1,049,290 + QEN71_RS34475 0.50 -0.3 1,049,290 + QEN71_RS34475 0.50 -0.6 1,049,290 + QEN71_RS34475 0.50 -0.9 1,049,291 - QEN71_RS34475 0.50 -1.1 1,049,291 - QEN71_RS34475 0.50 -0.1 1,049,291 - QEN71_RS34475 0.50 -0.7 1,049,292 + QEN71_RS34475 0.50 -1.5 1,049,292 + QEN71_RS34475 0.50 -0.2 1,049,414 - QEN71_RS34475 0.58 -0.6 1,049,485 + QEN71_RS34475 0.63 +0.9 1,049,530 + QEN71_RS34475 0.66 -0.8 1,049,531 - QEN71_RS34475 0.66 -1.1 1,049,589 + QEN71_RS34475 0.70 +1.7 1,049,589 + QEN71_RS34475 0.70 +0.2 1,049,590 - QEN71_RS34475 0.70 -1.1 1,049,590 - QEN71_RS34475 0.70 -0.3 1,049,906 - +0.1 1,050,195 - +0.3 1,050,195 - +0.4 1,050,195 - -0.6 1,050,274 + -0.3 1,050,275 - +1.2 1,050,552 + QEN71_RS34480 0.31 +1.2 1,050,599 - QEN71_RS34480 0.34 +0.6 1,050,629 - QEN71_RS34480 0.37 -0.5 1,050,629 - QEN71_RS34480 0.37 -1.5 1,050,654 + QEN71_RS34480 0.39 -0.1 1,050,800 - QEN71_RS34480 0.51 -0.8 1,050,833 - QEN71_RS34480 0.54 +1.2 1,050,923 - QEN71_RS34480 0.61 -0.3 1,050,923 - QEN71_RS34480 0.61 -0.2 1,050,982 - QEN71_RS34480 0.66 +0.0 1,051,009 + QEN71_RS34480 0.68 -0.6 1,051,040 - QEN71_RS34480 0.71 -0.6 1,051,105 + QEN71_RS34480 0.76 +0.8 1,051,106 - QEN71_RS34480 0.76 -0.8 1,051,107 + QEN71_RS34480 0.76 -0.4 1,051,142 - QEN71_RS34480 0.79 -1.3 1,051,214 - QEN71_RS34480 0.85 -0.1 1,051,214 - QEN71_RS34480 0.85 +1.0 1,051,240 + QEN71_RS34480 0.87 -0.4 1,051,240 + QEN71_RS34480 0.87 +0.1 1,051,456 + -0.1 1,051,457 - +0.3 1,051,458 + -1.5 1,051,458 + +0.5 1,051,458 + -0.1 1,051,459 - -0.3 1,051,459 - +0.3 1,051,459 - +0.4 1,051,459 - -2.5 1,051,529 - +0.2 1,051,605 - -0.9 1,051,605 - +2.3 1,051,605 - -0.2 1,051,607 + +1.4 1,051,926 - QEN71_RS34485 0.27 -1.0 1,051,961 + QEN71_RS34485 0.29 -0.7 1,051,971 - QEN71_RS34485 0.30 -1.1 1,052,037 - QEN71_RS34485 0.35 +1.1 1,052,048 + QEN71_RS34485 0.36 +0.6 1,052,093 + QEN71_RS34485 0.39 +0.1 1,052,114 - QEN71_RS34485 0.41 -0.6 1,052,202 - QEN71_RS34485 0.48 +0.3 1,052,202 - QEN71_RS34485 0.48 -0.8 1,052,202 - QEN71_RS34485 0.48 -0.1 1,052,225 + QEN71_RS34485 0.50 -0.1 1,052,348 + QEN71_RS34485 0.59 +1.1 1,052,355 - QEN71_RS34485 0.60 +1.0 1,052,355 - QEN71_RS34485 0.60 -0.1
Or see this region's nucleotide sequence