Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS33190

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS33180 and QEN71_RS33185 are separated by 3 nucleotidesQEN71_RS33185 and QEN71_RS33190 are separated by 54 nucleotidesQEN71_RS33190 and QEN71_RS33195 are separated by 115 nucleotides QEN71_RS33180: QEN71_RS33180 - cytochrome b/b6 domain-containing protein, at 771,806 to 772,399 _RS33180 QEN71_RS33185: QEN71_RS33185 - molybdopterin-dependent oxidoreductase, at 772,403 to 773,194 _RS33185 QEN71_RS33190: QEN71_RS33190 - hypothetical protein, at 773,249 to 773,866 _RS33190 QEN71_RS33195: QEN71_RS33195 - acyltransferase, at 773,982 to 775,130 _RS33195 Position (kb) 773 774Strain fitness (log2 ratio) -2 -1 0 1at 772.277 kb on + strand, within QEN71_RS33180at 772.638 kb on + strand, within QEN71_RS33185at 772.639 kb on - strand, within QEN71_RS33185at 772.639 kb on - strand, within QEN71_RS33185at 772.712 kb on + strand, within QEN71_RS33185at 772.712 kb on + strand, within QEN71_RS33185at 772.713 kb on - strand, within QEN71_RS33185at 772.713 kb on - strand, within QEN71_RS33185at 772.751 kb on + strand, within QEN71_RS33185at 772.752 kb on - strand, within QEN71_RS33185at 772.752 kb on - strand, within QEN71_RS33185at 772.837 kb on + strand, within QEN71_RS33185at 772.846 kb on + strand, within QEN71_RS33185at 772.846 kb on + strand, within QEN71_RS33185at 772.928 kb on - strand, within QEN71_RS33185at 772.940 kb on + strand, within QEN71_RS33185at 772.940 kb on + strand, within QEN71_RS33185at 772.941 kb on - strand, within QEN71_RS33185at 772.941 kb on - strand, within QEN71_RS33185at 772.941 kb on - strand, within QEN71_RS33185at 772.941 kb on - strand, within QEN71_RS33185at 772.941 kb on - strand, within QEN71_RS33185at 772.941 kb on - strand, within QEN71_RS33185at 772.944 kb on + strand, within QEN71_RS33185at 772.944 kb on + strand, within QEN71_RS33185at 772.944 kb on + strand, within QEN71_RS33185at 772.945 kb on - strand, within QEN71_RS33185at 772.945 kb on - strand, within QEN71_RS33185at 772.945 kb on - strand, within QEN71_RS33185at 772.967 kb on + strand, within QEN71_RS33185at 772.967 kb on + strand, within QEN71_RS33185at 772.968 kb on - strand, within QEN71_RS33185at 773.027 kb on + strand, within QEN71_RS33185at 773.027 kb on + strand, within QEN71_RS33185at 773.027 kb on + strand, within QEN71_RS33185at 773.027 kb on + strand, within QEN71_RS33185at 773.028 kb on - strand, within QEN71_RS33185at 773.028 kb on - strand, within QEN71_RS33185at 773.055 kb on - strand, within QEN71_RS33185at 773.096 kb on + strand, within QEN71_RS33185at 773.097 kb on - strand, within QEN71_RS33185at 773.097 kb on - strand, within QEN71_RS33185at 773.171 kb on + strandat 773.171 kb on + strandat 773.171 kb on + strandat 773.171 kb on + strandat 773.172 kb on - strandat 773.219 kb on + strandat 773.248 kb on + strandat 773.249 kb on - strandat 773.249 kb on - strandat 773.249 kb on - strandat 773.249 kb on - strandat 773.374 kb on + strand, within QEN71_RS33190at 773.374 kb on + strand, within QEN71_RS33190at 773.375 kb on - strand, within QEN71_RS33190at 773.586 kb on - strand, within QEN71_RS33190at 773.586 kb on - strand, within QEN71_RS33190at 773.678 kb on + strand, within QEN71_RS33190at 773.678 kb on + strand, within QEN71_RS33190at 773.679 kb on - strand, within QEN71_RS33190at 773.679 kb on - strand, within QEN71_RS33190at 773.864 kb on + strandat 773.864 kb on + strandat 773.864 kb on + strandat 773.864 kb on + strandat 773.864 kb on + strandat 773.865 kb on - strandat 773.865 kb on - strandat 773.865 kb on - strandat 773.865 kb on - strandat 773.898 kb on + strandat 773.903 kb on - strandat 773.903 kb on - strandat 773.947 kb on - strandat 773.963 kb on + strandat 773.966 kb on + strandat 773.967 kb on - strandat 773.967 kb on - strandat 774.038 kb on - strandat 774.038 kb on - strandat 774.078 kb on + strandat 774.078 kb on + strandat 774.078 kb on + strandat 774.078 kb on + strandat 774.078 kb on + strandat 774.078 kb on + strandat 774.079 kb on - strandat 774.079 kb on - strandat 774.079 kb on - strandat 774.079 kb on - strandat 774.079 kb on - strandat 774.079 kb on - strandat 774.079 kb on - strandat 774.166 kb on + strand, within QEN71_RS33195at 774.167 kb on - strand, within QEN71_RS33195at 774.250 kb on + strand, within QEN71_RS33195at 774.264 kb on + strand, within QEN71_RS33195at 774.264 kb on + strand, within QEN71_RS33195at 774.264 kb on + strand, within QEN71_RS33195at 774.265 kb on - strand, within QEN71_RS33195at 774.265 kb on - strand, within QEN71_RS33195at 774.265 kb on - strand, within QEN71_RS33195at 774.265 kb on - strand, within QEN71_RS33195at 774.267 kb on + strand, within QEN71_RS33195at 774.267 kb on + strand, within QEN71_RS33195at 774.267 kb on + strand, within QEN71_RS33195at 774.267 kb on + strand, within QEN71_RS33195at 774.267 kb on + strand, within QEN71_RS33195at 774.268 kb on - strand, within QEN71_RS33195at 774.268 kb on - strand, within QEN71_RS33195at 774.268 kb on - strand, within QEN71_RS33195at 774.268 kb on - strand, within QEN71_RS33195at 774.268 kb on - strand, within QEN71_RS33195at 774.288 kb on - strand, within QEN71_RS33195at 774.313 kb on + strand, within QEN71_RS33195at 774.313 kb on + strand, within QEN71_RS33195at 774.314 kb on - strand, within QEN71_RS33195at 774.314 kb on - strand, within QEN71_RS33195at 774.314 kb on - strand, within QEN71_RS33195at 774.314 kb on - strand, within QEN71_RS33195at 774.314 kb on - strand, within QEN71_RS33195at 774.361 kb on + strand, within QEN71_RS33195at 774.375 kb on + strand, within QEN71_RS33195at 774.376 kb on - strand, within QEN71_RS33195at 774.390 kb on + strand, within QEN71_RS33195at 774.390 kb on + strand, within QEN71_RS33195at 774.390 kb on + strand, within QEN71_RS33195at 774.390 kb on + strand, within QEN71_RS33195at 774.391 kb on - strand, within QEN71_RS33195at 774.391 kb on - strand, within QEN71_RS33195at 774.391 kb on - strand, within QEN71_RS33195at 774.393 kb on + strand, within QEN71_RS33195at 774.402 kb on + strand, within QEN71_RS33195at 774.429 kb on + strand, within QEN71_RS33195at 774.429 kb on + strand, within QEN71_RS33195at 774.429 kb on + strand, within QEN71_RS33195at 774.430 kb on - strand, within QEN71_RS33195at 774.431 kb on + strand, within QEN71_RS33195at 774.432 kb on - strand, within QEN71_RS33195at 774.534 kb on + strand, within QEN71_RS33195at 774.534 kb on + strand, within QEN71_RS33195at 774.534 kb on + strand, within QEN71_RS33195at 774.535 kb on - strand, within QEN71_RS33195at 774.535 kb on - strand, within QEN71_RS33195at 774.611 kb on + strand, within QEN71_RS33195at 774.656 kb on - strand, within QEN71_RS33195at 774.684 kb on - strand, within QEN71_RS33195

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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772,277 + QEN71_RS33180 0.79 +0.2
772,638 + QEN71_RS33185 0.30 -0.6
772,639 - QEN71_RS33185 0.30 -0.2
772,639 - QEN71_RS33185 0.30 -1.8
772,712 + QEN71_RS33185 0.39 -1.8
772,712 + QEN71_RS33185 0.39 +0.8
772,713 - QEN71_RS33185 0.39 +1.0
772,713 - QEN71_RS33185 0.39 -1.2
772,751 + QEN71_RS33185 0.44 -0.7
772,752 - QEN71_RS33185 0.44 +1.0
772,752 - QEN71_RS33185 0.44 -0.5
772,837 + QEN71_RS33185 0.55 -0.1
772,846 + QEN71_RS33185 0.56 -0.4
772,846 + QEN71_RS33185 0.56 -1.2
772,928 - QEN71_RS33185 0.66 -0.2
772,940 + QEN71_RS33185 0.68 -0.7
772,940 + QEN71_RS33185 0.68 +0.4
772,941 - QEN71_RS33185 0.68 -0.1
772,941 - QEN71_RS33185 0.68 -1.0
772,941 - QEN71_RS33185 0.68 -0.7
772,941 - QEN71_RS33185 0.68 +0.1
772,941 - QEN71_RS33185 0.68 -0.9
772,941 - QEN71_RS33185 0.68 -0.4
772,944 + QEN71_RS33185 0.68 -0.3
772,944 + QEN71_RS33185 0.68 -0.3
772,944 + QEN71_RS33185 0.68 -0.6
772,945 - QEN71_RS33185 0.68 -0.6
772,945 - QEN71_RS33185 0.68 +0.8
772,945 - QEN71_RS33185 0.68 +0.8
772,967 + QEN71_RS33185 0.71 +0.2
772,967 + QEN71_RS33185 0.71 -0.2
772,968 - QEN71_RS33185 0.71 +0.3
773,027 + QEN71_RS33185 0.79 +1.6
773,027 + QEN71_RS33185 0.79 +0.4
773,027 + QEN71_RS33185 0.79 -0.0
773,027 + QEN71_RS33185 0.79 -0.4
773,028 - QEN71_RS33185 0.79 -0.5
773,028 - QEN71_RS33185 0.79 -0.2
773,055 - QEN71_RS33185 0.82 -0.1
773,096 + QEN71_RS33185 0.88 -0.2
773,097 - QEN71_RS33185 0.88 +0.2
773,097 - QEN71_RS33185 0.88 +0.3
773,171 + +0.8
773,171 + -1.6
773,171 + +0.5
773,171 + +0.1
773,172 - +0.4
773,219 + -0.4
773,248 + -0.5
773,249 - -0.6
773,249 - +0.5
773,249 - -1.0
773,249 - +0.2
773,374 + QEN71_RS33190 0.20 -1.5
773,374 + QEN71_RS33190 0.20 +0.2
773,375 - QEN71_RS33190 0.20 -0.4
773,586 - QEN71_RS33190 0.55 +1.3
773,586 - QEN71_RS33190 0.55 +0.4
773,678 + QEN71_RS33190 0.69 +0.1
773,678 + QEN71_RS33190 0.69 -1.9
773,679 - QEN71_RS33190 0.70 -0.5
773,679 - QEN71_RS33190 0.70 +0.3
773,864 + -0.7
773,864 + -0.4
773,864 + +1.6
773,864 + -1.7
773,864 + -1.1
773,865 - -0.1
773,865 - +0.3
773,865 - -1.2
773,865 - -0.3
773,898 + +0.4
773,903 - +0.4
773,903 - -0.7
773,947 - -1.8
773,963 + +0.0
773,966 + +0.2
773,967 - -0.8
773,967 - +0.1
774,038 - +0.5
774,038 - +0.9
774,078 + -1.7
774,078 + -0.7
774,078 + -0.6
774,078 + +0.0
774,078 + -0.9
774,078 + -0.3
774,079 - -0.2
774,079 - -0.3
774,079 - -1.0
774,079 - -0.7
774,079 - -0.3
774,079 - +0.6
774,079 - -0.4
774,166 + QEN71_RS33195 0.16 -0.4
774,167 - QEN71_RS33195 0.16 +1.1
774,250 + QEN71_RS33195 0.23 +0.0
774,264 + QEN71_RS33195 0.25 +1.0
774,264 + QEN71_RS33195 0.25 -0.4
774,264 + QEN71_RS33195 0.25 +0.1
774,265 - QEN71_RS33195 0.25 -0.8
774,265 - QEN71_RS33195 0.25 +1.3
774,265 - QEN71_RS33195 0.25 +0.8
774,265 - QEN71_RS33195 0.25 -0.7
774,267 + QEN71_RS33195 0.25 -0.7
774,267 + QEN71_RS33195 0.25 -2.5
774,267 + QEN71_RS33195 0.25 +0.2
774,267 + QEN71_RS33195 0.25 +0.8
774,267 + QEN71_RS33195 0.25 -0.6
774,268 - QEN71_RS33195 0.25 -1.2
774,268 - QEN71_RS33195 0.25 -1.0
774,268 - QEN71_RS33195 0.25 -1.1
774,268 - QEN71_RS33195 0.25 -0.8
774,268 - QEN71_RS33195 0.25 -0.5
774,288 - QEN71_RS33195 0.27 +0.3
774,313 + QEN71_RS33195 0.29 -0.2
774,313 + QEN71_RS33195 0.29 -0.2
774,314 - QEN71_RS33195 0.29 -0.4
774,314 - QEN71_RS33195 0.29 -0.8
774,314 - QEN71_RS33195 0.29 -0.8
774,314 - QEN71_RS33195 0.29 +0.4
774,314 - QEN71_RS33195 0.29 +0.6
774,361 + QEN71_RS33195 0.33 +0.2
774,375 + QEN71_RS33195 0.34 +0.0
774,376 - QEN71_RS33195 0.34 -0.4
774,390 + QEN71_RS33195 0.36 +0.1
774,390 + QEN71_RS33195 0.36 -1.5
774,390 + QEN71_RS33195 0.36 -0.3
774,390 + QEN71_RS33195 0.36 -0.3
774,391 - QEN71_RS33195 0.36 +0.7
774,391 - QEN71_RS33195 0.36 -0.8
774,391 - QEN71_RS33195 0.36 -1.1
774,393 + QEN71_RS33195 0.36 -0.3
774,402 + QEN71_RS33195 0.37 +0.8
774,429 + QEN71_RS33195 0.39 +0.6
774,429 + QEN71_RS33195 0.39 +0.0
774,429 + QEN71_RS33195 0.39 -1.3
774,430 - QEN71_RS33195 0.39 -0.6
774,431 + QEN71_RS33195 0.39 -0.7
774,432 - QEN71_RS33195 0.39 -0.8
774,534 + QEN71_RS33195 0.48 +0.0
774,534 + QEN71_RS33195 0.48 +0.2
774,534 + QEN71_RS33195 0.48 +0.0
774,535 - QEN71_RS33195 0.48 -0.9
774,535 - QEN71_RS33195 0.48 +0.1
774,611 + QEN71_RS33195 0.55 -1.5
774,656 - QEN71_RS33195 0.59 -0.1
774,684 - QEN71_RS33195 0.61 +0.3

Or see this region's nucleotide sequence