Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS31480

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS31475 and QEN71_RS31480 overlap by 4 nucleotidesQEN71_RS31480 and QEN71_RS31485 are separated by 43 nucleotides QEN71_RS31475: QEN71_RS31475 - ABC transporter ATP-binding protein, at 411,826 to 412,848 _RS31475 QEN71_RS31480: QEN71_RS31480 - ATP-binding cassette domain-containing protein, at 412,845 to 413,924 _RS31480 QEN71_RS31485: QEN71_RS31485 - ABC transporter substrate-binding protein, at 413,968 to 415,467 _RS31485 Position (kb) 412 413 414Strain fitness (log2 ratio) -2 -1 0 1 2at 411.860 kb on + strandat 411.861 kb on - strandat 411.861 kb on - strandat 411.861 kb on - strandat 411.861 kb on - strandat 411.861 kb on - strandat 411.861 kb on - strandat 411.861 kb on - strandat 412.162 kb on + strand, within QEN71_RS31475at 412.163 kb on - strand, within QEN71_RS31475at 412.528 kb on + strand, within QEN71_RS31475at 412.528 kb on + strand, within QEN71_RS31475at 412.528 kb on + strand, within QEN71_RS31475at 412.529 kb on - strand, within QEN71_RS31475at 412.529 kb on - strand, within QEN71_RS31475at 412.529 kb on - strand, within QEN71_RS31475at 412.529 kb on - strand, within QEN71_RS31475at 412.529 kb on - strand, within QEN71_RS31475at 412.529 kb on - strand, within QEN71_RS31475at 412.550 kb on - strand, within QEN71_RS31475at 413.064 kb on + strand, within QEN71_RS31480at 413.064 kb on + strand, within QEN71_RS31480at 413.064 kb on + strand, within QEN71_RS31480at 413.064 kb on + strand, within QEN71_RS31480at 413.064 kb on + strand, within QEN71_RS31480at 413.065 kb on - strand, within QEN71_RS31480at 413.065 kb on - strand, within QEN71_RS31480at 413.065 kb on - strand, within QEN71_RS31480at 413.065 kb on - strand, within QEN71_RS31480at 413.065 kb on - strand, within QEN71_RS31480at 413.532 kb on + strand, within QEN71_RS31480at 413.533 kb on - strand, within QEN71_RS31480at 413.579 kb on + strand, within QEN71_RS31480at 413.595 kb on + strand, within QEN71_RS31480at 413.596 kb on - strand, within QEN71_RS31480at 413.886 kb on + strandat 413.887 kb on - strandat 414.107 kb on + strandat 414.503 kb on - strand, within QEN71_RS31485at 414.503 kb on - strand, within QEN71_RS31485at 414.577 kb on + strand, within QEN71_RS31485at 414.577 kb on + strand, within QEN71_RS31485at 414.578 kb on - strand, within QEN71_RS31485at 414.745 kb on + strand, within QEN71_RS31485at 414.746 kb on - strand, within QEN71_RS31485at 414.746 kb on - strand, within QEN71_RS31485at 414.746 kb on - strand, within QEN71_RS31485at 414.746 kb on - strand, within QEN71_RS31485at 414.746 kb on - strand, within QEN71_RS31485at 414.746 kb on - strand, within QEN71_RS31485at 414.746 kb on - strand, within QEN71_RS31485at 414.746 kb on - strand, within QEN71_RS31485at 414.746 kb on - strand, within QEN71_RS31485at 414.748 kb on + strand, within QEN71_RS31485at 414.748 kb on + strand, within QEN71_RS31485at 414.748 kb on + strand, within QEN71_RS31485at 414.749 kb on - strand, within QEN71_RS31485at 414.749 kb on - strand, within QEN71_RS31485at 414.749 kb on - strand, within QEN71_RS31485at 414.877 kb on + strand, within QEN71_RS31485at 414.877 kb on + strand, within QEN71_RS31485at 414.877 kb on + strand, within QEN71_RS31485at 414.916 kb on + strand, within QEN71_RS31485at 414.919 kb on + strand, within QEN71_RS31485at 414.919 kb on + strand, within QEN71_RS31485at 414.919 kb on + strand, within QEN71_RS31485at 414.920 kb on - strand, within QEN71_RS31485at 414.920 kb on - strand, within QEN71_RS31485

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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411,860 + -0.1
411,861 - +2.0
411,861 - -1.0
411,861 - -0.3
411,861 - +0.3
411,861 - +0.4
411,861 - +1.6
411,861 - -0.0
412,162 + QEN71_RS31475 0.33 -0.5
412,163 - QEN71_RS31475 0.33 -0.1
412,528 + QEN71_RS31475 0.69 +0.2
412,528 + QEN71_RS31475 0.69 +0.3
412,528 + QEN71_RS31475 0.69 -0.1
412,529 - QEN71_RS31475 0.69 +1.2
412,529 - QEN71_RS31475 0.69 +0.7
412,529 - QEN71_RS31475 0.69 -0.9
412,529 - QEN71_RS31475 0.69 +1.4
412,529 - QEN71_RS31475 0.69 -0.0
412,529 - QEN71_RS31475 0.69 +1.0
412,550 - QEN71_RS31475 0.71 -0.6
413,064 + QEN71_RS31480 0.20 -0.3
413,064 + QEN71_RS31480 0.20 +0.1
413,064 + QEN71_RS31480 0.20 +0.1
413,064 + QEN71_RS31480 0.20 -1.2
413,064 + QEN71_RS31480 0.20 +0.0
413,065 - QEN71_RS31480 0.20 -0.6
413,065 - QEN71_RS31480 0.20 -0.1
413,065 - QEN71_RS31480 0.20 +0.3
413,065 - QEN71_RS31480 0.20 +0.6
413,065 - QEN71_RS31480 0.20 +0.5
413,532 + QEN71_RS31480 0.64 -1.7
413,533 - QEN71_RS31480 0.64 -0.0
413,579 + QEN71_RS31480 0.68 +1.0
413,595 + QEN71_RS31480 0.69 -0.6
413,596 - QEN71_RS31480 0.70 -2.2
413,886 + -0.7
413,887 - -0.7
414,107 + +1.0
414,503 - QEN71_RS31485 0.36 +0.2
414,503 - QEN71_RS31485 0.36 +1.1
414,577 + QEN71_RS31485 0.41 -0.8
414,577 + QEN71_RS31485 0.41 -0.5
414,578 - QEN71_RS31485 0.41 +0.7
414,745 + QEN71_RS31485 0.52 +0.6
414,746 - QEN71_RS31485 0.52 -0.4
414,746 - QEN71_RS31485 0.52 -0.6
414,746 - QEN71_RS31485 0.52 -1.6
414,746 - QEN71_RS31485 0.52 -0.5
414,746 - QEN71_RS31485 0.52 -1.1
414,746 - QEN71_RS31485 0.52 +0.3
414,746 - QEN71_RS31485 0.52 -0.4
414,746 - QEN71_RS31485 0.52 +1.0
414,746 - QEN71_RS31485 0.52 +0.8
414,748 + QEN71_RS31485 0.52 +0.6
414,748 + QEN71_RS31485 0.52 -0.5
414,748 + QEN71_RS31485 0.52 -0.6
414,749 - QEN71_RS31485 0.52 +0.5
414,749 - QEN71_RS31485 0.52 +1.0
414,749 - QEN71_RS31485 0.52 +0.6
414,877 + QEN71_RS31485 0.61 -1.3
414,877 + QEN71_RS31485 0.61 -1.3
414,877 + QEN71_RS31485 0.61 -0.6
414,916 + QEN71_RS31485 0.63 +0.1
414,919 + QEN71_RS31485 0.63 +1.1
414,919 + QEN71_RS31485 0.63 +1.6
414,919 + QEN71_RS31485 0.63 -0.2
414,920 - QEN71_RS31485 0.63 +1.0
414,920 - QEN71_RS31485 0.63 -0.3

Or see this region's nucleotide sequence