Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS22905

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS22900 and QEN71_RS22905 are separated by 612 nucleotidesQEN71_RS22905 and QEN71_RS22910 are separated by 84 nucleotides QEN71_RS22900: QEN71_RS22900 - sugar transferase, at 5,088,017 to 5,089,084 _RS22900 QEN71_RS22905: QEN71_RS22905 - ribose-5-phosphate isomerase RpiA, at 5,089,697 to 5,090,392 _RS22905 QEN71_RS22910: QEN71_RS22910 - N-acetylmuramoyl-L-alanine amidase, at 5,090,477 to 5,091,343 _RS22910 Position (kb) 5089 5090 5091Strain fitness (log2 ratio) -2 -1 0 1at 5088.772 kb on - strand, within QEN71_RS22900at 5089.047 kb on - strandat 5089.064 kb on - strandat 5089.064 kb on - strandat 5089.064 kb on - strandat 5089.084 kb on + strandat 5089.085 kb on - strandat 5089.090 kb on + strandat 5089.283 kb on - strandat 5089.394 kb on - strandat 5089.407 kb on + strandat 5089.411 kb on + strandat 5089.411 kb on + strandat 5089.497 kb on - strandat 5089.660 kb on + strandat 5089.660 kb on + strandat 5089.661 kb on - strandat 5089.661 kb on - strandat 5089.664 kb on + strandat 5089.664 kb on + strandat 5089.665 kb on - strandat 5089.687 kb on + strandat 5089.688 kb on - strandat 5090.459 kb on + strandat 5090.459 kb on + strandat 5090.520 kb on + strandat 5090.520 kb on + strandat 5090.520 kb on + strandat 5090.521 kb on - strandat 5090.521 kb on - strandat 5090.521 kb on - strandat 5090.521 kb on - strandat 5090.578 kb on - strand, within QEN71_RS22910at 5090.662 kb on - strand, within QEN71_RS22910at 5090.662 kb on - strand, within QEN71_RS22910at 5090.668 kb on - strand, within QEN71_RS22910at 5090.781 kb on + strand, within QEN71_RS22910at 5090.781 kb on + strand, within QEN71_RS22910at 5091.122 kb on + strand, within QEN71_RS22910at 5091.122 kb on + strand, within QEN71_RS22910at 5091.122 kb on + strand, within QEN71_RS22910at 5091.123 kb on - strand, within QEN71_RS22910at 5091.123 kb on - strand, within QEN71_RS22910at 5091.123 kb on - strand, within QEN71_RS22910at 5091.123 kb on - strand, within QEN71_RS22910at 5091.126 kb on + strand, within QEN71_RS22910at 5091.126 kb on + strand, within QEN71_RS22910at 5091.127 kb on - strand, within QEN71_RS22910at 5091.127 kb on - strand, within QEN71_RS22910at 5091.127 kb on - strand, within QEN71_RS22910at 5091.127 kb on - strand, within QEN71_RS22910at 5091.155 kb on + strand, within QEN71_RS22910at 5091.156 kb on - strand, within QEN71_RS22910at 5091.189 kb on + strand, within QEN71_RS22910at 5091.190 kb on - strand, within QEN71_RS22910at 5091.197 kb on + strand, within QEN71_RS22910at 5091.197 kb on + strand, within QEN71_RS22910at 5091.197 kb on + strand, within QEN71_RS22910at 5091.225 kb on + strand, within QEN71_RS22910at 5091.225 kb on + strand, within QEN71_RS22910at 5091.226 kb on - strand, within QEN71_RS22910at 5091.226 kb on - strand, within QEN71_RS22910at 5091.226 kb on - strand, within QEN71_RS22910at 5091.226 kb on - strand, within QEN71_RS22910at 5091.252 kb on + strand, within QEN71_RS22910at 5091.252 kb on + strand, within QEN71_RS22910at 5091.252 kb on + strand, within QEN71_RS22910at 5091.253 kb on - strand, within QEN71_RS22910at 5091.255 kb on + strand, within QEN71_RS22910at 5091.255 kb on + strand, within QEN71_RS22910at 5091.255 kb on + strand, within QEN71_RS22910at 5091.256 kb on - strand, within QEN71_RS22910at 5091.256 kb on - strand, within QEN71_RS22910at 5091.256 kb on - strand, within QEN71_RS22910at 5091.293 kb on + strandat 5091.293 kb on + strandat 5091.294 kb on - strandat 5091.312 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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5,088,772 - QEN71_RS22900 0.71 -0.8
5,089,047 - -0.8
5,089,064 - -0.5
5,089,064 - -0.5
5,089,064 - -2.1
5,089,084 + -0.7
5,089,085 - -0.0
5,089,090 + -0.4
5,089,283 - -1.4
5,089,394 - -0.8
5,089,407 + -1.9
5,089,411 + -0.1
5,089,411 + -1.9
5,089,497 - -0.0
5,089,660 + -0.1
5,089,660 + +0.3
5,089,661 - +0.0
5,089,661 - -0.4
5,089,664 + +0.1
5,089,664 + -0.8
5,089,665 - -0.4
5,089,687 + -0.2
5,089,688 - +1.7
5,090,459 + -0.5
5,090,459 + +0.2
5,090,520 + -0.0
5,090,520 + -1.4
5,090,520 + -0.7
5,090,521 - -0.4
5,090,521 - -1.3
5,090,521 - +0.6
5,090,521 - -0.2
5,090,578 - QEN71_RS22910 0.12 +0.2
5,090,662 - QEN71_RS22910 0.21 +0.0
5,090,662 - QEN71_RS22910 0.21 -1.2
5,090,668 - QEN71_RS22910 0.22 +0.2
5,090,781 + QEN71_RS22910 0.35 +0.0
5,090,781 + QEN71_RS22910 0.35 -0.8
5,091,122 + QEN71_RS22910 0.74 +0.4
5,091,122 + QEN71_RS22910 0.74 -0.0
5,091,122 + QEN71_RS22910 0.74 -1.3
5,091,123 - QEN71_RS22910 0.75 -0.3
5,091,123 - QEN71_RS22910 0.75 -1.1
5,091,123 - QEN71_RS22910 0.75 +1.3
5,091,123 - QEN71_RS22910 0.75 -0.2
5,091,126 + QEN71_RS22910 0.75 +0.4
5,091,126 + QEN71_RS22910 0.75 +0.1
5,091,127 - QEN71_RS22910 0.75 -1.4
5,091,127 - QEN71_RS22910 0.75 +0.2
5,091,127 - QEN71_RS22910 0.75 -0.3
5,091,127 - QEN71_RS22910 0.75 -0.6
5,091,155 + QEN71_RS22910 0.78 -0.7
5,091,156 - QEN71_RS22910 0.78 +1.5
5,091,189 + QEN71_RS22910 0.82 -0.6
5,091,190 - QEN71_RS22910 0.82 -0.0
5,091,197 + QEN71_RS22910 0.83 +1.6
5,091,197 + QEN71_RS22910 0.83 -0.6
5,091,197 + QEN71_RS22910 0.83 -0.7
5,091,225 + QEN71_RS22910 0.86 -0.5
5,091,225 + QEN71_RS22910 0.86 -0.4
5,091,226 - QEN71_RS22910 0.86 +0.7
5,091,226 - QEN71_RS22910 0.86 +1.0
5,091,226 - QEN71_RS22910 0.86 -0.7
5,091,226 - QEN71_RS22910 0.86 +0.0
5,091,252 + QEN71_RS22910 0.89 -1.6
5,091,252 + QEN71_RS22910 0.89 -0.8
5,091,252 + QEN71_RS22910 0.89 +0.2
5,091,253 - QEN71_RS22910 0.90 +0.1
5,091,255 + QEN71_RS22910 0.90 +1.7
5,091,255 + QEN71_RS22910 0.90 +0.3
5,091,255 + QEN71_RS22910 0.90 +0.5
5,091,256 - QEN71_RS22910 0.90 -0.9
5,091,256 - QEN71_RS22910 0.90 +0.3
5,091,256 - QEN71_RS22910 0.90 +1.0
5,091,293 + -1.2
5,091,293 + +1.0
5,091,294 - -0.6
5,091,312 - -0.4

Or see this region's nucleotide sequence