Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS22900 and QEN71_RS22905 are separated by 612 nucleotides QEN71_RS22905 and QEN71_RS22910 are separated by 84 nucleotides
QEN71_RS22900: QEN71_RS22900 - sugar transferase, at 5,088,017 to 5,089,084
_RS22900
QEN71_RS22905: QEN71_RS22905 - ribose-5-phosphate isomerase RpiA, at 5,089,697 to 5,090,392
_RS22905
QEN71_RS22910: QEN71_RS22910 - N-acetylmuramoyl-L-alanine amidase, at 5,090,477 to 5,091,343
_RS22910
Position (kb)
5089
5090
5091 Strain fitness (log2 ratio)
-2
-1
0
1 at 5088.772 kb on - strand, within QEN71_RS22900 at 5089.047 kb on - strand at 5089.064 kb on - strand at 5089.064 kb on - strand at 5089.064 kb on - strand at 5089.084 kb on + strand at 5089.085 kb on - strand at 5089.090 kb on + strand at 5089.283 kb on - strand at 5089.394 kb on - strand at 5089.407 kb on + strand at 5089.411 kb on + strand at 5089.411 kb on + strand at 5089.497 kb on - strand at 5089.660 kb on + strand at 5089.660 kb on + strand at 5089.661 kb on - strand at 5089.661 kb on - strand at 5089.664 kb on + strand at 5089.664 kb on + strand at 5089.665 kb on - strand at 5089.687 kb on + strand at 5089.688 kb on - strand at 5090.459 kb on + strand at 5090.459 kb on + strand at 5090.520 kb on + strand at 5090.520 kb on + strand at 5090.520 kb on + strand at 5090.521 kb on - strand at 5090.521 kb on - strand at 5090.521 kb on - strand at 5090.521 kb on - strand at 5090.578 kb on - strand, within QEN71_RS22910 at 5090.662 kb on - strand, within QEN71_RS22910 at 5090.662 kb on - strand, within QEN71_RS22910 at 5090.668 kb on - strand, within QEN71_RS22910 at 5090.781 kb on + strand, within QEN71_RS22910 at 5090.781 kb on + strand, within QEN71_RS22910 at 5091.122 kb on + strand, within QEN71_RS22910 at 5091.122 kb on + strand, within QEN71_RS22910 at 5091.122 kb on + strand, within QEN71_RS22910 at 5091.123 kb on - strand, within QEN71_RS22910 at 5091.123 kb on - strand, within QEN71_RS22910 at 5091.123 kb on - strand, within QEN71_RS22910 at 5091.123 kb on - strand, within QEN71_RS22910 at 5091.126 kb on + strand, within QEN71_RS22910 at 5091.126 kb on + strand, within QEN71_RS22910 at 5091.127 kb on - strand, within QEN71_RS22910 at 5091.127 kb on - strand, within QEN71_RS22910 at 5091.127 kb on - strand, within QEN71_RS22910 at 5091.127 kb on - strand, within QEN71_RS22910 at 5091.155 kb on + strand, within QEN71_RS22910 at 5091.156 kb on - strand, within QEN71_RS22910 at 5091.189 kb on + strand, within QEN71_RS22910 at 5091.190 kb on - strand, within QEN71_RS22910 at 5091.197 kb on + strand, within QEN71_RS22910 at 5091.197 kb on + strand, within QEN71_RS22910 at 5091.197 kb on + strand, within QEN71_RS22910 at 5091.225 kb on + strand, within QEN71_RS22910 at 5091.225 kb on + strand, within QEN71_RS22910 at 5091.226 kb on - strand, within QEN71_RS22910 at 5091.226 kb on - strand, within QEN71_RS22910 at 5091.226 kb on - strand, within QEN71_RS22910 at 5091.226 kb on - strand, within QEN71_RS22910 at 5091.252 kb on + strand, within QEN71_RS22910 at 5091.252 kb on + strand, within QEN71_RS22910 at 5091.252 kb on + strand, within QEN71_RS22910 at 5091.253 kb on - strand, within QEN71_RS22910 at 5091.255 kb on + strand, within QEN71_RS22910 at 5091.255 kb on + strand, within QEN71_RS22910 at 5091.255 kb on + strand, within QEN71_RS22910 at 5091.256 kb on - strand, within QEN71_RS22910 at 5091.256 kb on - strand, within QEN71_RS22910 at 5091.256 kb on - strand, within QEN71_RS22910 at 5091.293 kb on + strand at 5091.293 kb on + strand at 5091.294 kb on - strand at 5091.312 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 5,088,772 - QEN71_RS22900 0.71 -0.8 5,089,047 - -0.8 5,089,064 - -0.5 5,089,064 - -0.5 5,089,064 - -2.1 5,089,084 + -0.7 5,089,085 - -0.0 5,089,090 + -0.4 5,089,283 - -1.4 5,089,394 - -0.8 5,089,407 + -1.9 5,089,411 + -0.1 5,089,411 + -1.9 5,089,497 - -0.0 5,089,660 + -0.1 5,089,660 + +0.3 5,089,661 - +0.0 5,089,661 - -0.4 5,089,664 + +0.1 5,089,664 + -0.8 5,089,665 - -0.4 5,089,687 + -0.2 5,089,688 - +1.7 5,090,459 + -0.5 5,090,459 + +0.2 5,090,520 + -0.0 5,090,520 + -1.4 5,090,520 + -0.7 5,090,521 - -0.4 5,090,521 - -1.3 5,090,521 - +0.6 5,090,521 - -0.2 5,090,578 - QEN71_RS22910 0.12 +0.2 5,090,662 - QEN71_RS22910 0.21 +0.0 5,090,662 - QEN71_RS22910 0.21 -1.2 5,090,668 - QEN71_RS22910 0.22 +0.2 5,090,781 + QEN71_RS22910 0.35 +0.0 5,090,781 + QEN71_RS22910 0.35 -0.8 5,091,122 + QEN71_RS22910 0.74 +0.4 5,091,122 + QEN71_RS22910 0.74 -0.0 5,091,122 + QEN71_RS22910 0.74 -1.3 5,091,123 - QEN71_RS22910 0.75 -0.3 5,091,123 - QEN71_RS22910 0.75 -1.1 5,091,123 - QEN71_RS22910 0.75 +1.3 5,091,123 - QEN71_RS22910 0.75 -0.2 5,091,126 + QEN71_RS22910 0.75 +0.4 5,091,126 + QEN71_RS22910 0.75 +0.1 5,091,127 - QEN71_RS22910 0.75 -1.4 5,091,127 - QEN71_RS22910 0.75 +0.2 5,091,127 - QEN71_RS22910 0.75 -0.3 5,091,127 - QEN71_RS22910 0.75 -0.6 5,091,155 + QEN71_RS22910 0.78 -0.7 5,091,156 - QEN71_RS22910 0.78 +1.5 5,091,189 + QEN71_RS22910 0.82 -0.6 5,091,190 - QEN71_RS22910 0.82 -0.0 5,091,197 + QEN71_RS22910 0.83 +1.6 5,091,197 + QEN71_RS22910 0.83 -0.6 5,091,197 + QEN71_RS22910 0.83 -0.7 5,091,225 + QEN71_RS22910 0.86 -0.5 5,091,225 + QEN71_RS22910 0.86 -0.4 5,091,226 - QEN71_RS22910 0.86 +0.7 5,091,226 - QEN71_RS22910 0.86 +1.0 5,091,226 - QEN71_RS22910 0.86 -0.7 5,091,226 - QEN71_RS22910 0.86 +0.0 5,091,252 + QEN71_RS22910 0.89 -1.6 5,091,252 + QEN71_RS22910 0.89 -0.8 5,091,252 + QEN71_RS22910 0.89 +0.2 5,091,253 - QEN71_RS22910 0.90 +0.1 5,091,255 + QEN71_RS22910 0.90 +1.7 5,091,255 + QEN71_RS22910 0.90 +0.3 5,091,255 + QEN71_RS22910 0.90 +0.5 5,091,256 - QEN71_RS22910 0.90 -0.9 5,091,256 - QEN71_RS22910 0.90 +0.3 5,091,256 - QEN71_RS22910 0.90 +1.0 5,091,293 + -1.2 5,091,293 + +1.0 5,091,294 - -0.6 5,091,312 - -0.4
Or see this region's nucleotide sequence