Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS19020 and QEN71_RS19025 are separated by 155 nucleotides QEN71_RS19025 and QEN71_RS19030 are separated by 328 nucleotides
QEN71_RS19020: QEN71_RS19020 - sigma-54 dependent transcriptional regulator, at 4,232,035 to 4,233,441
_RS19020
QEN71_RS19025: QEN71_RS19025 - alpha-amylase, at 4,233,597 to 4,233,963
_RS19025
QEN71_RS19030: QEN71_RS19030 - ParB/Srx family N-terminal domain-containing protein, at 4,234,292 to 4,234,885
_RS19030
Position (kb)
4233
4234 Strain fitness (log2 ratio)
-2
-1
0
1 at 4232.987 kb on + strand, within QEN71_RS19020 at 4232.987 kb on + strand, within QEN71_RS19020 at 4233.150 kb on - strand, within QEN71_RS19020 at 4233.629 kb on + strand at 4233.630 kb on - strand at 4233.630 kb on - strand at 4233.718 kb on + strand, within QEN71_RS19025 at 4233.738 kb on + strand, within QEN71_RS19025 at 4233.800 kb on + strand, within QEN71_RS19025 at 4233.953 kb on + strand at 4233.975 kb on - strand at 4233.981 kb on + strand at 4233.981 kb on + strand at 4233.981 kb on + strand at 4233.981 kb on + strand at 4233.982 kb on - strand at 4233.982 kb on - strand at 4233.982 kb on - strand at 4234.043 kb on + strand at 4234.044 kb on - strand at 4234.220 kb on + strand at 4234.221 kb on - strand at 4234.221 kb on - strand at 4234.221 kb on - strand at 4234.221 kb on - strand at 4234.239 kb on + strand at 4234.373 kb on + strand, within QEN71_RS19030 at 4234.457 kb on + strand, within QEN71_RS19030 at 4234.458 kb on - strand, within QEN71_RS19030 at 4234.458 kb on - strand, within QEN71_RS19030 at 4234.458 kb on - strand, within QEN71_RS19030 at 4234.458 kb on - strand, within QEN71_RS19030 at 4234.596 kb on - strand, within QEN71_RS19030 at 4234.596 kb on - strand, within QEN71_RS19030 at 4234.596 kb on - strand, within QEN71_RS19030 at 4234.640 kb on + strand, within QEN71_RS19030 at 4234.640 kb on + strand, within QEN71_RS19030 at 4234.640 kb on + strand, within QEN71_RS19030 at 4234.640 kb on + strand, within QEN71_RS19030 at 4234.641 kb on - strand, within QEN71_RS19030 at 4234.641 kb on - strand, within QEN71_RS19030 at 4234.641 kb on - strand, within QEN71_RS19030 at 4234.641 kb on - strand, within QEN71_RS19030 at 4234.641 kb on - strand, within QEN71_RS19030 at 4234.641 kb on - strand, within QEN71_RS19030 at 4234.673 kb on + strand, within QEN71_RS19030
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 4,232,987 + QEN71_RS19020 0.68 -0.3 4,232,987 + QEN71_RS19020 0.68 -1.2 4,233,150 - QEN71_RS19020 0.79 -1.2 4,233,629 + +1.1 4,233,630 - -0.3 4,233,630 - -0.5 4,233,718 + QEN71_RS19025 0.33 -0.1 4,233,738 + QEN71_RS19025 0.38 -0.1 4,233,800 + QEN71_RS19025 0.55 -1.5 4,233,953 + -0.3 4,233,975 - -0.0 4,233,981 + -1.5 4,233,981 + -0.7 4,233,981 + -0.7 4,233,981 + +0.1 4,233,982 - -1.4 4,233,982 - -1.7 4,233,982 - +0.4 4,234,043 + +0.2 4,234,044 - -0.3 4,234,220 + +0.1 4,234,221 - -1.4 4,234,221 - -0.9 4,234,221 - -0.3 4,234,221 - -1.6 4,234,239 + -0.3 4,234,373 + QEN71_RS19030 0.14 +0.4 4,234,457 + QEN71_RS19030 0.28 -0.6 4,234,458 - QEN71_RS19030 0.28 +0.5 4,234,458 - QEN71_RS19030 0.28 +0.6 4,234,458 - QEN71_RS19030 0.28 +0.0 4,234,458 - QEN71_RS19030 0.28 +1.1 4,234,596 - QEN71_RS19030 0.51 -0.5 4,234,596 - QEN71_RS19030 0.51 +0.4 4,234,596 - QEN71_RS19030 0.51 +0.3 4,234,640 + QEN71_RS19030 0.59 -0.1 4,234,640 + QEN71_RS19030 0.59 +0.8 4,234,640 + QEN71_RS19030 0.59 -0.3 4,234,640 + QEN71_RS19030 0.59 -0.6 4,234,641 - QEN71_RS19030 0.59 -2.1 4,234,641 - QEN71_RS19030 0.59 -0.5 4,234,641 - QEN71_RS19030 0.59 -0.8 4,234,641 - QEN71_RS19030 0.59 -0.6 4,234,641 - QEN71_RS19030 0.59 +0.8 4,234,641 - QEN71_RS19030 0.59 -1.4 4,234,673 + QEN71_RS19030 0.64 -1.2
Or see this region's nucleotide sequence