Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS19025

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS19020 and QEN71_RS19025 are separated by 155 nucleotidesQEN71_RS19025 and QEN71_RS19030 are separated by 328 nucleotides QEN71_RS19020: QEN71_RS19020 - sigma-54 dependent transcriptional regulator, at 4,232,035 to 4,233,441 _RS19020 QEN71_RS19025: QEN71_RS19025 - alpha-amylase, at 4,233,597 to 4,233,963 _RS19025 QEN71_RS19030: QEN71_RS19030 - ParB/Srx family N-terminal domain-containing protein, at 4,234,292 to 4,234,885 _RS19030 Position (kb) 4233 4234Strain fitness (log2 ratio) -2 -1 0 1at 4232.987 kb on + strand, within QEN71_RS19020at 4232.987 kb on + strand, within QEN71_RS19020at 4233.150 kb on - strand, within QEN71_RS19020at 4233.629 kb on + strandat 4233.630 kb on - strandat 4233.630 kb on - strandat 4233.718 kb on + strand, within QEN71_RS19025at 4233.738 kb on + strand, within QEN71_RS19025at 4233.800 kb on + strand, within QEN71_RS19025at 4233.953 kb on + strandat 4233.975 kb on - strandat 4233.981 kb on + strandat 4233.981 kb on + strandat 4233.981 kb on + strandat 4233.981 kb on + strandat 4233.982 kb on - strandat 4233.982 kb on - strandat 4233.982 kb on - strandat 4234.043 kb on + strandat 4234.044 kb on - strandat 4234.220 kb on + strandat 4234.221 kb on - strandat 4234.221 kb on - strandat 4234.221 kb on - strandat 4234.221 kb on - strandat 4234.239 kb on + strandat 4234.373 kb on + strand, within QEN71_RS19030at 4234.457 kb on + strand, within QEN71_RS19030at 4234.458 kb on - strand, within QEN71_RS19030at 4234.458 kb on - strand, within QEN71_RS19030at 4234.458 kb on - strand, within QEN71_RS19030at 4234.458 kb on - strand, within QEN71_RS19030at 4234.596 kb on - strand, within QEN71_RS19030at 4234.596 kb on - strand, within QEN71_RS19030at 4234.596 kb on - strand, within QEN71_RS19030at 4234.640 kb on + strand, within QEN71_RS19030at 4234.640 kb on + strand, within QEN71_RS19030at 4234.640 kb on + strand, within QEN71_RS19030at 4234.640 kb on + strand, within QEN71_RS19030at 4234.641 kb on - strand, within QEN71_RS19030at 4234.641 kb on - strand, within QEN71_RS19030at 4234.641 kb on - strand, within QEN71_RS19030at 4234.641 kb on - strand, within QEN71_RS19030at 4234.641 kb on - strand, within QEN71_RS19030at 4234.641 kb on - strand, within QEN71_RS19030at 4234.673 kb on + strand, within QEN71_RS19030

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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4,232,987 + QEN71_RS19020 0.68 -0.3
4,232,987 + QEN71_RS19020 0.68 -1.2
4,233,150 - QEN71_RS19020 0.79 -1.2
4,233,629 + +1.1
4,233,630 - -0.3
4,233,630 - -0.5
4,233,718 + QEN71_RS19025 0.33 -0.1
4,233,738 + QEN71_RS19025 0.38 -0.1
4,233,800 + QEN71_RS19025 0.55 -1.5
4,233,953 + -0.3
4,233,975 - -0.0
4,233,981 + -1.5
4,233,981 + -0.7
4,233,981 + -0.7
4,233,981 + +0.1
4,233,982 - -1.4
4,233,982 - -1.7
4,233,982 - +0.4
4,234,043 + +0.2
4,234,044 - -0.3
4,234,220 + +0.1
4,234,221 - -1.4
4,234,221 - -0.9
4,234,221 - -0.3
4,234,221 - -1.6
4,234,239 + -0.3
4,234,373 + QEN71_RS19030 0.14 +0.4
4,234,457 + QEN71_RS19030 0.28 -0.6
4,234,458 - QEN71_RS19030 0.28 +0.5
4,234,458 - QEN71_RS19030 0.28 +0.6
4,234,458 - QEN71_RS19030 0.28 +0.0
4,234,458 - QEN71_RS19030 0.28 +1.1
4,234,596 - QEN71_RS19030 0.51 -0.5
4,234,596 - QEN71_RS19030 0.51 +0.4
4,234,596 - QEN71_RS19030 0.51 +0.3
4,234,640 + QEN71_RS19030 0.59 -0.1
4,234,640 + QEN71_RS19030 0.59 +0.8
4,234,640 + QEN71_RS19030 0.59 -0.3
4,234,640 + QEN71_RS19030 0.59 -0.6
4,234,641 - QEN71_RS19030 0.59 -2.1
4,234,641 - QEN71_RS19030 0.59 -0.5
4,234,641 - QEN71_RS19030 0.59 -0.8
4,234,641 - QEN71_RS19030 0.59 -0.6
4,234,641 - QEN71_RS19030 0.59 +0.8
4,234,641 - QEN71_RS19030 0.59 -1.4
4,234,673 + QEN71_RS19030 0.64 -1.2

Or see this region's nucleotide sequence